Strain Fitness in Escherichia fergusonii Becca around EFB2_03286

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,438,150	+		EFB2_03285	0.55	-1.5
3,438,150	+		EFB2_03285	0.55	+0.5
3,438,150	+		EFB2_03285	0.55	+0.1
3,438,150	+		EFB2_03285	0.55	+0.3
3,438,150	+		EFB2_03285	0.55	+0.1
3,438,150	+		EFB2_03285	0.55	-1.2
3,438,150	+		EFB2_03285	0.55	-0.4
3,438,150	+		EFB2_03285	0.55	+0.8
3,438,150	+		EFB2_03285	0.55	-0.3
3,438,150	+		EFB2_03285	0.55	-1.3
3,438,150	+		EFB2_03285	0.55	+0.5
3,438,150	+		EFB2_03285	0.55	+0.9
3,438,150	+		EFB2_03285	0.55	-0.2
3,438,150	+		EFB2_03285	0.55	-0.9
3,438,150	+		EFB2_03285	0.55	-1.7
3,438,150	+		EFB2_03285	0.55	-1.0
3,438,150	+		EFB2_03285	0.55	-2.0
3,438,150	+		EFB2_03285	0.55	+0.7
3,438,150	+		EFB2_03285	0.55	-2.7
3,438,150	+		EFB2_03285	0.55	-0.5
3,438,150	+		EFB2_03285	0.55	-0.4
3,438,150	+		EFB2_03285	0.55	-0.3
3,438,150	+		EFB2_03285	0.55	+2.9
3,438,150	+		EFB2_03285	0.55	-1.3
3,438,151	-		EFB2_03285	0.55	+0.2
3,438,151	-		EFB2_03285	0.55	-2.4
3,438,151	-		EFB2_03285	0.55	-2.4
3,438,151	-		EFB2_03285	0.55	+0.2
3,438,151	-		EFB2_03285	0.55	-1.6
3,438,151	-		EFB2_03285	0.55	+1.2
3,438,151	-		EFB2_03285	0.55	+1.4
3,438,151	-		EFB2_03285	0.55	+2.7
3,438,151	-		EFB2_03285	0.55	+0.8
3,438,151	-		EFB2_03285	0.55	-0.2
3,438,151	-		EFB2_03285	0.55	-0.5
3,438,151	-		EFB2_03285	0.55	+1.6
3,438,151	-		EFB2_03285	0.55	-0.1
3,438,151	-		EFB2_03285	0.55	+0.7
3,438,151	-		EFB2_03285	0.55	-0.3
3,438,151	-		EFB2_03285	0.55	-0.4
3,438,151	-		EFB2_03285	0.55	+0.7
3,438,151	-		EFB2_03285	0.55	+1.4
3,438,151	-		EFB2_03285	0.55	+1.0
3,438,151	-		EFB2_03285	0.55	-1.1
3,438,151	-		EFB2_03285	0.55	-2.5
3,438,151	-		EFB2_03285	0.55	-0.9
3,438,151	-		EFB2_03285	0.55	+0.9
3,438,151	-		EFB2_03285	0.55	+0.7
3,438,151	-		EFB2_03285	0.55	-3.2
3,438,151	-		EFB2_03285	0.55	+2.0
3,438,159	+		EFB2_03285	0.55	-0.1
3,438,159	+		EFB2_03285	0.55	+0.4
3,438,159	+		EFB2_03285	0.55	-0.2
3,438,159	+		EFB2_03285	0.55	-1.6
3,438,159	+		EFB2_03285	0.55	+0.4
3,438,159	+		EFB2_03285	0.55	-0.5
3,438,159	+		EFB2_03285	0.55	+1.4
3,438,159	+		EFB2_03285	0.55	-1.3
3,438,159	+		EFB2_03285	0.55	+0.9
3,438,159	+		EFB2_03285	0.55	+1.1
3,438,159	+		EFB2_03285	0.55	-0.3
3,438,159	+		EFB2_03285	0.55	+0.4
3,438,160	-		EFB2_03285	0.55	+1.6
3,438,160	-		EFB2_03285	0.55	-1.0
3,438,160	-		EFB2_03285	0.55	+0.5
3,438,160	-		EFB2_03285	0.55	+0.7
3,438,160	-		EFB2_03285	0.55	-2.0
3,438,160	-		EFB2_03285	0.55	-0.3
3,438,160	-		EFB2_03285	0.55	-3.4
3,438,160	-		EFB2_03285	0.55	-1.0
3,438,160	-		EFB2_03285	0.55	+0.3
3,438,160	-		EFB2_03285	0.55	-1.0
3,438,160	-		EFB2_03285	0.55	+0.1
3,438,160	-		EFB2_03285	0.55	+0.1
3,438,171	+		EFB2_03285	0.56	+0.3
