Strain Fitness in Escherichia fergusonii Becca around EFB2_02428

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,568,458	+		EFB2_02427	0.46	-0.1
2,568,459	-		EFB2_02427	0.46	+1.7
2,568,459	-		EFB2_02427	0.46	-0.9
2,568,540	+		EFB2_02427	0.51	-0.1
2,568,553	+		EFB2_02427	0.52	-1.5
2,568,554	-		EFB2_02427	0.52	-0.7
2,568,554	-		EFB2_02427	0.52	-0.0
2,568,688	+		EFB2_02427	0.60	-0.1
2,568,763	+		EFB2_02427	0.64	+0.8
2,568,886	+		EFB2_02427	0.71	+1.6
2,568,886	+		EFB2_02427	0.71	+2.4
2,568,908	+		EFB2_02427	0.73	-1.7
2,568,908	+		EFB2_02427	0.73	-0.1
2,568,911	+		EFB2_02427	0.73	-0.8
2,568,922	+		EFB2_02427	0.74	-0.2
2,568,922	+		EFB2_02427	0.74	+0.9
2,568,966	-		EFB2_02427	0.76	-1.6
2,568,982	+		EFB2_02427	0.77	-1.7
2,569,025	+		EFB2_02427	0.80	-0.3
2,569,027	+		EFB2_02427	0.80	+0.4
2,569,027	+		EFB2_02427	0.80	+0.6
2,569,049	-		EFB2_02427	0.81	+3.8
2,569,099	+		EFB2_02427	0.84	+0.4
2,569,099	+		EFB2_02427	0.84	+0.1
2,569,100	-		EFB2_02427	0.84	-0.6
2,569,265	+				-2.2
2,569,265	+				-1.6
2,569,265	+				+0.3
2,569,267	+				-2.3
2,569,267	+				+1.1
2,569,366	+				-0.5
2,569,372	-				+1.4
2,569,376	-				-2.4
2,569,387	+				-1.9
2,569,387	+				+0.6
2,569,387	+				-0.7
2,569,387	+				-2.0
2,569,491	+				-0.2
2,569,492	-				+2.8
2,569,552	+		EFB2_02428	0.11	+0.7
2,569,552	+		EFB2_02428	0.11	+0.4
2,569,552	+		EFB2_02428	0.11	-0.1
2,569,552	+		EFB2_02428	0.11	-0.2
2,569,552	+		EFB2_02428	0.11	+0.1
2,569,552	+		EFB2_02428	0.11	-0.6
2,569,553	-		EFB2_02428	0.11	-0.7
2,569,553	-		EFB2_02428	0.11	-0.1
2,569,583	+		EFB2_02428	0.14	-1.9
2,569,594	+		EFB2_02428	0.14	-0.9
2,569,611	+		EFB2_02428	0.15	+1.4
2,569,612	-		EFB2_02428	0.16	+2.0
2,569,707	+		EFB2_02428	0.22	+0.5
2,569,877	+		EFB2_02428	0.34	+0.6
2,569,878	-		EFB2_02428	0.34	-0.6
2,569,896	-		EFB2_02428	0.35	+0.1
2,569,957	+		EFB2_02428	0.40	+0.4
2,569,958	-		EFB2_02428	0.40	-0.7
2,569,969	+		EFB2_02428	0.40	-1.0
2,569,977	-		EFB2_02428	0.41	-1.0
2,569,977	-		EFB2_02428	0.41	-0.4
2,570,013	+		EFB2_02428	0.43	-0.8
2,570,013	+		EFB2_02428	0.43	+1.4
2,570,013	+		EFB2_02428	0.43	-0.4
2,570,013	+		EFB2_02428	0.43	+1.2
2,570,013	+		EFB2_02428	0.43	-1.8
2,570,018	+		EFB2_02428	0.44	-1.3
2,570,018	+		EFB2_02428	0.44	+2.4
2,570,028	+		EFB2_02428	0.44	+1.4
