Strain Fitness in Escherichia fergusonii Becca around EFB2_03208

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,366,877	+		EFB2_03207	0.42	-1.0
3,366,877	+		EFB2_03207	0.42	-1.5
3,366,905	+		EFB2_03207	0.45	+1.3
3,366,905	+		EFB2_03207	0.45	-0.7
3,366,905	+		EFB2_03207	0.45	+0.5
3,366,905	+		EFB2_03207	0.45	-2.4
3,366,905	+		EFB2_03207	0.45	-0.7
3,366,906	-		EFB2_03207	0.45	-0.7
3,366,906	-		EFB2_03207	0.45	-0.0
3,366,906	-		EFB2_03207	0.45	+1.9
3,366,906	-		EFB2_03207	0.45	+0.9
3,366,906	-		EFB2_03207	0.45	+0.0
3,366,906	-		EFB2_03207	0.45	+1.4
3,366,906	-		EFB2_03207	0.45	-1.0
3,366,906	-		EFB2_03207	0.45	-0.5
3,366,918	+		EFB2_03207	0.46	-2.9
3,366,918	+		EFB2_03207	0.46	-2.9
3,366,918	+		EFB2_03207	0.46	+0.5
3,366,918	+		EFB2_03207	0.46	-0.9
3,366,918	+		EFB2_03207	0.46	+1.0
3,366,918	+		EFB2_03207	0.46	+1.9
3,366,919	-		EFB2_03207	0.46	+0.9
3,366,927	+		EFB2_03207	0.47	+1.3
3,366,927	+		EFB2_03207	0.47	-0.4
3,366,927	+		EFB2_03207	0.47	+0.0
3,366,927	+		EFB2_03207	0.47	-0.3
3,366,927	+		EFB2_03207	0.47	+0.7
3,366,928	-		EFB2_03207	0.47	-2.7
3,366,928	-		EFB2_03207	0.47	-0.2
3,366,945	-		EFB2_03207	0.48	+1.0
3,366,945	-		EFB2_03207	0.48	-0.1
3,366,958	-		EFB2_03207	0.49	+1.5
3,367,047	+		EFB2_03207	0.57	-0.8
3,367,080	+		EFB2_03207	0.60	-2.5
3,367,080	+		EFB2_03207	0.60	-0.1
3,367,081	-		EFB2_03207	0.60	-2.1
3,367,081	-		EFB2_03207	0.60	-0.1
3,367,087	-		EFB2_03207	0.61	-3.0
3,367,095	+		EFB2_03207	0.62	+0.5
3,367,095	+		EFB2_03207	0.62	-0.7
3,367,096	-		EFB2_03207	0.62	-0.1
3,367,096	-		EFB2_03207	0.62	-0.4
3,367,097	+		EFB2_03207	0.62	-0.2
3,367,097	+		EFB2_03207	0.62	-0.5
3,367,098	-		EFB2_03207	0.62	+0.4
3,367,122	+		EFB2_03207	0.64	-2.3
3,367,122	+		EFB2_03207	0.64	-1.3
3,367,122	+		EFB2_03207	0.64	+0.8
3,367,122	+		EFB2_03207	0.64	-2.5
3,367,122	+		EFB2_03207	0.64	-2.0
3,367,122	+		EFB2_03207	0.64	-0.2
3,367,122	+		EFB2_03207	0.64	+0.1
3,367,122	+		EFB2_03207	0.64	-3.0
3,367,122	+		EFB2_03207	0.64	-0.7
3,367,122	+		EFB2_03207	0.64	-0.5
3,367,122	+		EFB2_03207	0.64	-2.4
3,367,122	+		EFB2_03207	0.64	-3.6
3,367,122	+		EFB2_03207	0.64	-0.4
3,367,122	+		EFB2_03207	0.64	+0.4
3,367,122	+		EFB2_03207	0.64	-0.9
3,367,122	+		EFB2_03207	0.64	-1.2
3,367,122	+		EFB2_03207	0.64	-0.5
3,367,123	-		EFB2_03207	0.64	-0.5
3,367,123	-		EFB2_03207	0.64	-1.1
3,367,123	-		EFB2_03207	0.64	-1.0
3,367,123	-		EFB2_03207	0.64	+1.1
3,367,123	-		EFB2_03207	0.64	+1.7
3,367,123	-		EFB2_03207	0.64	+1.0
3,367,123	-		EFB2_03207	0.64	-0.7
3,367,123	-		EFB2_03207	0.64	-3.7
3,367,123	-		EFB2_03207	0.64	-2.3
3,367,123	-		EFB2_03207	0.64	-3.4
3,367,123	-		EFB2_03207	0.64	+0.5
3,367,123	-		EFB2_03207	0.64	+3.6
