Strain Fitness in Escherichia fergusonii Becca around EFB2_02867

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,004,424	-		EFB2_02866	0.54	-1.7
3,004,424	-		EFB2_02866	0.54	-0.0
3,004,429	+		EFB2_02866	0.54	-2.4
3,004,429	+		EFB2_02866	0.54	-0.6
3,004,429	+		EFB2_02866	0.54	+1.2
3,004,429	+		EFB2_02866	0.54	+0.4
3,004,430	-		EFB2_02866	0.54	-1.2
3,004,430	-		EFB2_02866	0.54	-0.5
3,004,430	-		EFB2_02866	0.54	-0.5
3,004,476	+		EFB2_02866	0.58	-0.4
3,004,476	+		EFB2_02866	0.58	-0.9
3,004,477	-		EFB2_02866	0.58	+2.2
3,004,477	-		EFB2_02866	0.58	+1.9
3,004,477	-		EFB2_02866	0.58	+1.2
3,004,513	-		EFB2_02866	0.61	-0.7
3,004,513	-		EFB2_02866	0.61	+1.6
3,004,513	-		EFB2_02866	0.61	+0.2
3,004,513	-		EFB2_02866	0.61	+0.4
3,004,513	-		EFB2_02866	0.61	+0.7
3,004,513	-		EFB2_02866	0.61	+0.2
3,004,513	-		EFB2_02866	0.61	+0.0
3,004,544	-		EFB2_02866	0.63	-0.1
3,004,634	+		EFB2_02866	0.70	-2.2
3,004,682	-		EFB2_02866	0.74	+1.4
3,004,691	+		EFB2_02866	0.74	-0.4
3,004,740	-		EFB2_02866	0.78	-2.3
3,004,740	-		EFB2_02866	0.78	+1.0
3,004,740	-		EFB2_02866	0.78	-1.5
3,004,740	-		EFB2_02866	0.78	+1.2
3,004,740	-		EFB2_02866	0.78	+1.8
3,004,766	+		EFB2_02866	0.80	+1.9
3,004,767	-		EFB2_02866	0.80	+0.6
3,004,773	+		EFB2_02866	0.81	+0.2
3,004,773	+		EFB2_02866	0.81	+1.2
3,004,773	+		EFB2_02866	0.81	+0.6
3,004,774	-		EFB2_02866	0.81	-0.7
3,004,822	+		EFB2_02866	0.84	-1.5
3,004,822	+		EFB2_02866	0.84	+0.7
3,004,822	+		EFB2_02866	0.84	-2.0
3,004,822	+		EFB2_02866	0.84	-1.9
3,004,823	-		EFB2_02866	0.85	-2.6
3,004,823	-		EFB2_02866	0.85	-0.1
3,004,823	-		EFB2_02866	0.85	+0.2
3,004,823	-		EFB2_02866	0.85	+1.7
3,004,823	-		EFB2_02866	0.85	-1.0
3,004,823	-		EFB2_02866	0.85	+0.1
3,004,916	+				-0.8
3,004,916	+				+0.2
3,004,917	-				+0.2
3,004,917	-				+2.4
3,004,946	+				+1.0
3,004,946	+				-2.4
3,004,947	-				-1.4
3,004,947	-				+2.2
3,004,947	-				-2.4
3,005,018	+				+1.6
3,005,018	+				+1.2
3,005,018	+				+0.5
3,005,042	+				-2.3
3,005,060	+				+0.5
3,005,070	+				-1.3
3,005,082	+				+1.4
3,005,168	+				-0.5
3,005,169	-				+2.0
3,005,266	-				+1.4
3,005,267	+				-1.8
3,005,267	+				-1.4
3,005,267	+				-0.6
3,005,267	+				-1.2
3,005,267	+				-0.4
3,005,267	+				-3.8
3,005,268	-				+1.8
3,005,268	-				+0.2
3,005,281	+				-2.1
3,005,281	+				-2.7
3,005,281	+				-2.3
3,005,281	+				+1.0
3,005,281	+				+0.2
3,005,281	+				-2.0
3,005,281	+				-0.1
3,005,306	+				+0.2
3,005,306	+				-1.6
3,005,306	+				+1.4
