Strain Fitness in Escherichia fergusonii Becca around EFB2_03183

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,340,370	+		EFB2_03182	0.49	+2.1
3,340,370	+		EFB2_03182	0.49	+2.9
3,340,370	+		EFB2_03182	0.49	+1.8
3,340,370	+		EFB2_03182	0.49	+2.8
3,340,370	+		EFB2_03182	0.49	+0.7
3,340,370	+		EFB2_03182	0.49	+1.8
3,340,370	+		EFB2_03182	0.49	-0.1
3,340,371	-		EFB2_03182	0.49	-2.1
3,340,371	-		EFB2_03182	0.49	+0.5
3,340,371	-		EFB2_03182	0.49	+0.5
3,340,371	-		EFB2_03182	0.49	-1.2
3,340,371	-		EFB2_03182	0.49	-0.6
3,340,371	-		EFB2_03182	0.49	+0.1
3,340,388	+		EFB2_03182	0.50	+0.5
3,340,389	-		EFB2_03182	0.50	-0.4
3,340,425	-		EFB2_03182	0.52	-1.5
3,340,434	+		EFB2_03182	0.52	+1.1
3,340,434	+		EFB2_03182	0.52	-0.1
3,340,434	+		EFB2_03182	0.52	-1.5
3,340,434	+		EFB2_03182	0.52	-1.1
3,340,434	+		EFB2_03182	0.52	+1.1
3,340,434	+		EFB2_03182	0.52	-1.3
3,340,434	+		EFB2_03182	0.52	+0.2
3,340,434	+		EFB2_03182	0.52	-0.2
3,340,434	+		EFB2_03182	0.52	+0.8
3,340,434	+		EFB2_03182	0.52	+2.0
3,340,434	+		EFB2_03182	0.52	+2.9
3,340,435	-		EFB2_03182	0.52	-2.8
3,340,435	-		EFB2_03182	0.52	+0.3
3,340,435	-		EFB2_03182	0.52	+0.7
3,340,435	-		EFB2_03182	0.52	+1.4
3,340,435	-		EFB2_03182	0.52	+0.4
3,340,435	-		EFB2_03182	0.52	+0.5
3,340,435	-		EFB2_03182	0.52	+1.0
3,340,435	-		EFB2_03182	0.52	-0.5
3,340,435	-		EFB2_03182	0.52	+1.3
3,340,435	-		EFB2_03182	0.52	-1.0
3,340,435	-		EFB2_03182	0.52	-1.2
3,340,437	+		EFB2_03182	0.52	+0.8
3,340,437	+		EFB2_03182	0.52	-2.6
3,340,437	+		EFB2_03182	0.52	+1.3
3,340,437	+		EFB2_03182	0.52	-0.5
3,340,437	+		EFB2_03182	0.52	+0.5
3,340,437	+		EFB2_03182	0.52	+1.5
3,340,437	+		EFB2_03182	0.52	+0.3
3,340,437	+		EFB2_03182	0.52	-1.3
3,340,437	+		EFB2_03182	0.52	+3.0
3,340,438	-		EFB2_03182	0.52	+0.8
3,340,438	-		EFB2_03182	0.52	-2.3
3,340,438	-		EFB2_03182	0.52	+0.5
3,340,438	-		EFB2_03182	0.52	+1.1
3,340,438	-		EFB2_03182	0.52	-0.7
3,340,438	-		EFB2_03182	0.52	-1.1
3,340,438	-		EFB2_03182	0.52	+0.5
3,340,438	-		EFB2_03182	0.52	-0.2
3,340,438	-		EFB2_03182	0.52	+0.2
3,340,438	-		EFB2_03182	0.52	+1.6
3,340,443	+		EFB2_03182	0.52	+0.4
3,340,443	+		EFB2_03182	0.52	+1.7
3,340,444	-		EFB2_03182	0.53	+0.2
3,340,449	+		EFB2_03182	0.53	-1.2
3,340,449	+		EFB2_03182	0.53	+0.4
3,340,449	+		EFB2_03182	0.53	-1.7
3,340,449	+		EFB2_03182	0.53	-0.5
3,340,450	-		EFB2_03182	0.53	+0.4
3,340,450	-		EFB2_03182	0.53	-0.3
3,340,450	-		EFB2_03182	0.53	+1.1
3,340,450	-		EFB2_03182	0.53	-2.0
3,340,468	+		EFB2_03182	0.54	-1.1
3,340,468	+		EFB2_03182	0.54	+2.1
3,340,522	-		EFB2_03182	0.57	+1.3
3,340,528	+		EFB2_03182	0.57	+0.9
3,340,528	+		EFB2_03182	0.57	-2.0
3,340,529	-		EFB2_03182	0.57	+0.3