3,367,123	-		EFB2_03207	0.64	-2.6
3,367,123	-		EFB2_03207	0.64	+1.1
3,367,123	-		EFB2_03207	0.64	-0.3
3,367,123	-		EFB2_03207	0.64	+0.6
3,367,123	-		EFB2_03207	0.64	+0.5
3,367,123	-		EFB2_03207	0.64	+1.4
3,367,124	+		EFB2_03207	0.64	+1.8
3,367,124	+		EFB2_03207	0.64	-1.0
3,367,124	+		EFB2_03207	0.64	-1.0
3,367,124	+		EFB2_03207	0.64	+0.1
3,367,124	+		EFB2_03207	0.64	+1.9
3,367,124	+		EFB2_03207	0.64	+0.2
3,367,124	+		EFB2_03207	0.64	-2.0
3,367,124	+		EFB2_03207	0.64	-1.1
3,367,124	+		EFB2_03207	0.64	-1.7
3,367,124	+		EFB2_03207	0.64	-0.5
3,367,124	+		EFB2_03207	0.64	+0.9
3,367,124	+		EFB2_03207	0.64	+2.3
3,367,124	+		EFB2_03207	0.64	+1.9
3,367,124	+		EFB2_03207	0.64	-2.1
3,367,124	+		EFB2_03207	0.64	-1.3
3,367,124	+		EFB2_03207	0.64	+1.1
3,367,124	+		EFB2_03207	0.64	-0.9
3,367,124	+		EFB2_03207	0.64	+0.3
3,367,124	+		EFB2_03207	0.64	+2.4
3,367,124	+		EFB2_03207	0.64	-0.9
3,367,124	+		EFB2_03207	0.64	-1.5
3,367,124	+		EFB2_03207	0.64	+2.8
3,367,124	+		EFB2_03207	0.64	+0.5
3,367,124	+		EFB2_03207	0.64	+1.9
3,367,124	+		EFB2_03207	0.64	+0.1
3,367,124	+		EFB2_03207	0.64	+2.1
3,367,124	+		EFB2_03207	0.64	-1.5
3,367,124	+		EFB2_03207	0.64	-2.5
3,367,124	+		EFB2_03207	0.64	+1.7
3,367,125	-		EFB2_03207	0.64	+0.4
3,367,125	-		EFB2_03207	0.64	-1.3
3,367,125	-		EFB2_03207	0.64	+1.1
3,367,125	-		EFB2_03207	0.64	-0.4
3,367,125	-		EFB2_03207	0.64	-1.8
3,367,125	-		EFB2_03207	0.64	+1.1
3,367,125	-		EFB2_03207	0.64	-0.3
3,367,125	-		EFB2_03207	0.64	-1.3
3,367,125	-		EFB2_03207	0.64	-1.0
3,367,125	-		EFB2_03207	0.64	+1.6
3,367,125	-		EFB2_03207	0.64	-0.9
3,367,125	-		EFB2_03207	0.64	-2.6
3,367,125	-		EFB2_03207	0.64	-1.0
3,367,125	-		EFB2_03207	0.64	-0.2
3,367,125	-		EFB2_03207	0.64	-2.1
3,367,125	-		EFB2_03207	0.64	-1.2
3,367,125	-		EFB2_03207	0.64	-0.5
3,367,125	-		EFB2_03207	0.64	+1.4
3,367,131	+		EFB2_03207	0.65	-0.4
3,367,141	-		EFB2_03207	0.66	+0.3
3,367,215	+		EFB2_03207	0.72	+1.1
3,367,216	-		EFB2_03207	0.73	+0.4
3,367,306	+		EFB2_03207	0.81	-0.3
3,367,307	-		EFB2_03207	0.81	-1.1
3,367,307	-		EFB2_03207	0.81	+0.5
3,367,322	-		EFB2_03207	0.82	-1.7
3,367,322	-		EFB2_03207	0.82	+0.1
3,367,322	-		EFB2_03207	0.82	-2.0
3,367,322	-		EFB2_03207	0.82	+0.4
3,367,322	-		EFB2_03207	0.82	-2.3
3,367,322	-		EFB2_03207	0.82	-1.9
3,367,329	+		EFB2_03207	0.83	+0.1
3,367,329	+		EFB2_03207	0.83	-2.4
3,367,329	+		EFB2_03207	0.83	+0.1
3,367,330	-		EFB2_03207	0.83	-0.7
3,367,330	-		EFB2_03207	0.83	-0.5
3,367,346	+		EFB2_03207	0.84	-1.2
3,367,346	+		EFB2_03207	0.84	-1.5
3,367,346	+		EFB2_03207	0.84	+1.2
3,367,346	+		EFB2_03207	0.84	-1.2
3,367,347	-		EFB2_03207	0.84	+0.6
3,367,347	-		EFB2_03207	0.84	-2.0
3,367,356	+		EFB2_03207	0.85	-2.5