3,438,190	-		EFB2_03285	0.57	-2.3
3,438,211	+		EFB2_03285	0.59	-0.8
3,438,212	-		EFB2_03285	0.59	-0.5
3,438,212	-		EFB2_03285	0.59	+1.0
3,438,223	+		EFB2_03285	0.59	+0.5
3,438,224	-		EFB2_03285	0.60	-2.3
3,438,420	+		EFB2_03285	0.72	+1.0
3,438,421	-		EFB2_03285	0.72	+0.5
3,438,483	+		EFB2_03285	0.76	-1.2
3,438,484	-		EFB2_03285	0.76	+1.0
3,438,484	-		EFB2_03285	0.76	-0.5
3,438,526	+		EFB2_03285	0.78	-2.0
3,438,526	+		EFB2_03285	0.78	+2.3
3,438,526	+		EFB2_03285	0.78	+1.7
3,438,527	-		EFB2_03285	0.79	-2.8
3,438,527	-		EFB2_03285	0.79	-1.2
3,438,527	-		EFB2_03285	0.79	-0.7
3,438,527	-		EFB2_03285	0.79	+0.1
3,438,527	-		EFB2_03285	0.79	-0.2
3,438,527	-		EFB2_03285	0.79	+3.7
3,438,527	-		EFB2_03285	0.79	-2.3
3,438,528	+		EFB2_03285	0.79	+2.1
3,438,529	-		EFB2_03285	0.79	-3.2
3,438,561	+		EFB2_03285	0.81	+2.3
3,438,561	+		EFB2_03285	0.81	+0.1
3,438,561	+		EFB2_03285	0.81	+0.6
3,438,561	+		EFB2_03285	0.81	-0.1
3,438,561	+		EFB2_03285	0.81	-0.0
3,438,561	+		EFB2_03285	0.81	-0.1
3,438,561	+		EFB2_03285	0.81	-1.9
3,438,561	+		EFB2_03285	0.81	-1.1
3,438,561	+		EFB2_03285	0.81	+1.0
3,438,561	+		EFB2_03285	0.81	-1.3
3,438,561	+		EFB2_03285	0.81	-0.2
3,438,561	+		EFB2_03285	0.81	+0.3
3,438,561	+		EFB2_03285	0.81	-1.1
3,438,562	-		EFB2_03285	0.81	-2.1
3,438,562	-		EFB2_03285	0.81	-1.1
3,438,562	-		EFB2_03285	0.81	+0.5
3,438,562	-		EFB2_03285	0.81	-1.3
3,438,562	-		EFB2_03285	0.81	+0.7
3,438,562	-		EFB2_03285	0.81	-2.0
3,438,562	-		EFB2_03285	0.81	+1.1
3,438,562	-		EFB2_03285	0.81	+1.1
3,438,562	-		EFB2_03285	0.81	-0.0
3,438,562	-		EFB2_03285	0.81	-1.9
3,438,602	-		EFB2_03285	0.83	-0.7
3,438,602	-		EFB2_03285	0.83	-0.2
3,438,667	+		EFB2_03285	0.87	-1.8
3,438,667	+		EFB2_03285	0.87	-2.1
3,438,667	+		EFB2_03285	0.87	-2.0
3,438,716	+				-0.5
3,438,716	+				-0.9
3,438,717	-				-0.7
3,438,717	-				-2.4
3,438,717	-				+0.1
3,438,717	-				+0.4
3,438,717	-				+0.8
3,438,739	+				+1.3
3,438,739	+				-0.3
3,438,740	-				-0.2
3,438,740	-				+0.4
3,438,751	+				-3.0
3,438,751	+				-1.0
3,438,751	+				+1.6
3,438,751	+				-0.5
3,438,751	+				-1.9
3,438,752	-				+1.0
3,438,752	-				+0.6
3,438,752	-				+1.2
3,438,752	-				-0.3
3,438,757	+				-2.3
3,438,863	+				-0.5
3,438,863	+				-1.7
3,438,863	+				+1.2
3,438,864	-				-2.1
3,438,890	-				+0.5
3,438,890	-				-1.0
3,438,906	+				+1.5
3,438,906	+				+0.4
3,438,906	+				-0.5
3,438,906	+				-1.7
3,438,906	+				-0.3
3,438,906	+				-2.0
3,438,907	-				+1.6
3,438,907	-				-2.1
3,438,950	+				-3.2
3,438,950	+				+1.1
3,438,950	+				+0.8
3,438,950	+				-2.0
3,438,951	-				-1.2
3,438,951	-				+0.7
3,438,951	-				-0.0
3,438,951	-				+0.4
3,438,951	-				+0.1
3,438,985	-				-3.0
3,439,019	+				+1.3