3,340,529	-		EFB2_03182	0.57	-0.2
3,340,529	-		EFB2_03182	0.57	-2.0
3,340,530	+		EFB2_03182	0.57	+1.1
3,340,530	+		EFB2_03182	0.57	+0.6
3,340,530	+		EFB2_03182	0.57	-1.7
3,340,531	-		EFB2_03182	0.57	-2.4
3,340,531	-		EFB2_03182	0.57	+0.5
3,340,531	-		EFB2_03182	0.57	+0.8
3,340,531	-		EFB2_03182	0.57	+2.4
3,340,531	-		EFB2_03182	0.57	-0.1
3,340,549	+		EFB2_03182	0.58	-0.5
3,340,549	+		EFB2_03182	0.58	+1.4
3,340,550	-		EFB2_03182	0.58	-3.5
3,340,550	-		EFB2_03182	0.58	-0.8
3,340,550	-		EFB2_03182	0.58	+0.6
3,340,554	+		EFB2_03182	0.58	+0.4
3,340,554	+		EFB2_03182	0.58	-0.5
3,340,554	+		EFB2_03182	0.58	+1.4
3,340,554	+		EFB2_03182	0.58	+0.4
3,340,555	-		EFB2_03182	0.58	-0.5
3,340,555	-		EFB2_03182	0.58	-1.7
3,340,555	-		EFB2_03182	0.58	+0.9
3,340,555	-		EFB2_03182	0.58	-0.6
3,340,668	+		EFB2_03182	0.64	-3.6
3,340,669	-		EFB2_03182	0.64	-1.4
3,340,782	+		EFB2_03182	0.70	-0.1
3,340,783	-		EFB2_03182	0.70	-0.1
3,340,783	-		EFB2_03182	0.70	+0.2
3,340,873	+		EFB2_03182	0.75	-1.1
3,340,873	+		EFB2_03182	0.75	+0.5
3,340,874	-		EFB2_03182	0.75	-1.0
3,340,874	-		EFB2_03182	0.75	+0.0
3,340,874	-		EFB2_03182	0.75	-0.2
3,340,947	-		EFB2_03182	0.78	-0.3
3,340,949	+		EFB2_03182	0.78	-0.2
3,340,949	+		EFB2_03182	0.78	+0.5
3,340,949	+		EFB2_03182	0.78	+0.1
3,340,949	+		EFB2_03182	0.78	+1.1
3,340,949	+		EFB2_03182	0.78	+0.1
3,340,949	+		EFB2_03182	0.78	+0.9
3,340,950	-		EFB2_03182	0.79	+1.1
3,340,950	-		EFB2_03182	0.79	+0.4
3,340,950	-		EFB2_03182	0.79	-2.8
3,340,950	-		EFB2_03182	0.79	-1.1
3,340,956	+		EFB2_03182	0.79	+0.2
3,340,956	+		EFB2_03182	0.79	+1.4
3,340,957	-		EFB2_03182	0.79	+0.1
3,340,957	-		EFB2_03182	0.79	+1.4
3,340,957	-		EFB2_03182	0.79	+0.2
3,340,984	+		EFB2_03182	0.80	-1.8
3,340,984	+		EFB2_03182	0.80	+0.1
3,340,984	+		EFB2_03182	0.80	+0.8
3,340,985	-		EFB2_03182	0.80	+0.2
3,341,030	+		EFB2_03182	0.83	+1.3
3,341,030	+		EFB2_03182	0.83	-1.5
3,341,030	+		EFB2_03182	0.83	-3.6
3,341,031	-		EFB2_03182	0.83	+0.1
3,341,031	-		EFB2_03182	0.83	-0.8
3,341,031	-		EFB2_03182	0.83	+1.0
3,341,041	+		EFB2_03182	0.83	-2.6
3,341,041	+		EFB2_03182	0.83	-0.6
3,341,041	+		EFB2_03182	0.83	+1.8
3,341,042	-		EFB2_03182	0.83	+1.4
3,341,042	-		EFB2_03182	0.83	+0.1
3,341,065	+		EFB2_03182	0.84	-2.9
3,341,066	-		EFB2_03182	0.84	+0.4
3,341,084	+		EFB2_03182	0.85	-0.8
3,341,097	+		EFB2_03182	0.86	-0.6
3,341,098	-		EFB2_03182	0.86	+0.9
3,341,098	-		EFB2_03182	0.86	-0.1
3,341,174	+				+1.6
3,341,174	+				-2.2
3,341,174	+				+0.2
3,341,175	-				-1.1
3,341,175	-				+1.0
3,341,175	-				-1.1
3,341,211	+				+1.8
3,341,212	-				-0.5
3,341,229	+				+1.3
3,341,273	+				-0.5
3,341,273	+				-0.1
3,341,273	+				+0.9
3,341,273	+				+0.1
3,341,273	+				+1.1