3,005,306	+				+0.3
3,005,306	+				+1.1
3,005,307	-				+0.8
3,005,403	-				+2.3
3,005,403	-				+0.2
3,005,403	-				+0.1
3,005,424	+				+1.0
3,005,446	+				+0.8
3,005,457	-				+0.7
3,005,470	+				+0.2
3,005,470	+				+0.7
3,005,471	-				+0.3
3,005,471	-				+1.6
3,005,471	-				+0.6
3,005,514	+		EFB2_02867	0.17	-1.6
3,005,515	-		EFB2_02867	0.17	+0.2
3,005,517	+		EFB2_02867	0.17	-0.8
3,005,517	+		EFB2_02867	0.17	-1.8
3,005,551	+		EFB2_02867	0.24	-1.7
3,005,551	+		EFB2_02867	0.24	-3.1
3,005,567	-		EFB2_02867	0.27	-1.8
3,005,567	-		EFB2_02867	0.27	+1.3
3,005,626	+		EFB2_02867	0.37	+0.9
3,005,626	+		EFB2_02867	0.37	-2.6
3,005,626	+		EFB2_02867	0.37	+0.5
3,005,626	+		EFB2_02867	0.37	+0.2
3,005,627	-		EFB2_02867	0.38	+0.6
3,005,627	-		EFB2_02867	0.38	-0.1
3,005,627	-		EFB2_02867	0.38	-0.1
3,005,627	-		EFB2_02867	0.38	+0.2
3,005,627	-		EFB2_02867	0.38	+1.8
3,005,643	+		EFB2_02867	0.41	-1.0
3,005,643	+		EFB2_02867	0.41	-2.0
3,005,643	+		EFB2_02867	0.41	-1.4
3,005,643	+		EFB2_02867	0.41	-0.5
3,005,644	-		EFB2_02867	0.41	-2.7
3,005,644	-		EFB2_02867	0.41	+2.1
3,005,683	-		EFB2_02867	0.48	+1.1
3,005,839	+		EFB2_02867	0.77	+0.2
3,005,839	+		EFB2_02867	0.77	-1.8
3,005,839	+		EFB2_02867	0.77	+0.4
3,005,839	+		EFB2_02867	0.77	-1.8
3,005,839	+		EFB2_02867	0.77	+1.0
3,005,839	+		EFB2_02867	0.77	-1.3
3,005,840	-		EFB2_02867	0.77	-0.7
3,005,840	-		EFB2_02867	0.77	-0.2
3,005,840	-		EFB2_02867	0.77	-0.2
3,005,840	-		EFB2_02867	0.77	+1.3
3,005,840	-		EFB2_02867	0.77	+0.2
3,005,840	-		EFB2_02867	0.77	-2.7
3,005,840	-		EFB2_02867	0.77	+0.1
3,005,840	-		EFB2_02867	0.77	-2.5
3,005,840	-		EFB2_02867	0.77	-0.6
3,005,840	-		EFB2_02867	0.77	-1.1
3,005,840	-		EFB2_02867	0.77	+1.3
3,005,840	-		EFB2_02867	0.77	-1.0
3,005,840	-		EFB2_02867	0.77	-0.8
3,005,840	-		EFB2_02867	0.77	+0.7
3,005,840	-		EFB2_02867	0.77	+1.3
3,005,860	+		EFB2_02867	0.80	+0.4
3,005,861	-		EFB2_02867	0.81	-0.7
3,005,861	-		EFB2_02867	0.81	-1.3
3,005,861	-		EFB2_02867	0.81	-2.1
3,005,861	-		EFB2_02867	0.81	+1.1
3,005,861	-		EFB2_02867	0.81	+2.5
3,005,861	-		EFB2_02867	0.81	+0.6
3,005,861	-		EFB2_02867	0.81	-1.5
3,005,865	+		EFB2_02867	0.81	-1.2
3,005,865	+		EFB2_02867	0.81	-0.0
3,005,865	+		EFB2_02867	0.81	+0.2
3,005,865	+		EFB2_02867	0.81	+1.6
3,005,865	+		EFB2_02867	0.81	+0.8
3,005,866	-		EFB2_02867	0.82	-0.1
3,005,866	-		EFB2_02867	0.82	-1.3
3,005,866	-		EFB2_02867	0.82	-1.5
3,005,866	-		EFB2_02867	0.82	-0.0
3,005,866	-		EFB2_02867	0.82	+1.6
