Strain Fitness in Escherichia fergusonii Becca around EFB2_02639

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,793,680	+		EFB2_02638	0.62	+2.7
2,793,709	+		EFB2_02638	0.64	-0.3
2,793,709	+		EFB2_02638	0.64	+1.0
2,793,709	+		EFB2_02638	0.64	-0.9
2,793,709	+		EFB2_02638	0.64	-0.5
2,793,709	+		EFB2_02638	0.64	+0.6
2,793,709	+		EFB2_02638	0.64	+1.7
2,793,709	+		EFB2_02638	0.64	-0.8
2,793,709	+		EFB2_02638	0.64	-0.5
2,793,709	+		EFB2_02638	0.64	-1.2
2,793,709	+		EFB2_02638	0.64	-0.6
2,793,709	+		EFB2_02638	0.64	-0.5
2,793,709	+		EFB2_02638	0.64	+2.4
2,793,709	+		EFB2_02638	0.64	-0.6
2,793,709	+		EFB2_02638	0.64	-0.2
2,793,709	+		EFB2_02638	0.64	-0.5
2,793,709	+		EFB2_02638	0.64	-1.9
2,793,709	+		EFB2_02638	0.64	-0.3
2,793,709	+		EFB2_02638	0.64	+0.0
2,793,709	+		EFB2_02638	0.64	-0.4
2,793,709	+		EFB2_02638	0.64	-0.5
2,793,709	+		EFB2_02638	0.64	+1.4
2,793,709	+		EFB2_02638	0.64	-1.0
2,793,709	+		EFB2_02638	0.64	+1.5
2,793,709	+		EFB2_02638	0.64	-0.5
2,793,709	+		EFB2_02638	0.64	-0.5
2,793,709	+		EFB2_02638	0.64	+1.6
2,793,709	+		EFB2_02638	0.64	+0.1
2,793,709	+		EFB2_02638	0.64	+0.9
2,793,709	+		EFB2_02638	0.64	-1.2
2,793,709	+		EFB2_02638	0.64	+0.5
2,793,709	+		EFB2_02638	0.64	-1.7
2,793,709	+		EFB2_02638	0.64	-1.8
2,793,709	+		EFB2_02638	0.64	-1.1
2,793,710	-		EFB2_02638	0.64	-2.0
2,793,710	-		EFB2_02638	0.64	-1.7
2,793,710	-		EFB2_02638	0.64	+1.3
2,793,710	-		EFB2_02638	0.64	-1.2
2,793,710	-		EFB2_02638	0.64	+0.8
2,793,710	-		EFB2_02638	0.64	-0.7
2,793,710	-		EFB2_02638	0.64	+0.9
2,793,710	-		EFB2_02638	0.64	-2.1
2,793,710	-		EFB2_02638	0.64	+0.8
2,793,710	-		EFB2_02638	0.64	-0.7
2,793,710	-		EFB2_02638	0.64	-1.5
2,793,710	-		EFB2_02638	0.64	+1.4
2,793,710	-		EFB2_02638	0.64	-1.0
2,793,710	-		EFB2_02638	0.64	-0.2
2,793,710	-		EFB2_02638	0.64	+0.0
2,793,710	-		EFB2_02638	0.64	-1.6
2,793,710	-		EFB2_02638	0.64	+3.9
2,793,710	-		EFB2_02638	0.64	+1.8
2,793,710	-		EFB2_02638	0.64	+1.1
2,793,710	-		EFB2_02638	0.64	-1.6
2,793,710	-		EFB2_02638	0.64	+0.8
2,793,710	-		EFB2_02638	0.64	+2.8
2,793,710	-		EFB2_02638	0.64	-0.5
2,793,710	-		EFB2_02638	0.64	-1.1
2,793,710	-		EFB2_02638	0.64	+2.0
2,793,710	-		EFB2_02638	0.64	-0.5
2,793,710	-		EFB2_02638	0.64	+0.8
2,793,711	+		EFB2_02638	0.64	+1.6
2,793,711	+		EFB2_02638	0.64	-0.0
2,793,711	+		EFB2_02638	0.64	-0.7
2,793,712	-		EFB2_02638	0.64	+0.5
2,793,712	-		EFB2_02638	0.64	+0.0
2,793,720	+		EFB2_02638	0.64	+0.5
2,793,720	+		EFB2_02638	0.64	+0.0
2,793,720	+		EFB2_02638	0.64	-1.0
2,793,721	-		EFB2_02638	0.64	+1.0
2,793,721	-		EFB2_02638	0.64	+1.5
2,793,721	-		EFB2_02638	0.64	+2.4
2,793,721	-		EFB2_02638	0.64	-0.8