3,367,356	+		EFB2_03207	0.85	-2.1
3,367,356	+		EFB2_03207	0.85	-0.9
3,367,356	+		EFB2_03207	0.85	+1.4
3,367,356	+		EFB2_03207	0.85	-2.4
3,367,357	-		EFB2_03207	0.85	+0.4
3,367,357	-		EFB2_03207	0.85	-0.0
3,367,357	-		EFB2_03207	0.85	+0.1
3,367,360	-		EFB2_03207	0.85	+1.3
3,367,401	+		EFB2_03207	0.89	+0.0
3,367,402	-		EFB2_03207	0.89	-0.2
3,367,402	-		EFB2_03207	0.89	-2.1
3,367,402	-		EFB2_03207	0.89	-2.1
3,367,402	-		EFB2_03207	0.89	+1.3
3,367,402	-		EFB2_03207	0.89	-2.0
3,367,403	+		EFB2_03207	0.89	+0.5
3,367,403	+		EFB2_03207	0.89	-1.6
3,367,403	+		EFB2_03207	0.89	-2.6
3,367,403	+		EFB2_03207	0.89	-0.2
3,367,404	-		EFB2_03207	0.89	+1.0
3,367,404	-		EFB2_03207	0.89	-0.7
3,367,404	-		EFB2_03207	0.89	-1.0
3,367,404	-		EFB2_03207	0.89	-1.5
3,367,404	-		EFB2_03207	0.89	+0.2
3,367,404	-		EFB2_03207	0.89	-1.0
3,367,404	-		EFB2_03207	0.89	+0.0
3,367,404	-		EFB2_03207	0.89	+0.1
3,367,404	-		EFB2_03207	0.89	+1.3
3,367,404	-		EFB2_03207	0.89	-0.6
3,367,404	-		EFB2_03207	0.89	-0.7
3,367,416	+				-0.2
3,367,416	+				+1.4
3,367,416	+				+2.0
3,367,417	-				+0.6
3,367,417	-				+0.2
3,367,418	+				+1.1
3,367,418	+				+1.4
3,367,418	+				+2.1
3,367,418	+				-1.7
3,367,418	+				+1.3
3,367,418	+				-1.2
3,367,418	+				-0.2
3,367,418	+				-1.3
3,367,419	-				+2.1
3,367,419	-				-2.4
3,367,419	-				+0.8
3,367,419	-				-0.8
3,367,419	-				-0.1
3,367,419	-				-1.4
3,367,419	-				+0.5
3,367,419	-				+0.1
3,367,419	-				-1.8
3,367,419	-				-1.7
3,367,419	-				-2.7
3,367,419	-				-2.8
3,367,419	-				+0.9
3,367,506	+				+1.1
3,367,507	-				-0.2
3,367,510	+				+0.6
3,367,510	+				-1.6
3,367,510	+				+2.1
3,367,510	+				-1.2
3,367,510	+				+0.5
3,367,510	+				-1.0
3,367,510	+				-0.0
3,367,510	+				+2.1
3,367,510	+				-1.3
3,367,510	+				-0.2
3,367,510	+				-0.4
3,367,510	+				+2.1
3,367,510	+				-1.4
3,367,510	+				+0.2
3,367,510	+				+2.4
3,367,511	-				+1.6
3,367,511	-				+0.1
3,367,511	-				-1.5
3,367,511	-				-3.0
3,367,511	-				-1.9
3,367,511	-				+0.7
3,367,511	-				-0.4
3,367,511	-				-1.0
3,367,511	-				+2.1
3,367,511	-				-2.2
3,367,511	-				-0.3
3,367,511	-				+0.7
3,367,511	-				+1.0
3,367,511	-				+1.3
3,367,511	-				+1.0
3,367,511	-				+0.1
3,367,511	-				-0.3
3,367,511	-				-1.3
3,367,511	-				+0.8
3,367,521	+				-0.1
3,367,521	+				-3.2
3,367,521	+				+0.8
3,367,521	+				+1.0
3,367,521	+				+0.5
3,367,521	+				+0.7
3,367,521	+				+1.0
3,367,522	-				+0.5
3,367,522	-				+0.5
3,367,522	-				-0.4
3,367,522	-				-0.8
3,367,522	-				-1.0
3,367,522	-				+0.5
3,367,522	-				+0.6
3,367,579	+				+0.6
3,367,580	-				+0.3
3,367,616	-				-0.5
3,367,616	-				-0.5
3,367,653	+				-0.5
3,367,653	+				+0.6
3,367,653	+				+0.1