3,439,019	+				+1.8
3,439,019	+				+1.6
3,439,019	+				+0.9
3,439,019	+				-0.7
3,439,019	+				-1.9
3,439,019	+				-1.8
3,439,019	+				-2.0
3,439,019	+				+1.0
3,439,019	+				-2.3
3,439,019	+				+1.2
3,439,019	+				-1.7
3,439,019	+				-0.3
3,439,019	+				-1.5
3,439,020	-				-0.6
3,439,020	-				-0.7
3,439,020	-				-0.7
3,439,020	-				+1.4
3,439,020	-				+0.8
3,439,020	-				-0.9
3,439,020	-				+1.0
3,439,020	-				+0.3
3,439,020	-				-1.1
3,439,020	-				+0.3
3,439,020	-				+1.3
3,439,020	-				-0.7
3,439,020	-				+0.3
3,439,021	+				-0.5
3,439,021	+				-0.7
3,439,021	+				-0.5
3,439,021	+				+1.4
3,439,021	+				+0.0
3,439,021	+				-0.9
3,439,021	+				+1.0
3,439,021	+				-0.3
3,439,022	-				-0.5
3,439,022	-				-0.5
3,439,022	-				+0.7
3,439,022	-				-2.6
3,439,022	-				-0.1
3,439,022	-				+1.6
3,439,022	-				-2.0
3,439,022	-				-2.4
3,439,022	-				-1.6
3,439,022	-				-1.8
3,439,022	-				-0.1
3,439,022	-				+2.8
3,439,035	+				-0.4
3,439,035	+				-0.7
3,439,036	-				-0.0
3,439,036	-				-0.2
3,439,036	-				-0.5
3,439,040	+				-0.5
3,439,040	+				-0.8
3,439,040	+				+0.8
3,439,040	+				+0.5
3,439,040	+				-2.0
3,439,040	+				-1.5
3,439,040	+				-0.2
3,439,040	+				+1.0
3,439,040	+				-0.4
3,439,040	+				+0.7
3,439,040	+				+0.7
3,439,040	+				+0.9
3,439,041	-				-0.1
3,439,041	-				+2.5
3,439,041	-				+0.8
3,439,041	-				+0.1
3,439,041	-				-1.8
3,439,041	-				-0.7
3,439,041	-				-0.3
3,439,041	-				+4.1
3,439,043	+				+0.2
3,439,043	+				-0.2
3,439,043	+				-0.7
3,439,044	-				-0.8
3,439,044	-				-2.0
3,439,044	-				-0.0
3,439,084	-				+0.9
3,439,092	+				+0.8
3,439,093	-				+3.5
3,439,110	-				-0.7
3,439,160	+				-0.1
3,439,160	+				+0.1
3,439,160	+				-0.2
3,439,165	+				-1.9
3,439,165	+				-0.7
3,439,165	+				-2.3
3,439,165	+				-0.4
3,439,165	+				+1.3
3,439,165	+				-2.8
3,439,165	+				+0.4
3,439,166	-				-0.3
3,439,166	-				-0.1
3,439,166	-				+0.4
3,439,166	-				+1.0
3,439,166	-				-1.6
3,439,166	-				+1.5
3,439,166	-				-0.3
3,439,166	-				+1.6
3,439,166	-				-1.7
3,439,230	+		EFB2_03286	0.16	+2.4
3,439,230	+		EFB2_03286	0.16	+0.9
3,439,230	+		EFB2_03286	0.16	+1.9
3,439,231	-		EFB2_03286	0.16	-2.6
3,439,231	-		EFB2_03286	0.16	-0.2
3,439,231	-		EFB2_03286	0.16	+2.7
3,439,249	+		EFB2_03286	0.18	+2.1
3,439,249	+		EFB2_03286	0.18	-0.5
3,439,249	+		EFB2_03286	0.18	+0.7
3,439,284	+		EFB2_03286	0.21	+1.6
3,439,284	+		EFB2_03286	0.21	+0.6
3,439,284	+		EFB2_03286	0.21	-0.3
3,439,284	+		EFB2_03286	0.21	+1.7
3,439,284	+		EFB2_03286	0.21	-0.2
3,439,337	+		EFB2_03286	0.27	-1.7
3,439,337	+		EFB2_03286	0.27	+1.0
3,439,337	+		EFB2_03286	0.27	-2.0
3,439,337	+		EFB2_03286	0.27	-2.1
3,439,337	+		EFB2_03286	0.27	+2.2