3,005,870	+		EFB2_02867	0.82	-1.0
3,005,870	+		EFB2_02867	0.82	+0.4
3,005,870	+		EFB2_02867	0.82	+0.0
3,005,870	+		EFB2_02867	0.82	-0.3
3,005,870	+		EFB2_02867	0.82	+0.8
3,005,870	+		EFB2_02867	0.82	-3.0
3,005,870	+		EFB2_02867	0.82	+0.4
3,005,870	+		EFB2_02867	0.82	+0.3
3,005,870	+		EFB2_02867	0.82	+0.1
3,005,870	+		EFB2_02867	0.82	+0.2
3,005,870	+		EFB2_02867	0.82	-0.2
3,005,870	+		EFB2_02867	0.82	-0.8
3,005,870	+		EFB2_02867	0.82	+1.1
3,005,870	+		EFB2_02867	0.82	-1.4
3,005,870	+		EFB2_02867	0.82	+2.6
3,005,871	-		EFB2_02867	0.83	-0.8
3,005,871	-		EFB2_02867	0.83	-2.6
3,005,871	-		EFB2_02867	0.83	+0.5
3,005,871	-		EFB2_02867	0.83	-2.1
3,005,871	-		EFB2_02867	0.83	+1.1
3,005,871	-		EFB2_02867	0.83	-0.8
3,005,871	-		EFB2_02867	0.83	+0.0
3,005,871	-		EFB2_02867	0.83	-0.4
3,005,871	-		EFB2_02867	0.83	+0.0
3,005,871	-		EFB2_02867	0.83	-1.9
3,005,873	+		EFB2_02867	0.83	-2.3
3,005,873	+		EFB2_02867	0.83	+1.7
3,005,874	-		EFB2_02867	0.83	-1.7
3,005,874	-		EFB2_02867	0.83	-2.0
3,005,879	+		EFB2_02867	0.84	+1.1
3,005,879	+		EFB2_02867	0.84	-1.8
3,005,879	+		EFB2_02867	0.84	-2.5
3,005,879	+		EFB2_02867	0.84	-2.0
3,005,880	-		EFB2_02867	0.84	+0.0
3,005,880	-		EFB2_02867	0.84	-0.0
3,005,880	-		EFB2_02867	0.84	-0.6
3,005,880	-		EFB2_02867	0.84	+1.2
3,005,880	-		EFB2_02867	0.84	-0.8
3,005,880	-		EFB2_02867	0.84	+0.8
3,005,880	-		EFB2_02867	0.84	-3.1
3,005,880	-		EFB2_02867	0.84	-2.3
3,005,880	-		EFB2_02867	0.84	-0.2
3,005,880	-		EFB2_02867	0.84	-0.0
3,005,880	-		EFB2_02867	0.84	+0.8
3,005,893	+		EFB2_02867	0.87	-2.6
3,005,893	+		EFB2_02867	0.87	-2.2
3,005,906	+		EFB2_02867	0.89	+2.1
3,005,906	+		EFB2_02867	0.89	+2.2
3,005,906	+		EFB2_02867	0.89	-1.1
3,005,907	-		EFB2_02867	0.89	+2.0
3,005,907	-		EFB2_02867	0.89	+0.3
3,005,907	-		EFB2_02867	0.89	-1.8
3,005,935	+				+1.3
3,005,935	+				-0.4
3,005,935	+				+2.5
3,005,936	-				-0.6
3,005,936	-				-2.0
3,005,936	-				-1.3
3,005,936	-				+0.2
3,005,936	-				-0.3
3,005,955	+				-1.2
3,005,955	+				-2.5
3,005,955	+				+0.5
3,005,956	-				+1.2
3,005,956	-				-0.4
3,005,956	-				-3.5
3,005,956	-				+2.3
3,005,956	-				-1.4
3,005,956	-				+1.1
3,005,959	+				+1.8
3,005,959	+				-0.6
3,005,959	+				+2.2
3,005,959	+				+0.6
3,005,959	+				+0.8
3,005,960	-				+1.5
3,005,960	-				-2.5
3,005,960	-				+0.7
3,005,960	-				+0.7
3,005,978	+				-1.4
3,005,978	+				-1.6
3,005,978	+				-0.8
3,005,978	+				-1.3
3,005,978	+				-1.5
3,005,978	+				+0.5
3,005,978	+				+1.7