2,793,903	+		EFB2_02638	0.74	-3.1
2,793,903	+		EFB2_02638	0.74	+0.7
2,793,904	-		EFB2_02638	0.74	+1.6
2,793,946	+		EFB2_02638	0.76	-0.6
2,793,946	+		EFB2_02638	0.76	-2.9
2,793,946	+		EFB2_02638	0.76	-0.3
2,793,946	+		EFB2_02638	0.76	-1.3
2,793,947	-		EFB2_02638	0.76	-1.6
2,793,947	-		EFB2_02638	0.76	-2.0
2,793,947	-		EFB2_02638	0.76	-0.1
2,793,972	+		EFB2_02638	0.77	-0.6
2,793,972	+		EFB2_02638	0.77	-0.2
2,793,973	-		EFB2_02638	0.78	+1.9
2,793,973	-		EFB2_02638	0.78	+2.4
2,793,976	+		EFB2_02638	0.78	+0.3
2,793,977	-		EFB2_02638	0.78	-1.9
2,794,119	-		EFB2_02638	0.85	-0.1
2,794,120	+		EFB2_02638	0.85	+1.4
2,794,120	+		EFB2_02638	0.85	-2.6
2,794,120	+		EFB2_02638	0.85	-1.0
2,794,120	+		EFB2_02638	0.85	+1.8
2,794,120	+		EFB2_02638	0.85	+0.8
2,794,121	-		EFB2_02638	0.85	-1.2
2,794,121	-		EFB2_02638	0.85	+0.2
2,794,121	-		EFB2_02638	0.85	+0.8
2,794,121	-		EFB2_02638	0.85	+0.8
2,794,253	+				-0.6
2,794,253	+				-1.9
2,794,309	-				-1.6
2,794,324	+				+2.4
2,794,324	+				-2.0
2,794,324	+				-2.5
2,794,341	+				+1.0
2,794,386	+				+1.8
2,794,386	+				-2.6
2,794,387	-				-1.8
2,794,387	-				+0.8
2,794,405	+				+1.4
2,794,405	+				+0.7
2,794,445	+				-1.3
2,794,445	+				-1.3
2,794,470	-				-1.3
2,794,530	-				+0.5
2,794,535	+				-0.7
2,794,535	+				-0.5
2,794,535	+				+0.4
2,794,535	+				-0.3
2,794,536	-				-0.2
2,794,536	-				-1.4
2,794,536	-				+0.3
2,794,536	-				+1.0
2,794,536	-				-1.1
2,794,536	-				+1.1
2,794,536	-				-0.8
2,794,536	-				+2.5
2,794,536	-				+3.2
2,794,536	-				-2.0
2,794,539	+				-0.3
2,794,539	+				-1.8
2,794,540	-				-2.8
2,794,541	+				+0.2
2,794,542	-				-0.0
2,794,580	+				-1.1
2,794,580	+				+1.9
2,794,580	+				+0.6
2,794,580	+				-1.8
2,794,580	+				-0.5
2,794,580	+				+0.0
2,794,580	+				-0.2
2,794,580	+				+0.2
2,794,580	+				-0.8
2,794,580	+				-0.6
2,794,581	-				-1.6
2,794,581	-				-0.5
2,794,581	-				-0.2
2,794,581	-				+1.8
2,794,581	-				-0.2
2,794,581	-				+0.4
2,794,581	-				-0.6
2,794,581	-				-1.3
2,794,599	+				-2.2
2,794,599	+				-0.3
2,794,599	+				-1.5
2,794,603	+				+3.7
2,794,603	+				+1.8
2,794,603	+				-3.0
2,794,604	-				+0.4
2,794,633	+				-0.2
2,794,633	+				-0.2
2,794,634	-				+1.4
2,794,634	-				-1.6
2,794,671	+				+0.1
2,794,671	+				+0.8
2,794,671	+				+0.4
2,794,672	-				-0.5
2,794,672	-				+1.3
2,794,672	-				-0.3
2,794,672	-				-1.2
2,794,699	-				-1.0
2,794,740	-				-0.8
2,794,767	-				+1.0
2,794,767	-				-1.1
2,794,777	+				-0.1
2,794,777	+				-0.8
2,794,777	+				-0.9
2,794,777	+				+1.3
2,794,777	+				+0.8
2,794,777	+				+1.2
2,794,777	+				-1.2
2,794,777	+				+0.2
2,794,777	+				-0.2
