Strain Fitness in Escherichia fergusonii Becca around EFB2_03184

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,341,607	-		EFB2_03183	0.22	-2.7
3,341,637	+		EFB2_03183	0.25	-1.5
3,341,637	+		EFB2_03183	0.25	-2.1
3,341,637	+		EFB2_03183	0.25	-0.4
3,341,637	+		EFB2_03183	0.25	+2.7
3,341,638	-		EFB2_03183	0.25	+0.2
3,341,638	-		EFB2_03183	0.25	+1.6
3,341,638	-		EFB2_03183	0.25	+3.5
3,341,653	+		EFB2_03183	0.26	+0.5
3,341,653	+		EFB2_03183	0.26	+1.3
3,341,653	+		EFB2_03183	0.26	-0.5
3,341,653	+		EFB2_03183	0.26	+0.9
3,341,653	+		EFB2_03183	0.26	+1.0
3,341,654	-		EFB2_03183	0.26	+2.1
3,341,654	-		EFB2_03183	0.26	-1.3
3,341,654	-		EFB2_03183	0.26	+0.8
3,341,654	-		EFB2_03183	0.26	-2.3
3,341,656	+		EFB2_03183	0.27	+0.4
3,341,657	-		EFB2_03183	0.27	+0.3
3,341,663	+		EFB2_03183	0.27	+1.4
3,341,663	+		EFB2_03183	0.27	-0.8
3,341,663	+		EFB2_03183	0.27	-0.3
3,341,663	+		EFB2_03183	0.27	-1.7
3,341,664	-		EFB2_03183	0.27	-2.0
3,341,664	-		EFB2_03183	0.27	+0.0
3,341,692	-		EFB2_03183	0.30	-0.0
3,341,744	+		EFB2_03183	0.35	+0.2
3,341,745	-		EFB2_03183	0.35	-1.7
3,341,745	-		EFB2_03183	0.35	-2.1
3,341,778	+		EFB2_03183	0.38	-0.5
3,341,778	+		EFB2_03183	0.38	+1.0
3,341,778	+		EFB2_03183	0.38	+1.1
3,341,778	+		EFB2_03183	0.38	+2.1
3,341,778	+		EFB2_03183	0.38	-0.9
3,341,778	+		EFB2_03183	0.38	-0.8
3,341,779	-		EFB2_03183	0.38	-1.7
3,341,779	-		EFB2_03183	0.38	-0.7
3,341,779	-		EFB2_03183	0.38	+0.7
3,341,779	-		EFB2_03183	0.38	+0.4
3,341,779	-		EFB2_03183	0.38	+1.4
3,341,779	-		EFB2_03183	0.38	-0.8
3,341,779	-		EFB2_03183	0.38	-2.6
3,341,779	-		EFB2_03183	0.38	-1.7
3,341,805	+		EFB2_03183	0.40	-0.5
3,341,822	+		EFB2_03183	0.42	+0.1
3,341,822	+		EFB2_03183	0.42	+1.5
3,341,822	+		EFB2_03183	0.42	-1.2
3,341,822	+		EFB2_03183	0.42	-1.3
3,341,822	+		EFB2_03183	0.42	+0.3
3,341,822	+		EFB2_03183	0.42	+0.4
3,341,822	+		EFB2_03183	0.42	+0.3
3,341,822	+		EFB2_03183	0.42	+0.5
3,341,822	+		EFB2_03183	0.42	+0.7
3,341,823	-		EFB2_03183	0.42	-2.6
3,341,823	-		EFB2_03183	0.42	-1.6
3,341,823	-		EFB2_03183	0.42	+0.3
3,341,823	-		EFB2_03183	0.42	-1.3
3,341,823	-		EFB2_03183	0.42	-1.3
3,341,823	-		EFB2_03183	0.42	-2.3
3,341,948	+		EFB2_03183	0.53	-0.5
3,341,948	+		EFB2_03183	0.53	-1.9
3,342,094	+		EFB2_03183	0.66	+1.4
3,342,094	+		EFB2_03183	0.66	+0.2
3,342,094	+		EFB2_03183	0.66	+0.2
3,342,094	+		EFB2_03183	0.66	+0.7
3,342,095	-		EFB2_03183	0.67	+0.3
3,342,095	-		EFB2_03183	0.67	+0.7
3,342,095	-		EFB2_03183	0.67	+1.0
3,342,095	-		EFB2_03183	0.67	+0.4
3,342,147	+		EFB2_03183	0.71	-0.4
3,342,148	-		EFB2_03183	0.71	+0.9
3,342,148	-		EFB2_03183	0.71	+0.8
3,342,206	+		EFB2_03183	0.77	+0.8
3,342,206	+		EFB2_03183	0.77	+1.1