3,341,273	+				-0.5
3,341,273	+				+0.2
3,341,274	-				+1.8
3,341,274	-				+0.4
3,341,274	-				-0.6
3,341,274	-				+0.8
3,341,274	-				+0.1
3,341,274	-				-1.5
3,341,274	-				-0.9
3,341,274	-				+2.2
3,341,274	-				+0.1
3,341,277	+				+0.5
3,341,277	+				-4.0
3,341,277	+				-0.8
3,341,278	-				-0.1
3,341,278	-				+2.5
3,341,278	-				-0.1
3,341,278	-				-0.3
3,341,278	-				+1.0
3,341,278	-				+1.0
3,341,278	-				+0.8
3,341,327	+				-0.1
3,341,327	+				-2.0
3,341,327	+				-0.5
3,341,327	+				+0.9
3,341,327	+				-0.9
3,341,327	+				-0.1
3,341,328	-				+0.5
3,341,328	-				-0.0
3,341,341	-				-0.7
3,341,348	-				-3.3
3,341,348	-				-1.7
3,341,348	-				+1.6
3,341,450	+				+0.5
3,341,450	+				+0.2
3,341,450	+				-2.3
3,341,450	+				-2.6
3,341,451	-				+0.2
3,341,451	-				+2.9
3,341,510	+		EFB2_03183	0.13	-0.2
3,341,510	+		EFB2_03183	0.13	+1.1
3,341,511	-		EFB2_03183	0.13	+0.3
3,341,511	-		EFB2_03183	0.13	+0.5
3,341,511	-		EFB2_03183	0.13	+0.2
3,341,511	-		EFB2_03183	0.13	-0.1
3,341,512	+		EFB2_03183	0.13	-2.2
3,341,512	+		EFB2_03183	0.13	-2.6
3,341,512	+		EFB2_03183	0.13	-3.0
3,341,513	-		EFB2_03183	0.14	+0.8
3,341,588	+		EFB2_03183	0.20	+1.5
3,341,588	+		EFB2_03183	0.20	+1.1
3,341,588	+		EFB2_03183	0.20	+0.5
3,341,588	+		EFB2_03183	0.20	-1.7
3,341,588	+		EFB2_03183	0.20	-0.3
3,341,589	-		EFB2_03183	0.20	-0.5
3,341,589	-		EFB2_03183	0.20	+0.0
3,341,589	-		EFB2_03183	0.20	+0.6
3,341,607	-		EFB2_03183	0.22	-2.7
3,341,637	+		EFB2_03183	0.25	-1.5
3,341,637	+		EFB2_03183	0.25	-2.1
3,341,637	+		EFB2_03183	0.25	-0.4
3,341,637	+		EFB2_03183	0.25	+2.7
3,341,638	-		EFB2_03183	0.25	+0.2
3,341,638	-		EFB2_03183	0.25	+1.6
3,341,638	-		EFB2_03183	0.25	+3.5
3,341,653	+		EFB2_03183	0.26	+0.5
3,341,653	+		EFB2_03183	0.26	+1.3
3,341,653	+		EFB2_03183	0.26	-0.5
3,341,653	+		EFB2_03183	0.26	+0.9
3,341,653	+		EFB2_03183	0.26	+1.0
3,341,654	-		EFB2_03183	0.26	+2.1
3,341,654	-		EFB2_03183	0.26	-1.3
3,341,654	-		EFB2_03183	0.26	+0.8
3,341,654	-		EFB2_03183	0.26	-2.3
3,341,656	+		EFB2_03183	0.27	+0.4
3,341,657	-		EFB2_03183	0.27	+0.3
3,341,663	+		EFB2_03183	0.27	+1.4
3,341,663	+		EFB2_03183	0.27	-0.8
3,341,663	+		EFB2_03183	0.27	-0.3
3,341,663	+		EFB2_03183	0.27	-1.7
3,341,664	-		EFB2_03183	0.27	-2.0
3,341,664	-		EFB2_03183	0.27	+0.0
3,341,692	-		EFB2_03183	0.30	-0.0
3,341,744	+		EFB2_03183	0.35	+0.2
3,341,745	-		EFB2_03183	0.35	-1.7
3,341,745	-		EFB2_03183	0.35	-2.1
3,341,778	+		EFB2_03183	0.38	-0.5
3,341,778	+		EFB2_03183	0.38	+1.0
3,341,778	+		EFB2_03183	0.38	+1.1
3,341,778	+		EFB2_03183	0.38	+2.1
3,341,778	+		EFB2_03183	0.38	-0.9
3,341,778	+		EFB2_03183	0.38	-0.8
3,341,779	-		EFB2_03183	0.38	-1.7
3,341,779	-		EFB2_03183	0.38	-0.7