2,794,778	-				+0.5
2,794,778	-				+1.1
2,794,778	-				+0.0
2,794,778	-				+1.1
2,794,879	+		EFB2_02639	0.12	-1.6
2,794,880	-		EFB2_02639	0.12	+0.5
2,794,880	-		EFB2_02639	0.12	+0.4
2,794,957	+		EFB2_02639	0.16	-0.3
2,794,957	+		EFB2_02639	0.16	+0.5
2,794,958	-		EFB2_02639	0.16	-1.2
2,794,987	+		EFB2_02639	0.17	-2.5
2,794,987	+		EFB2_02639	0.17	+0.7
2,794,988	-		EFB2_02639	0.17	-0.5
2,795,011	+		EFB2_02639	0.19	+1.4
2,795,011	+		EFB2_02639	0.19	+0.8
2,795,049	-		EFB2_02639	0.21	+1.1
2,795,056	+		EFB2_02639	0.21	-0.5
2,795,056	+		EFB2_02639	0.21	-3.4
2,795,056	+		EFB2_02639	0.21	-1.1
2,795,056	+		EFB2_02639	0.21	+3.0
2,795,067	+		EFB2_02639	0.21	+0.8
2,795,067	+		EFB2_02639	0.21	+1.5
2,795,067	+		EFB2_02639	0.21	+1.4
2,795,067	+		EFB2_02639	0.21	-0.2
2,795,067	+		EFB2_02639	0.21	+1.4
2,795,067	+		EFB2_02639	0.21	+0.3
2,795,068	-		EFB2_02639	0.22	-0.2
2,795,068	-		EFB2_02639	0.22	-2.1
2,795,068	-		EFB2_02639	0.22	+0.4
2,795,120	+		EFB2_02639	0.24	-1.5
2,795,120	+		EFB2_02639	0.24	-1.9
2,795,156	+		EFB2_02639	0.26	+1.1
2,795,187	+		EFB2_02639	0.27	-1.6
2,795,187	+		EFB2_02639	0.27	+1.4
2,795,187	+		EFB2_02639	0.27	-2.1
2,795,187	+		EFB2_02639	0.27	+0.0
2,795,187	+		EFB2_02639	0.27	+1.0
2,795,187	+		EFB2_02639	0.27	-1.8
2,795,187	+		EFB2_02639	0.27	+0.5
2,795,187	+		EFB2_02639	0.27	+1.8
2,795,187	+		EFB2_02639	0.27	-0.0
2,795,187	+		EFB2_02639	0.27	+1.5
2,795,188	-		EFB2_02639	0.28	+0.5
2,795,188	-		EFB2_02639	0.28	+0.0
2,795,188	-		EFB2_02639	0.28	-1.1
2,795,200	+		EFB2_02639	0.28	-1.6
2,795,200	+		EFB2_02639	0.28	+1.0
2,795,200	+		EFB2_02639	0.28	+0.3
2,795,200	+		EFB2_02639	0.28	+0.8
2,795,200	+		EFB2_02639	0.28	-0.8
2,795,200	+		EFB2_02639	0.28	-2.1
2,795,200	+		EFB2_02639	0.28	-1.5
2,795,200	+		EFB2_02639	0.28	-0.6
2,795,200	+		EFB2_02639	0.28	-2.0
2,795,200	+		EFB2_02639	0.28	-1.1
2,795,201	-		EFB2_02639	0.28	-0.8
2,795,201	-		EFB2_02639	0.28	-1.5
2,795,216	+		EFB2_02639	0.29	+2.8
2,795,216	+		EFB2_02639	0.29	-1.5
2,795,216	+		EFB2_02639	0.29	+0.7
2,795,216	+		EFB2_02639	0.29	-1.6
2,795,216	+		EFB2_02639	0.29	+0.5
2,795,216	+		EFB2_02639	0.29	-2.0
2,795,216	+		EFB2_02639	0.29	-0.5
2,795,216	+		EFB2_02639	0.29	+0.0
2,795,216	+		EFB2_02639	0.29	-0.7
2,795,217	-		EFB2_02639	0.29	+1.0
2,795,217	-		EFB2_02639	0.29	+2.9
2,795,217	-		EFB2_02639	0.29	+2.4
2,795,354	+		EFB2_02639	0.36	-1.1
2,795,363	+		EFB2_02639	0.36	+0.0
2,795,363	+		EFB2_02639	0.36	+1.7
2,795,363	+		EFB2_02639	0.36	+0.0
2,795,364	-		EFB2_02639	0.36	+2.4
2,795,435	+		EFB2_02639	0.40	-0.2
2,795,451	+		EFB2_02639	0.41	-2.5
2,795,451	+		EFB2_02639	0.41	+0.9