3,342,207	-		EFB2_03183	0.77	-0.5
3,342,213	+		EFB2_03183	0.77	-1.1
3,342,231	+		EFB2_03183	0.79	-0.2
3,342,236	+		EFB2_03183	0.79	+0.6
3,342,236	+		EFB2_03183	0.79	-1.5
3,342,237	-		EFB2_03183	0.80	+1.5
3,342,299	+		EFB2_03183	0.85	-1.3
3,342,299	+		EFB2_03183	0.85	-2.3
3,342,300	-		EFB2_03183	0.85	-1.3
3,342,300	-		EFB2_03183	0.85	-0.6
3,342,342	+		EFB2_03183	0.89	-2.8
3,342,342	+		EFB2_03183	0.89	-1.9
3,342,343	-		EFB2_03183	0.89	+0.1
3,342,343	-		EFB2_03183	0.89	+0.1
3,342,343	-		EFB2_03183	0.89	-0.8
3,342,343	-		EFB2_03183	0.89	+0.2
3,342,343	-		EFB2_03183	0.89	-0.9
3,342,373	+				-0.1
3,342,373	+				-0.3
3,342,373	+				-2.1
3,342,374	-				-0.1
3,342,374	-				-2.1
3,342,374	-				-1.0
3,342,374	-				-1.1
3,342,374	-				-0.9
3,342,374	-				-0.2
3,342,410	+				-0.5
3,342,410	+				-0.1
3,342,410	+				+1.3
3,342,410	+				+0.2
3,342,410	+				+1.4
3,342,411	-				-0.2
3,342,411	-				+0.5
3,342,411	-				-1.2
3,342,411	-				-2.0
3,342,411	-				+0.7
3,342,411	-				-0.5
3,342,411	-				+0.7
3,342,411	-				+1.6
3,342,411	-				+0.8
3,342,429	+				-0.4
3,342,429	+				-1.5
3,342,430	-				-1.0
3,342,443	+				-0.1
3,342,444	-				-2.2
3,342,448	+				-2.4
3,342,448	+				+1.7
3,342,448	+				-0.7
3,342,449	-				-0.1
3,342,449	-				-0.7
3,342,449	-				+0.6
3,342,483	+				+4.7
3,342,483	+				+0.2
3,342,483	+				+0.2
3,342,484	-				+1.5
3,342,484	-				-0.5
3,342,492	+				+0.5
3,342,500	-				+0.4
3,342,500	-				-0.8
3,342,500	-				+0.7
3,342,517	+				-2.1
3,342,517	+				+0.5
3,342,518	-				+0.6
3,342,569	+				+0.1
3,342,569	+				-1.4
3,342,569	+				-2.5
3,342,569	+				+4.0
3,342,569	+				+1.6
3,342,569	+				-0.5
3,342,569	+				+0.4
3,342,570	-				-0.2
3,342,583	+				+0.9
3,342,584	-				-2.9
3,342,614	+				+0.9
3,342,614	+				+0.2
3,342,614	+				+1.1
3,342,614	+				+1.2
3,342,614	+				-0.3
3,342,614	+				-1.4
3,342,614	+				-0.1
3,342,614	+				+1.9
3,342,614	+				-0.3
3,342,614	+				-0.4
3,342,614	+				+0.2
3,342,614	+				-0.5
3,342,614	+				-2.4
3,342,614	+				-1.9
3,342,614	+				+0.7
3,342,614	+				+0.5
3,342,614	+				-2.3
3,342,614	+				+0.7
3,342,614	+				+0.5
3,342,614	+				-1.3
3,342,614	+				-1.0
3,342,614	+				+0.1
3,342,614	+				+0.2
3,342,614	+				+0.7
3,342,614	+				-0.6
3,342,614	+				-0.6
3,342,614	+				+1.9
3,342,614	+				-0.5
3,342,614	+				+0.6
3,342,614	+				-0.6
3,342,614	+				+2.9
3,342,615	-				+0.5
3,342,615	-				+0.7
3,342,615	-				+0.9
3,342,615	-				-0.2
3,342,615	-				-0.6
3,342,615	-				-0.5
3,342,615	-				-1.0
3,342,615	-				-0.6
3,342,615	-				-1.7
3,342,615	-				+1.3
3,342,615	-				+2.0
3,342,615	-				+0.3
3,342,615	-				-0.5
3,342,615	-				-3.4
3,342,615	-				-1.7
3,342,615	-				-0.2
