Strain Fitness in Escherichia fergusonii Becca around EFB2_03355

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,510,736	+				+0.8
3,510,736	+				-1.2
3,510,736	+				+1.1
3,510,737	-				-3.4
3,510,737	-				-0.3
3,510,745	+				+2.0
3,510,745	+				+0.9
3,510,745	+				-0.0
3,510,745	+				+0.1
3,510,745	+				-0.6
3,510,746	-				-0.8
3,510,756	-				+0.1
3,510,762	-				-2.8
3,510,762	-				-2.1
3,510,762	-				+0.6
3,510,762	-				-0.7
3,510,771	+				-1.8
3,510,771	+				+1.4
3,510,771	+				+2.1
3,510,772	-				-3.1
3,510,772	-				+0.4
3,510,772	-				+0.3
3,510,772	-				+0.6
3,510,772	-				-2.6
3,510,776	-				-0.2
3,510,835	+				-0.9
3,510,836	-				+0.5
3,510,836	-				-1.2
3,510,836	-				-3.4
3,510,836	-				-0.1
3,510,836	-				-2.4
3,510,836	-				+1.6
3,510,836	-				+1.5
3,510,836	-				-1.9
3,510,838	+				+1.3
3,510,838	+				+1.4
3,510,838	+				+2.6
3,510,838	+				+1.9
3,510,838	+				-1.2
3,510,838	+				+0.5
3,510,838	+				-2.1
3,510,839	-				+0.8
3,510,839	-				-0.3
3,510,839	-				-0.8
3,510,839	-				-0.5
3,510,839	-				-1.3
3,510,839	-				-1.5
3,510,839	-				-2.4
3,510,839	-				+1.7
3,510,839	-				+0.6
3,510,839	-				+0.3
3,510,839	-				+1.3
3,510,839	-				-0.1
3,510,839	-				+0.8
3,510,857	+				-0.2
3,510,857	+				-0.3
3,510,857	+				-0.4
3,510,857	+				-0.5
3,510,857	+				+0.7
3,510,857	+				+0.0
3,510,857	+				+0.8
3,510,857	+				-0.4
3,510,857	+				-1.1
3,510,857	+				+1.1
3,510,857	+				-1.0
3,510,857	+				+0.8
3,510,857	+				+0.8
3,510,858	-				-0.5
3,510,858	-				-1.7
3,510,858	-				-1.2
3,510,858	-				-1.4
3,510,858	-				-1.5
3,510,883	+				-1.9
3,510,884	-				-0.3
3,510,884	-				-0.6
3,510,884	-				+1.3
3,510,884	-				-2.6
3,510,884	-				+0.1
3,510,891	+		EFB2_03354	0.11	+0.5
3,510,891	+		EFB2_03354	0.11	-2.2
3,510,891	+		EFB2_03354	0.11	+0.9
3,510,892	-		EFB2_03354	0.11	-1.4
3,510,892	-		EFB2_03354	0.11	-0.4
3,510,892	-		EFB2_03354	0.11	-1.2
3,510,949	+		EFB2_03354	0.17	+1.2
3,510,949	+		EFB2_03354	0.17	-1.3
3,510,949	+		EFB2_03354	0.17	-0.4
3,510,949	+		EFB2_03354	0.17	-0.4
3,510,949	+		EFB2_03354	0.17	+0.6
3,510,949	+		EFB2_03354	0.17	-0.0
3,510,949	+		EFB2_03354	0.17	-0.7
3,510,949	+		EFB2_03354	0.17	+1.1
3,510,950	-		EFB2_03354	0.17	-1.2
3,510,950	-		EFB2_03354	0.17	-0.2
3,510,950	-		EFB2_03354	0.17	+0.0
3,510,950	-		EFB2_03354	0.17	-0.7
3,510,950	-		EFB2_03354	0.17	+1.4
3,510,950	-		EFB2_03354	0.17	-1.2
3,510,950	-		EFB2_03354	0.17	-3.1
3,510,950	-		EFB2_03354	0.17	-2.3
3,510,950	-		EFB2_03354	0.17	-1.8
3,510,950	-		EFB2_03354	0.17	+0.4
3,510,950	-		EFB2_03354	0.17	-2.1
3,510,950	-		EFB2_03354	0.17	+0.6
3,510,950	-		EFB2_03354	0.17	+0.1
3,510,950	-		EFB2_03354	0.17	-0.1