3,367,653	+				+0.7
3,367,653	+				+0.1
3,367,654	-				-1.0
3,367,654	-				+2.1
3,367,655	+				-0.0
3,367,655	+				+1.4
3,367,655	+				-2.7
3,367,655	+				+1.0
3,367,655	+				-0.8
3,367,655	+				+0.4
3,367,655	+				+0.4
3,367,655	+				-0.3
3,367,655	+				+0.1
3,367,655	+				+0.5
3,367,655	+				+0.1
3,367,655	+				-0.7
3,367,655	+				-1.8
3,367,655	+				-0.2
3,367,655	+				+0.4
3,367,655	+				+0.5
3,367,655	+				-0.1
3,367,655	+				-1.0
3,367,655	+				-0.0
3,367,656	-				+3.1
3,367,656	-				+1.2
3,367,656	-				-2.0
3,367,656	-				+0.1
3,367,656	-				+1.2
3,367,656	-				-0.1
3,367,656	-				-0.1
3,367,656	-				-2.3
3,367,656	-				-0.2
3,367,656	-				-1.4
3,367,657	+				+0.5
3,367,657	+				-0.9
3,367,657	+				-3.7
3,367,657	+				-1.2
3,367,657	+				+1.1
3,367,657	+				+0.5
3,367,658	-				-2.0
3,367,658	-				+1.5
3,367,658	-				-1.1
3,367,658	-				+0.2
3,367,674	+				-1.0
3,367,674	+				+1.2
3,367,674	+				+0.5
3,367,674	+				+0.8
3,367,674	+				+1.9
3,367,697	+				-2.2
3,367,697	+				-1.2
3,367,697	+				+0.3
3,367,697	+				-0.0
3,367,698	-				-2.7
3,367,698	-				+0.1
3,367,698	-				-1.1
3,367,698	-				+0.7
3,367,698	-				+0.1
3,367,698	-				-2.3
3,367,699	+				-3.0
3,367,699	+				+1.2
3,367,699	+				+0.0
3,367,699	+				-0.5
3,367,699	+				-2.3
3,367,699	+				-2.3
3,367,700	-				-0.4
3,367,700	-				+0.0
3,367,700	-				+0.7
3,367,700	-				+1.0
3,367,700	-				-1.6
3,367,700	-				+0.9
3,367,700	-				-0.4
3,367,750	-				-0.5
3,367,787	-				-1.3
3,367,869	+				-0.1
3,367,869	+				+0.1
3,367,869	+				-2.3
3,367,869	+				-2.0
3,367,870	-				-0.1
3,367,870	-				+0.1
3,367,884	+				+0.0
3,367,884	+				+0.0
3,367,885	-				+0.4
3,367,885	-				+1.5
3,367,901	-				+1.3
3,367,901	-				+0.4
3,367,901	-				-0.0
3,367,926	-		EFB2_03208	0.12	+0.7
3,367,945	+		EFB2_03208	0.16	+1.5
3,367,945	+		EFB2_03208	0.16	-0.4
3,367,945	+		EFB2_03208	0.16	-0.4
3,367,945	+		EFB2_03208	0.16	+2.1
3,367,946	-		EFB2_03208	0.16	-1.2
3,367,946	-		EFB2_03208	0.16	-2.2
3,367,946	-		EFB2_03208	0.16	-2.7
3,367,946	-		EFB2_03208	0.16	-2.2
3,368,010	+		EFB2_03208	0.29	-1.2
3,368,010	+		EFB2_03208	0.29	-1.6
3,368,010	+		EFB2_03208	0.29	+1.2
3,368,010	+		EFB2_03208	0.29	+1.0
3,368,010	+		EFB2_03208	0.29	-0.6
3,368,010	+		EFB2_03208	0.29	-1.9
3,368,010	+		EFB2_03208	0.29	-1.5
3,368,010	+		EFB2_03208	0.29	+0.8
3,368,010	+		EFB2_03208	0.29	-1.5
3,368,011	-		EFB2_03208	0.29	+0.4
3,368,011	-		EFB2_03208	0.29	+0.7
3,368,011	-		EFB2_03208	0.29	-2.3
3,368,011	-		EFB2_03208	0.29	-3.0
3,368,011	-		EFB2_03208	0.29	-2.1
3,368,011	-		EFB2_03208	0.29	+0.0
3,368,011	-		EFB2_03208	0.29	+0.4
3,368,011	-		EFB2_03208	0.29	+1.0
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