3,342,615	-				-0.3
3,342,615	-				+2.8
3,342,615	-				-1.8
3,342,615	-				-0.5
3,342,616	+				-3.1
3,342,616	+				+0.5
3,342,616	+				-0.5
3,342,616	+				-1.1
3,342,616	+				-0.8
3,342,617	-				+1.6
3,342,617	-				+0.1
3,342,635	+				-2.0
3,342,635	+				-1.0
3,342,635	+				-1.0
3,342,635	+				-0.7
3,342,635	+				+1.1
3,342,635	+				+0.4
3,342,636	-				-0.5
3,342,636	-				-0.7
3,342,636	-				-0.6
3,342,646	+				+0.7
3,342,646	+				-2.4
3,342,646	+				+1.3
3,342,662	+				-1.7
3,342,663	-				-0.3
3,342,663	-				-0.8
3,342,663	-				-0.2
3,342,702	-		EFB2_03184	0.11	-1.7
3,342,785	+		EFB2_03184	0.19	+0.5
3,342,785	+		EFB2_03184	0.19	-1.3
3,342,785	+		EFB2_03184	0.19	+2.1
3,342,786	-		EFB2_03184	0.19	-1.0
3,342,786	-		EFB2_03184	0.19	-1.5
3,342,796	+		EFB2_03184	0.20	-2.1
3,342,833	+		EFB2_03184	0.24	-0.6
3,342,874	+		EFB2_03184	0.28	-2.1
3,342,874	+		EFB2_03184	0.28	+0.8
3,342,874	+		EFB2_03184	0.28	+0.1
3,342,874	+		EFB2_03184	0.28	-0.4
3,342,891	+		EFB2_03184	0.30	+0.1
3,342,892	-		EFB2_03184	0.30	+2.3
3,342,892	-		EFB2_03184	0.30	+1.5
3,342,892	-		EFB2_03184	0.30	+1.4
3,342,914	+		EFB2_03184	0.32	+0.3
3,342,914	+		EFB2_03184	0.32	+0.6
3,342,934	+		EFB2_03184	0.34	+0.9
3,342,934	+		EFB2_03184	0.34	-1.7
3,342,934	+		EFB2_03184	0.34	+0.1
3,342,934	+		EFB2_03184	0.34	-0.0
3,342,935	-		EFB2_03184	0.34	+0.3
3,342,935	-		EFB2_03184	0.34	+0.3
3,342,940	-		EFB2_03184	0.35	+0.1
3,342,940	-		EFB2_03184	0.35	-0.5
3,342,940	-		EFB2_03184	0.35	+2.0
3,342,945	+		EFB2_03184	0.35	+0.7
3,342,945	+		EFB2_03184	0.35	+1.7
3,342,946	-		EFB2_03184	0.35	+1.0
3,342,965	+		EFB2_03184	0.37	+1.1
3,342,965	+		EFB2_03184	0.37	-1.4
3,342,965	+		EFB2_03184	0.37	-0.3
3,342,965	+		EFB2_03184	0.37	-3.0
3,342,965	+		EFB2_03184	0.37	-0.6
3,342,965	+		EFB2_03184	0.37	+0.6
3,342,965	+		EFB2_03184	0.37	+0.8
3,342,965	+		EFB2_03184	0.37	+2.4
3,342,965	+		EFB2_03184	0.37	-0.7
3,342,965	+		EFB2_03184	0.37	+2.4
3,342,965	+		EFB2_03184	0.37	+0.4
3,342,966	-		EFB2_03184	0.37	-2.0
3,342,988	+		EFB2_03184	0.40	-2.8
3,342,988	+		EFB2_03184	0.40	+1.0
3,342,988	+		EFB2_03184	0.40	-0.1
3,342,988	+		EFB2_03184	0.40	+2.0
3,342,988	+		EFB2_03184	0.40	+0.5
3,342,988	+		EFB2_03184	0.40	-2.1
3,342,988	+		EFB2_03184	0.40	-2.7
3,342,988	+		EFB2_03184	0.40	+0.3
3,342,988	+		EFB2_03184	0.40	+1.1
3,342,988	+		EFB2_03184	0.40	-0.5
3,342,988	+		EFB2_03184	0.40	+0.4
3,342,988	+		EFB2_03184	0.40	+0.8
3,342,988	+		EFB2_03184	0.40	-0.7
3,342,988	+		EFB2_03184	0.40	-0.7
3,342,990	+		EFB2_03184	0.40	+0.7
3,342,990	+		EFB2_03184	0.40	+1.6
3,342,990	+		EFB2_03184	0.40	-0.7
3,342,990	+		EFB2_03184	0.40	-0.6
3,342,990	+		EFB2_03184	0.40	-1.7
3,342,990	+		EFB2_03184	0.40	+1.2