3,510,962	-		EFB2_03354	0.18	-0.2
3,511,041	+		EFB2_03354	0.27	+0.6
3,511,041	+		EFB2_03354	0.27	-1.3
3,511,042	-		EFB2_03354	0.27	+0.8
3,511,042	-		EFB2_03354	0.27	+1.3
3,511,042	-		EFB2_03354	0.27	-1.0
3,511,093	+		EFB2_03354	0.32	-0.2
3,511,093	+		EFB2_03354	0.32	-2.4
3,511,093	+		EFB2_03354	0.32	-0.4
3,511,094	-		EFB2_03354	0.32	+0.6
3,511,094	-		EFB2_03354	0.32	+0.9
3,511,096	+		EFB2_03354	0.32	+1.1
3,511,096	+		EFB2_03354	0.32	-3.0
3,511,096	+		EFB2_03354	0.32	+1.1
3,511,096	+		EFB2_03354	0.32	+0.4
3,511,097	-		EFB2_03354	0.32	-3.1
3,511,097	-		EFB2_03354	0.32	-2.6
3,511,119	+		EFB2_03354	0.35	+0.8
3,511,120	-		EFB2_03354	0.35	+0.1
3,511,120	-		EFB2_03354	0.35	-3.2
3,511,195	+		EFB2_03354	0.43	-0.1
3,511,195	+		EFB2_03354	0.43	-0.2
3,511,195	+		EFB2_03354	0.43	-0.3
3,511,196	-		EFB2_03354	0.43	+0.4
3,511,196	-		EFB2_03354	0.43	+0.2
3,511,196	-		EFB2_03354	0.43	+1.0
3,511,196	-		EFB2_03354	0.43	-0.6
3,511,197	+		EFB2_03354	0.43	+0.0
3,511,197	+		EFB2_03354	0.43	-0.8
3,511,197	+		EFB2_03354	0.43	+0.1
3,511,198	-		EFB2_03354	0.43	-2.4
3,511,198	-		EFB2_03354	0.43	+0.8
3,511,198	-		EFB2_03354	0.43	-1.9
3,511,212	+		EFB2_03354	0.45	-2.0
3,511,212	+		EFB2_03354	0.45	+0.3
3,511,213	-		EFB2_03354	0.45	+0.0
3,511,300	+		EFB2_03354	0.54	+0.3
3,511,300	+		EFB2_03354	0.54	+0.7
3,511,301	-		EFB2_03354	0.54	+0.4
3,511,301	-		EFB2_03354	0.54	-1.7
3,511,301	-		EFB2_03354	0.54	-1.3
3,511,303	+		EFB2_03354	0.54	-1.6
3,511,304	-		EFB2_03354	0.54	-0.4
3,511,304	-		EFB2_03354	0.54	-1.7
3,511,318	+		EFB2_03354	0.56	+0.6
3,511,318	+		EFB2_03354	0.56	-1.4
3,511,321	+		EFB2_03354	0.56	+1.5
3,511,321	+		EFB2_03354	0.56	-1.9
3,511,321	+		EFB2_03354	0.56	-1.4
3,511,322	-		EFB2_03354	0.56	+1.3
3,511,322	-		EFB2_03354	0.56	+0.1
3,511,322	-		EFB2_03354	0.56	-2.3
3,511,362	+		EFB2_03354	0.61	-2.3
3,511,362	+		EFB2_03354	0.61	+0.1
3,511,411	+		EFB2_03354	0.66	-0.1
3,511,411	+		EFB2_03354	0.66	-0.3
3,511,411	+		EFB2_03354	0.66	-1.2
3,511,411	+		EFB2_03354	0.66	+0.4
3,511,411	+		EFB2_03354	0.66	-1.9
3,511,411	+		EFB2_03354	0.66	+0.8
3,511,412	-		EFB2_03354	0.66	+0.7
3,511,412	-		EFB2_03354	0.66	+0.3
3,511,412	-		EFB2_03354	0.66	+1.6
3,511,412	-		EFB2_03354	0.66	-0.4
3,511,425	+		EFB2_03354	0.67	+0.1
3,511,426	-		EFB2_03354	0.67	+0.8
3,511,521	+		EFB2_03354	0.77	-0.7
3,511,521	+		EFB2_03354	0.77	+1.4
3,511,521	+		EFB2_03354	0.77	-0.1
3,511,521	+		EFB2_03354	0.77	+2.5
3,511,521	+		EFB2_03354	0.77	-0.8
3,511,521	+		EFB2_03354	0.77	+0.3
3,511,521	+		EFB2_03354	0.77	-0.9
3,511,521	+		EFB2_03354	0.77	-1.0
3,511,521	+		EFB2_03354	0.77	-3.0
3,511,521	+		EFB2_03354	0.77	+0.8
3,511,521	+		EFB2_03354	0.77	-2.5
3,511,521	+		EFB2_03354	0.77	+0.1