3,439,337	+		EFB2_03286	0.27	-0.5
3,439,338	-		EFB2_03286	0.27	-1.7
3,439,338	-		EFB2_03286	0.27	-0.2
3,439,338	-		EFB2_03286	0.27	-0.7
3,439,417	+		EFB2_03286	0.36	-2.2
3,439,417	+		EFB2_03286	0.36	-0.4
3,439,417	+		EFB2_03286	0.36	-0.8
3,439,417	+		EFB2_03286	0.36	-0.0
3,439,417	+		EFB2_03286	0.36	+1.0
3,439,417	+		EFB2_03286	0.36	-0.0
3,439,417	+		EFB2_03286	0.36	-1.5
3,439,417	+		EFB2_03286	0.36	-0.5
3,439,417	+		EFB2_03286	0.36	+2.9
3,439,417	+		EFB2_03286	0.36	+0.9
3,439,417	+		EFB2_03286	0.36	+0.0
3,439,417	+		EFB2_03286	0.36	+0.3
3,439,418	-		EFB2_03286	0.36	-0.4
3,439,418	-		EFB2_03286	0.36	+1.0
3,439,418	-		EFB2_03286	0.36	+0.2
3,439,418	-		EFB2_03286	0.36	-0.4
3,439,418	-		EFB2_03286	0.36	+0.4
3,439,418	-		EFB2_03286	0.36	+1.4
3,439,420	+		EFB2_03286	0.36	+0.4
3,439,420	+		EFB2_03286	0.36	+1.2
3,439,420	+		EFB2_03286	0.36	-0.8
3,439,420	+		EFB2_03286	0.36	+0.9
3,439,420	+		EFB2_03286	0.36	+2.8
3,439,420	+		EFB2_03286	0.36	+3.1
3,439,420	+		EFB2_03286	0.36	-0.6
3,439,420	+		EFB2_03286	0.36	-2.7
3,439,421	-		EFB2_03286	0.36	-1.3
3,439,421	-		EFB2_03286	0.36	-0.5
3,439,421	-		EFB2_03286	0.36	+0.9
3,439,421	-		EFB2_03286	0.36	-2.5
3,439,421	-		EFB2_03286	0.36	+0.7
3,439,421	-		EFB2_03286	0.36	+0.3
3,439,423	+		EFB2_03286	0.36	+0.8
3,439,424	-		EFB2_03286	0.37	+2.4
3,439,476	-		EFB2_03286	0.42	-1.7
3,439,492	-		EFB2_03286	0.44	-0.7
3,439,568	-		EFB2_03286	0.52	+1.2
3,439,568	-		EFB2_03286	0.52	-0.9
3,439,633	+		EFB2_03286	0.59	+0.1
3,439,633	+		EFB2_03286	0.59	-0.4
3,439,633	+		EFB2_03286	0.59	+1.0
3,439,633	+		EFB2_03286	0.59	+0.9
3,439,633	+		EFB2_03286	0.59	+0.4
3,439,634	-		EFB2_03286	0.59	+0.5
3,439,634	-		EFB2_03286	0.59	+1.6
3,439,634	-		EFB2_03286	0.59	+1.1
3,439,634	-		EFB2_03286	0.59	-1.7
3,439,634	-		EFB2_03286	0.59	+0.3
3,439,634	-		EFB2_03286	0.59	-1.2
3,439,634	-		EFB2_03286	0.59	-0.1
3,439,642	+		EFB2_03286	0.60	+3.0
3,439,642	+		EFB2_03286	0.60	-0.9
3,439,642	+		EFB2_03286	0.60	-0.7
3,439,642	+		EFB2_03286	0.60	+1.0
3,439,642	+		EFB2_03286	0.60	+0.2
3,439,642	+		EFB2_03286	0.60	+0.2
3,439,642	+		EFB2_03286	0.60	+1.1
3,439,642	+		EFB2_03286	0.60	-0.1
3,439,643	-		EFB2_03286	0.60	-0.7
3,439,643	-		EFB2_03286	0.60	+1.8
3,439,643	-		EFB2_03286	0.60	+0.5
3,439,643	-		EFB2_03286	0.60	-0.9
3,439,643	-		EFB2_03286	0.60	+2.2
3,439,643	-		EFB2_03286	0.60	+1.1
3,439,657	+		EFB2_03286	0.62	-0.2
3,439,657	+		EFB2_03286	0.62	+0.2
3,439,657	+		EFB2_03286	0.62	-2.8
3,439,657	+		EFB2_03286	0.62	-1.8
3,439,657	+		EFB2_03286	0.62	-2.5
3,439,657	+		EFB2_03286	0.62	+2.0
3,439,658	-		EFB2_03286	0.62	+1.4
3,439,658	-		EFB2_03286	0.62	+1.5
3,439,703	+		EFB2_03286	0.67	+1.0
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