3,342,990	+		EFB2_03184	0.40	+0.6
3,342,990	+		EFB2_03184	0.40	-0.0
3,342,991	-		EFB2_03184	0.40	+1.3
3,342,991	-		EFB2_03184	0.40	+0.5
3,342,991	-		EFB2_03184	0.40	-2.5
3,342,991	-		EFB2_03184	0.40	-0.5
3,342,991	-		EFB2_03184	0.40	-1.5
3,342,991	-		EFB2_03184	0.40	-1.0
3,342,991	-		EFB2_03184	0.40	+0.7
3,343,082	+		EFB2_03184	0.49	-2.2
3,343,124	+		EFB2_03184	0.53	+0.1
3,343,124	+		EFB2_03184	0.53	+0.8
3,343,124	+		EFB2_03184	0.53	-0.0
3,343,124	+		EFB2_03184	0.53	-2.9
3,343,124	+		EFB2_03184	0.53	-1.7
3,343,124	+		EFB2_03184	0.53	-0.1
3,343,124	+		EFB2_03184	0.53	+0.5
3,343,124	+		EFB2_03184	0.53	+1.0
3,343,125	-		EFB2_03184	0.53	+0.9
3,343,125	-		EFB2_03184	0.53	-0.6
3,343,125	-		EFB2_03184	0.53	+0.3
3,343,148	+		EFB2_03184	0.56	+0.5
3,343,148	+		EFB2_03184	0.56	-1.1
3,343,148	+		EFB2_03184	0.56	-0.7
3,343,161	+		EFB2_03184	0.57	+0.5
3,343,161	+		EFB2_03184	0.57	+0.1
3,343,161	+		EFB2_03184	0.57	-0.2
3,343,161	+		EFB2_03184	0.57	+1.5
3,343,185	-		EFB2_03184	0.60	-1.6
3,343,261	+		EFB2_03184	0.67	-0.0
3,343,261	+		EFB2_03184	0.67	-0.8
3,343,262	-		EFB2_03184	0.67	-0.9
3,343,318	+		EFB2_03184	0.73	-0.9
3,343,318	+		EFB2_03184	0.73	+0.0
3,343,329	-		EFB2_03184	0.74	+0.3
3,343,352	+		EFB2_03184	0.76	+0.8
3,343,352	+		EFB2_03184	0.76	-1.1
3,343,352	+		EFB2_03184	0.76	+0.1
3,343,352	+		EFB2_03184	0.76	-0.5
3,343,352	+		EFB2_03184	0.76	-0.5
3,343,352	+		EFB2_03184	0.76	+1.3
3,343,352	+		EFB2_03184	0.76	-0.2
3,343,352	+		EFB2_03184	0.76	-0.3
3,343,352	+		EFB2_03184	0.76	-2.4
3,343,352	+		EFB2_03184	0.76	-2.0
3,343,352	+		EFB2_03184	0.76	-2.2
3,343,353	-		EFB2_03184	0.76	-0.4
3,343,353	-		EFB2_03184	0.76	-1.9
3,343,353	-		EFB2_03184	0.76	-1.0
3,343,356	+		EFB2_03184	0.77	+1.1
3,343,371	+		EFB2_03184	0.78	-2.9
3,343,404	+		EFB2_03184	0.82	-4.2
3,343,404	+		EFB2_03184	0.82	-2.7
3,343,405	-		EFB2_03184	0.82	-0.1
3,343,405	-		EFB2_03184	0.82	+0.1
3,343,435	+		EFB2_03184	0.85	-1.6
3,343,435	+		EFB2_03184	0.85	+0.2
3,343,435	+		EFB2_03184	0.85	-1.8
3,343,435	+		EFB2_03184	0.85	+1.1
3,343,435	+		EFB2_03184	0.85	-0.4
3,343,435	+		EFB2_03184	0.85	-1.7
3,343,435	+		EFB2_03184	0.85	-0.6
3,343,435	+		EFB2_03184	0.85	+0.3
3,343,436	-		EFB2_03184	0.85	+3.3
3,343,474	+		EFB2_03184	0.89	-0.9
3,343,474	+		EFB2_03184	0.89	+1.8
3,343,474	+		EFB2_03184	0.89	+0.1
3,343,474	+		EFB2_03184	0.89	-1.5
3,343,474	+		EFB2_03184	0.89	-0.7
3,343,474	+		EFB2_03184	0.89	-0.6
3,343,474	+		EFB2_03184	0.89	+1.0
3,343,474	+		EFB2_03184	0.89	+0.8
3,343,474	+		EFB2_03184	0.89	-0.0
3,343,474	+		EFB2_03184	0.89	+0.3
3,343,474	+		EFB2_03184	0.89	-1.5
3,343,474	+		EFB2_03184	0.89	+0.0
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