3,341,779	-		EFB2_03183	0.38	+0.7
3,341,779	-		EFB2_03183	0.38	+0.4
3,341,779	-		EFB2_03183	0.38	+1.4
3,341,779	-		EFB2_03183	0.38	-0.8
3,341,779	-		EFB2_03183	0.38	-2.6
3,341,779	-		EFB2_03183	0.38	-1.7
3,341,805	+		EFB2_03183	0.40	-0.5
3,341,822	+		EFB2_03183	0.42	+0.1
3,341,822	+		EFB2_03183	0.42	+1.5
3,341,822	+		EFB2_03183	0.42	-1.2
3,341,822	+		EFB2_03183	0.42	-1.3
3,341,822	+		EFB2_03183	0.42	+0.3
3,341,822	+		EFB2_03183	0.42	+0.4
3,341,822	+		EFB2_03183	0.42	+0.3
3,341,822	+		EFB2_03183	0.42	+0.5
3,341,822	+		EFB2_03183	0.42	+0.7
3,341,823	-		EFB2_03183	0.42	-2.6
3,341,823	-		EFB2_03183	0.42	-1.6
3,341,823	-		EFB2_03183	0.42	+0.3
3,341,823	-		EFB2_03183	0.42	-1.3
3,341,823	-		EFB2_03183	0.42	-1.3
3,341,823	-		EFB2_03183	0.42	-2.3
3,341,948	+		EFB2_03183	0.53	-0.5
3,341,948	+		EFB2_03183	0.53	-1.9
3,342,094	+		EFB2_03183	0.66	+1.4
3,342,094	+		EFB2_03183	0.66	+0.2
3,342,094	+		EFB2_03183	0.66	+0.2
3,342,094	+		EFB2_03183	0.66	+0.7
3,342,095	-		EFB2_03183	0.67	+0.3
3,342,095	-		EFB2_03183	0.67	+0.7
3,342,095	-		EFB2_03183	0.67	+1.0
3,342,095	-		EFB2_03183	0.67	+0.4
3,342,147	+		EFB2_03183	0.71	-0.4
3,342,148	-		EFB2_03183	0.71	+0.9
3,342,148	-		EFB2_03183	0.71	+0.8
3,342,206	+		EFB2_03183	0.77	+0.8
3,342,206	+		EFB2_03183	0.77	+1.1
3,342,207	-		EFB2_03183	0.77	-0.5
3,342,213	+		EFB2_03183	0.77	-1.1
3,342,231	+		EFB2_03183	0.79	-0.2
3,342,236	+		EFB2_03183	0.79	+0.6
3,342,236	+		EFB2_03183	0.79	-1.5
3,342,237	-		EFB2_03183	0.80	+1.5
3,342,299	+		EFB2_03183	0.85	-1.3
3,342,299	+		EFB2_03183	0.85	-2.3
3,342,300	-		EFB2_03183	0.85	-1.3
3,342,300	-		EFB2_03183	0.85	-0.6
3,342,342	+		EFB2_03183	0.89	-2.8
3,342,342	+		EFB2_03183	0.89	-1.9
3,342,343	-		EFB2_03183	0.89	+0.1
3,342,343	-		EFB2_03183	0.89	+0.1
3,342,343	-		EFB2_03183	0.89	-0.8
3,342,343	-		EFB2_03183	0.89	+0.2
3,342,343	-		EFB2_03183	0.89	-0.9
3,342,373	+				-0.1
3,342,373	+				-0.3
3,342,373	+				-2.1
3,342,374	-				-0.1
3,342,374	-				-2.1
3,342,374	-				-1.0
3,342,374	-				-1.1
3,342,374	-				-0.9
3,342,374	-				-0.2
3,342,410	+				-0.5
3,342,410	+				-0.1
3,342,410	+				+1.3
3,342,410	+				+0.2
3,342,410	+				+1.4
3,342,411	-				-0.2
3,342,411	-				+0.5
3,342,411	-				-1.2
3,342,411	-				-2.0
3,342,411	-				+0.7
3,342,411	-				-0.5
3,342,411	-				+0.7
3,342,411	-				+1.6
3,342,411	-				+0.8
3,342,429	+				-0.4
3,342,429	+				-1.5
3,342,430	-				-1.0
3,342,443	+				-0.1
3,342,444	-				-2.2
3,342,448	+				-2.4
3,342,448	+				+1.7
3,342,448	+				-0.7
3,342,449	-				-0.1
3,342,449	-				-0.7
3,342,449	-				+0.6
3,342,483	+				+4.7
3,342,483	+				+0.2
3,342,483	+				+0.2
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