3,005,978	+				-2.1
3,005,978	+				+0.4
3,005,978	+				+1.4
3,005,979	-				+0.7
3,005,979	-				+0.4
3,005,979	-				+0.3
3,005,979	-				-0.6
3,005,979	-				+0.2
3,005,979	-				-1.3
3,005,979	-				+0.3
3,005,979	-				-1.5
3,005,979	-				-0.4
3,005,979	-				-0.4
3,005,979	-				-2.7
3,005,979	-				-0.9
3,005,979	-				-0.1
3,005,979	-				-3.4
3,005,989	+				-0.0
3,006,024	+				+1.7
3,006,024	+				+0.6
3,006,024	+				-1.0
3,006,024	+				-0.6
3,006,025	-				-0.4
3,006,025	-				-2.5
3,006,025	-				-2.3
3,006,025	-				-2.6
3,006,025	-				+0.4
3,006,025	-				-0.8
3,006,025	-				+0.2
3,006,098	+		EFB2_02868	0.11	+1.7
3,006,099	-		EFB2_02868	0.11	-0.2
3,006,099	-		EFB2_02868	0.11	+1.0
3,006,113	+		EFB2_02868	0.12	+1.2
3,006,143	+		EFB2_02868	0.15	-1.8
3,006,143	+		EFB2_02868	0.15	-2.1
3,006,144	-		EFB2_02868	0.15	-0.8
3,006,144	-		EFB2_02868	0.15	-1.1
3,006,144	-		EFB2_02868	0.15	-0.6
3,006,147	+		EFB2_02868	0.15	+2.7
3,006,148	-		EFB2_02868	0.16	+0.2
3,006,168	-		EFB2_02868	0.18	+0.2
3,006,173	+		EFB2_02868	0.18	+1.6
3,006,173	+		EFB2_02868	0.18	+0.7
3,006,191	+		EFB2_02868	0.20	-1.0
3,006,191	+		EFB2_02868	0.20	+1.2
3,006,192	-		EFB2_02868	0.20	+1.0
3,006,192	-		EFB2_02868	0.20	-0.1
3,006,232	+		EFB2_02868	0.24	-0.5
3,006,232	+		EFB2_02868	0.24	-0.2
3,006,232	+		EFB2_02868	0.24	-0.7
3,006,233	-		EFB2_02868	0.24	+0.3
3,006,233	-		EFB2_02868	0.24	-2.5
3,006,233	-		EFB2_02868	0.24	+1.2
3,006,243	-		EFB2_02868	0.25	+0.7
3,006,265	-		EFB2_02868	0.27	-0.3
3,006,265	-		EFB2_02868	0.27	+0.3
3,006,329	-		EFB2_02868	0.33	+1.2
3,006,367	+		EFB2_02868	0.37	+0.6
3,006,367	+		EFB2_02868	0.37	+0.6
3,006,367	+		EFB2_02868	0.37	+2.2
3,006,367	+		EFB2_02868	0.37	+0.1
3,006,367	+		EFB2_02868	0.37	+1.1
3,006,367	+		EFB2_02868	0.37	-1.8
3,006,367	+		EFB2_02868	0.37	-0.6
3,006,368	-		EFB2_02868	0.37	+0.4
3,006,368	-		EFB2_02868	0.37	+2.3
3,006,368	-		EFB2_02868	0.37	+1.4
3,006,368	-		EFB2_02868	0.37	-0.1
3,006,368	-		EFB2_02868	0.37	-2.3
3,006,368	-		EFB2_02868	0.37	+0.3
3,006,368	-		EFB2_02868	0.37	+0.7
3,006,368	-		EFB2_02868	0.37	-0.1
3,006,368	-		EFB2_02868	0.37	+0.2
3,006,368	-		EFB2_02868	0.37	-0.0
3,006,386	+		EFB2_02868	0.39	+1.0
3,006,386	+		EFB2_02868	0.39	+0.6
3,006,387	-		EFB2_02868	0.39	+0.9
3,006,401	+		EFB2_02868	0.40	+3.1
3,006,415	-		EFB2_02868	0.42	+0.2
3,006,415	-		EFB2_02868	0.42	+1.3
3,006,434	+		EFB2_02868	0.43	-0.1
3,006,434	+		EFB2_02868	0.43	+0.6
3,006,434	+		EFB2_02868	0.43	+0.2