2,795,451	+		EFB2_02639	0.41	-1.5
2,795,451	+		EFB2_02639	0.41	-1.3
2,795,452	-		EFB2_02639	0.41	-1.3
2,795,452	-		EFB2_02639	0.41	+1.1
2,795,491	-		EFB2_02639	0.43	+0.3
2,795,515	+		EFB2_02639	0.44	-0.8
2,795,515	+		EFB2_02639	0.44	-1.5
2,795,515	+		EFB2_02639	0.44	-3.0
2,795,518	+		EFB2_02639	0.44	-1.9
2,795,537	+		EFB2_02639	0.45	-1.0
2,795,542	+		EFB2_02639	0.45	+2.1
2,795,542	+		EFB2_02639	0.45	+2.7
2,795,542	+		EFB2_02639	0.45	-1.2
2,795,612	+		EFB2_02639	0.49	+1.6
2,795,613	-		EFB2_02639	0.49	+0.9
2,795,697	+		EFB2_02639	0.53	+0.8
2,795,697	+		EFB2_02639	0.53	-1.6
2,795,697	+		EFB2_02639	0.53	-0.8
2,795,699	+		EFB2_02639	0.53	+1.8
2,795,717	+		EFB2_02639	0.54	+1.4
2,795,717	+		EFB2_02639	0.54	+0.4
2,795,717	+		EFB2_02639	0.54	-0.8
2,795,717	+		EFB2_02639	0.54	+0.0
2,795,717	+		EFB2_02639	0.54	+1.4
2,795,717	+		EFB2_02639	0.54	+2.1
2,795,717	+		EFB2_02639	0.54	-2.2
2,795,718	-		EFB2_02639	0.54	-0.6
2,795,718	-		EFB2_02639	0.54	-1.2
2,795,718	-		EFB2_02639	0.54	+2.4
2,795,756	+		EFB2_02639	0.56	-0.1
2,795,759	+		EFB2_02639	0.56	-2.0
2,795,759	+		EFB2_02639	0.56	-0.8
2,795,784	+		EFB2_02639	0.58	+0.1
2,795,784	+		EFB2_02639	0.58	+1.5
2,795,784	+		EFB2_02639	0.58	+2.6
2,795,784	+		EFB2_02639	0.58	-2.5
2,795,784	+		EFB2_02639	0.58	-2.1
2,795,784	+		EFB2_02639	0.58	+2.5
2,795,784	+		EFB2_02639	0.58	-2.3
2,795,784	+		EFB2_02639	0.58	+2.8
2,795,785	-		EFB2_02639	0.58	-0.6
2,795,785	-		EFB2_02639	0.58	+0.7
2,795,785	-		EFB2_02639	0.58	-0.1
2,795,785	-		EFB2_02639	0.58	-2.0
2,795,785	-		EFB2_02639	0.58	-0.5
2,795,848	+		EFB2_02639	0.61	+2.1
2,795,857	-		EFB2_02639	0.61	+1.0
2,795,857	-		EFB2_02639	0.61	-1.1
2,795,909	+		EFB2_02639	0.64	-1.0
2,795,916	+		EFB2_02639	0.64	+2.1
2,795,916	+		EFB2_02639	0.64	+1.3
2,795,965	+		EFB2_02639	0.67	-0.8
2,795,965	+		EFB2_02639	0.67	-1.0
2,795,965	+		EFB2_02639	0.67	-0.4
2,795,965	+		EFB2_02639	0.67	-0.6
2,795,965	+		EFB2_02639	0.67	-0.2
2,795,965	+		EFB2_02639	0.67	+0.5
2,795,965	+		EFB2_02639	0.67	+0.1
2,795,965	+		EFB2_02639	0.67	-2.3
2,795,965	+		EFB2_02639	0.67	-0.4
2,795,965	+		EFB2_02639	0.67	-0.0
2,795,965	+		EFB2_02639	0.67	+1.5
2,795,965	+		EFB2_02639	0.67	-0.2
2,795,965	+		EFB2_02639	0.67	+0.6
2,795,965	+		EFB2_02639	0.67	-0.6
2,795,966	+		EFB2_02639	0.67	-1.6
2,795,966	-		EFB2_02639	0.67	-0.6
2,795,966	-		EFB2_02639	0.67	+1.5
2,795,966	-		EFB2_02639	0.67	-0.8
2,795,966	-		EFB2_02639	0.67	-0.8
2,795,968	+		EFB2_02639	0.67	+2.7
2,795,968	+		EFB2_02639	0.67	-1.1
2,795,968	+		EFB2_02639	0.67	+0.2
2,795,968	+		EFB2_02639	0.67	-0.6
2,795,968	+		EFB2_02639	0.67	+0.7
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