3,511,521	+		EFB2_03354	0.77	-2.6
3,511,521	+		EFB2_03354	0.77	-1.7
3,511,521	+		EFB2_03354	0.77	-0.1
3,511,521	+		EFB2_03354	0.77	-0.0
3,511,521	+		EFB2_03354	0.77	+2.5
3,511,521	+		EFB2_03354	0.77	-0.7
3,511,521	+		EFB2_03354	0.77	+1.1
3,511,521	+		EFB2_03354	0.77	-0.2
3,511,521	+		EFB2_03354	0.77	+1.1
3,511,521	+		EFB2_03354	0.77	+1.1
3,511,521	+		EFB2_03354	0.77	+1.2
3,511,521	+		EFB2_03354	0.77	+0.1
3,511,522	-		EFB2_03354	0.78	+0.1
3,511,522	-		EFB2_03354	0.78	-2.7
3,511,522	-		EFB2_03354	0.78	-0.8
3,511,522	-		EFB2_03354	0.78	+1.4
3,511,522	-		EFB2_03354	0.78	-0.4
3,511,522	-		EFB2_03354	0.78	+2.1
3,511,522	-		EFB2_03354	0.78	-0.4
3,511,522	-		EFB2_03354	0.78	-1.9
3,511,522	-		EFB2_03354	0.78	+0.6
3,511,522	-		EFB2_03354	0.78	+0.5
3,511,522	-		EFB2_03354	0.78	+0.9
3,511,522	-		EFB2_03354	0.78	-2.0
3,511,522	-		EFB2_03354	0.78	+0.3
3,511,522	-		EFB2_03354	0.78	+0.1
3,511,522	-		EFB2_03354	0.78	-0.7
3,511,522	-		EFB2_03354	0.78	+1.0
3,511,522	-		EFB2_03354	0.78	+0.3
3,511,522	-		EFB2_03354	0.78	-1.0
3,511,522	-		EFB2_03354	0.78	-2.9
3,511,522	-		EFB2_03354	0.78	+1.3
3,511,522	-		EFB2_03354	0.78	-1.8
3,511,522	-		EFB2_03354	0.78	-0.2
3,511,522	-		EFB2_03354	0.78	-1.9
3,511,522	-		EFB2_03354	0.78	-0.3
3,511,522	-		EFB2_03354	0.78	-2.4
3,511,522	-		EFB2_03354	0.78	+1.3
3,511,522	-		EFB2_03354	0.78	-0.3
3,511,522	-		EFB2_03354	0.78	+2.7
3,511,522	-		EFB2_03354	0.78	-1.4
3,511,522	-		EFB2_03354	0.78	+1.0
3,511,522	-		EFB2_03354	0.78	-0.6
3,511,596	+		EFB2_03354	0.85	-0.9
3,511,596	+		EFB2_03354	0.85	-0.4
3,511,596	+		EFB2_03354	0.85	-0.3
3,511,596	+		EFB2_03354	0.85	+0.9
3,511,596	+		EFB2_03354	0.85	+0.6
3,511,596	+		EFB2_03354	0.85	+2.3
3,511,596	+		EFB2_03354	0.85	-2.7
3,511,597	-		EFB2_03354	0.86	-0.0
3,511,597	-		EFB2_03354	0.86	+0.6
3,511,597	-		EFB2_03354	0.86	+1.6
3,511,597	-		EFB2_03354	0.86	-2.4
3,511,597	-		EFB2_03354	0.86	-0.9
3,511,597	-		EFB2_03354	0.86	-0.4
3,511,613	+		EFB2_03354	0.87	+0.9
3,511,613	+		EFB2_03354	0.87	+3.1
3,511,613	+		EFB2_03354	0.87	-0.3
3,511,613	+		EFB2_03354	0.87	-1.0
3,511,613	+		EFB2_03354	0.87	+1.6
3,511,613	+		EFB2_03354	0.87	+1.4
3,511,613	+		EFB2_03354	0.87	-2.1
3,511,613	+		EFB2_03354	0.87	+0.7
3,511,613	+		EFB2_03354	0.87	-0.8
3,511,613	+		EFB2_03354	0.87	+0.4
3,511,613	+		EFB2_03354	0.87	+0.3
3,511,613	+		EFB2_03354	0.87	+0.2
3,511,614	-		EFB2_03354	0.87	-2.0
3,511,614	-		EFB2_03354	0.87	+2.3
3,511,614	-		EFB2_03354	0.87	-0.9
3,511,614	-		EFB2_03354	0.87	-1.9
3,511,614	-		EFB2_03354	0.87	-0.5
3,511,614	-		EFB2_03354	0.87	+1.6
3,511,628	+		EFB2_03354	0.89	-2.2
3,511,629	-		EFB2_03354	0.89	+0.6
3,511,648	+				+0.3
3,511,649	-				+1.7