3,006,434	+		EFB2_02868	0.43	-1.0
3,006,434	+		EFB2_02868	0.43	-0.1
3,006,434	+		EFB2_02868	0.43	+2.8
3,006,434	+		EFB2_02868	0.43	+0.6
3,006,434	+		EFB2_02868	0.43	-0.6
3,006,434	+		EFB2_02868	0.43	-0.5
3,006,435	-		EFB2_02868	0.44	-1.0
3,006,435	-		EFB2_02868	0.44	+2.2
3,006,435	-		EFB2_02868	0.44	+1.6
3,006,435	-		EFB2_02868	0.44	-0.9
3,006,435	-		EFB2_02868	0.44	-1.1
3,006,435	-		EFB2_02868	0.44	+1.2
3,006,435	-		EFB2_02868	0.44	+1.1
3,006,435	-		EFB2_02868	0.44	-1.0
3,006,435	-		EFB2_02868	0.44	-1.8
3,006,435	-		EFB2_02868	0.44	+0.2
3,006,557	+		EFB2_02868	0.55	+1.6
3,006,557	+		EFB2_02868	0.55	-0.8
3,006,557	+		EFB2_02868	0.55	+2.0
3,006,557	+		EFB2_02868	0.55	-0.6
3,006,557	+		EFB2_02868	0.55	+2.6
3,006,557	+		EFB2_02868	0.55	-1.9
3,006,557	+		EFB2_02868	0.55	+0.4
3,006,557	+		EFB2_02868	0.55	+0.1
3,006,557	+		EFB2_02868	0.55	+0.2
3,006,557	+		EFB2_02868	0.55	-0.5
3,006,557	+		EFB2_02868	0.55	-0.2
3,006,557	+		EFB2_02868	0.55	+0.2
3,006,557	+		EFB2_02868	0.55	+1.6
3,006,557	+		EFB2_02868	0.55	-0.2
3,006,557	+		EFB2_02868	0.55	+0.9
3,006,558	-		EFB2_02868	0.56	-1.1
3,006,558	-		EFB2_02868	0.56	+1.7
3,006,558	-		EFB2_02868	0.56	-0.6
3,006,558	-		EFB2_02868	0.56	-0.9
3,006,558	-		EFB2_02868	0.56	-2.0
3,006,558	-		EFB2_02868	0.56	+1.2
3,006,558	-		EFB2_02868	0.56	+0.6
3,006,558	-		EFB2_02868	0.56	-1.3
3,006,558	-		EFB2_02868	0.56	+1.0
3,006,558	-		EFB2_02868	0.56	+0.8
3,006,558	-		EFB2_02868	0.56	-1.0
3,006,558	-		EFB2_02868	0.56	-0.7
3,006,558	-		EFB2_02868	0.56	-1.4
3,006,558	-		EFB2_02868	0.56	+2.0
3,006,558	-		EFB2_02868	0.56	+1.0
3,006,558	-		EFB2_02868	0.56	-0.4
3,006,558	-		EFB2_02868	0.56	+2.6
3,006,558	-		EFB2_02868	0.56	+0.2
3,006,558	-		EFB2_02868	0.56	+1.5
3,006,558	-		EFB2_02868	0.56	-0.8
3,006,566	+		EFB2_02868	0.56	+1.1
3,006,567	-		EFB2_02868	0.56	-1.7
3,006,610	+		EFB2_02868	0.61	+0.7
3,006,610	+		EFB2_02868	0.61	-1.4
3,006,610	+		EFB2_02868	0.61	+2.0
3,006,610	+		EFB2_02868	0.61	-2.0
3,006,611	-		EFB2_02868	0.61	-0.1
3,006,638	+		EFB2_02868	0.63	+1.3
3,006,638	+		EFB2_02868	0.63	-0.5
3,006,639	-		EFB2_02868	0.63	-1.0
3,006,683	+		EFB2_02868	0.68	-0.4
3,006,684	-		EFB2_02868	0.68	-1.3
3,006,684	-		EFB2_02868	0.68	+0.5
3,006,888	+		EFB2_02868	0.88	-1.0
3,006,888	+		EFB2_02868	0.88	+0.7
3,006,888	+		EFB2_02868	0.88	-2.5
3,006,889	-		EFB2_02868	0.88	+4.2
3,006,907	+		EFB2_02868	0.90	-1.4
3,006,908	-		EFB2_02868	0.90	-0.6
3,006,954	+				-1.0
3,006,955	-				-0.6