3,511,649	-				+1.8
3,511,661	+				+0.7
3,511,661	+				-0.2
3,511,661	+				+0.1
3,511,661	+				-1.5
3,511,661	+				+0.3
3,511,662	-				+0.2
3,511,662	-				+0.1
3,511,800	+				-2.4
3,511,800	+				+0.1
3,511,800	+				-0.2
3,511,801	-		EFB2_03355	0.10	+0.9
3,511,801	-		EFB2_03355	0.10	+0.6
3,511,801	-		EFB2_03355	0.10	-0.9
3,511,801	-		EFB2_03355	0.10	+0.5
3,511,817	+		EFB2_03355	0.12	-2.1
3,511,817	+		EFB2_03355	0.12	+0.7
3,511,817	+		EFB2_03355	0.12	-1.2
3,511,818	-		EFB2_03355	0.12	-2.9
3,511,818	-		EFB2_03355	0.12	+0.1
3,511,835	+		EFB2_03355	0.15	+1.1
3,511,836	-		EFB2_03355	0.15	+0.6
3,511,866	+		EFB2_03355	0.19	+1.6
3,511,866	+		EFB2_03355	0.19	+2.7
3,511,867	-		EFB2_03355	0.19	+1.3
3,511,867	-		EFB2_03355	0.19	+0.2
3,511,875	+		EFB2_03355	0.20	+1.0
3,511,878	+		EFB2_03355	0.21	+1.7
3,511,879	-		EFB2_03355	0.21	-0.9
3,511,879	-		EFB2_03355	0.21	+0.1
3,511,879	-		EFB2_03355	0.21	-0.9
3,511,879	-		EFB2_03355	0.21	+0.1
3,511,879	-		EFB2_03355	0.21	+1.3
3,511,907	+		EFB2_03355	0.25	+1.2
3,511,907	+		EFB2_03355	0.25	+1.8
3,511,907	+		EFB2_03355	0.25	-2.2
3,511,908	-		EFB2_03355	0.25	-2.0
3,511,908	-		EFB2_03355	0.25	-2.2
3,511,908	-		EFB2_03355	0.25	-2.6
3,511,908	-		EFB2_03355	0.25	-3.3
3,511,908	-		EFB2_03355	0.25	-1.8
3,511,911	+		EFB2_03355	0.25	-0.9
3,511,911	+		EFB2_03355	0.25	+0.7
3,511,911	+		EFB2_03355	0.25	+0.6
3,511,911	+		EFB2_03355	0.25	-1.3
3,511,911	+		EFB2_03355	0.25	+4.2
3,511,911	+		EFB2_03355	0.25	+1.3
3,511,912	-		EFB2_03355	0.25	-0.7
3,511,912	-		EFB2_03355	0.25	-0.7
3,511,912	-		EFB2_03355	0.25	-0.2
3,511,912	-		EFB2_03355	0.25	-2.7
3,511,912	-		EFB2_03355	0.25	+1.6
3,511,912	-		EFB2_03355	0.25	-0.6
3,511,912	-		EFB2_03355	0.25	+1.6
3,511,912	-		EFB2_03355	0.25	+0.6
3,511,938	+		EFB2_03355	0.29	+2.6
3,511,938	+		EFB2_03355	0.29	-2.1
3,511,939	-		EFB2_03355	0.29	+1.1
3,511,939	-		EFB2_03355	0.29	-0.6
3,511,942	+		EFB2_03355	0.30	-1.7
3,511,942	+		EFB2_03355	0.30	+2.1
3,511,942	+		EFB2_03355	0.30	-2.2
3,511,942	+		EFB2_03355	0.30	+1.4
3,511,942	+		EFB2_03355	0.30	+1.1
3,511,942	+		EFB2_03355	0.30	-0.8
3,511,942	+		EFB2_03355	0.30	-0.9
3,511,943	-		EFB2_03355	0.30	-0.2
3,511,943	-		EFB2_03355	0.30	-3.8
3,511,943	-		EFB2_03355	0.30	-2.2
3,511,943	-		EFB2_03355	0.30	-2.2
3,511,943	-		EFB2_03355	0.30	+0.5
3,511,943	-		EFB2_03355	0.30	+2.0
3,511,943	-		EFB2_03355	0.30	+1.5
3,511,943	-		EFB2_03355	0.30	-1.2
3,511,943	-		EFB2_03355	0.30	-1.8
3,511,943	-		EFB2_03355	0.30	+0.5
3,511,943	-		EFB2_03355	0.30	+0.1
3,511,987	+		EFB2_03355	0.36	-1.7
3,511,987	+		EFB2_03355	0.36	+0.8
3,511,988	-		EFB2_03355	0.36	+0.4
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3,513,447	+				+2.0