2,570,028	+		EFB2_02428	0.44	-0.2
2,570,028	+		EFB2_02428	0.44	-0.3
2,570,033	+		EFB2_02428	0.45	-0.1
2,570,033	+		EFB2_02428	0.45	-0.9
2,570,033	+		EFB2_02428	0.45	-1.4
2,570,033	+		EFB2_02428	0.45	+1.3
2,570,034	-		EFB2_02428	0.45	+2.1
2,570,034	-		EFB2_02428	0.45	+0.1
2,570,034	-		EFB2_02428	0.45	+2.7
2,570,040	+		EFB2_02428	0.45	+0.0
2,570,040	+		EFB2_02428	0.45	+2.9
2,570,041	-		EFB2_02428	0.45	+0.1
2,570,041	-		EFB2_02428	0.45	+1.0
2,570,041	-		EFB2_02428	0.45	+0.9
2,570,093	-		EFB2_02428	0.49	+2.4
2,570,095	+		EFB2_02428	0.49	-0.4
2,570,104	+		EFB2_02428	0.50	+1.0
2,570,104	+		EFB2_02428	0.50	-2.6
2,570,113	+		EFB2_02428	0.50	-2.0
2,570,113	+		EFB2_02428	0.50	+0.1
2,570,113	+		EFB2_02428	0.50	-1.5
2,570,113	+		EFB2_02428	0.50	-2.0
2,570,113	+		EFB2_02428	0.50	+1.2
2,570,113	+		EFB2_02428	0.50	+0.0
2,570,113	+		EFB2_02428	0.50	-0.1
2,570,113	+		EFB2_02428	0.50	-0.1
2,570,113	+		EFB2_02428	0.50	+2.4
2,570,114	-		EFB2_02428	0.50	-1.0
2,570,114	-		EFB2_02428	0.50	+0.4
2,570,114	-		EFB2_02428	0.50	-1.3
2,570,114	-		EFB2_02428	0.50	-2.0
2,570,114	-		EFB2_02428	0.50	-1.6
2,570,114	-		EFB2_02428	0.50	-0.7
2,570,114	-		EFB2_02428	0.50	+1.6
2,570,114	-		EFB2_02428	0.50	-2.0
2,570,114	-		EFB2_02428	0.50	+1.8
2,570,126	+		EFB2_02428	0.51	-2.5
2,570,126	+		EFB2_02428	0.51	+3.4
2,570,127	-		EFB2_02428	0.51	-0.9
2,570,127	-		EFB2_02428	0.51	-0.6
2,570,127	-		EFB2_02428	0.51	-0.1
2,570,152	+		EFB2_02428	0.53	-1.0
2,570,152	+		EFB2_02428	0.53	+0.1
2,570,194	+		EFB2_02428	0.56	+0.4
2,570,195	-		EFB2_02428	0.56	+3.2
2,570,216	+		EFB2_02428	0.57	-1.8
2,570,217	-		EFB2_02428	0.58	-2.3
2,570,230	+		EFB2_02428	0.58	+0.1
2,570,230	+		EFB2_02428	0.58	-0.6
2,570,231	-		EFB2_02428	0.59	+3.0
2,570,240	+		EFB2_02428	0.59	-0.6
2,570,240	+		EFB2_02428	0.59	+2.2
2,570,327	-		EFB2_02428	0.65	-0.1
2,570,327	-		EFB2_02428	0.65	-1.3
2,570,330	+		EFB2_02428	0.65	+0.1
2,570,331	-		EFB2_02428	0.65	+2.4
2,570,333	+		EFB2_02428	0.66	-2.1
2,570,333	+		EFB2_02428	0.66	+0.9
2,570,333	+		EFB2_02428	0.66	-0.9
2,570,333	+		EFB2_02428	0.66	-0.9
2,570,333	+		EFB2_02428	0.66	+1.4
2,570,333	+		EFB2_02428	0.66	+0.9
2,570,333	+		EFB2_02428	0.66	+1.0
2,570,333	+		EFB2_02428	0.66	+1.4
2,570,333	+		EFB2_02428	0.66	-0.6
2,570,333	+		EFB2_02428	0.66	-1.6
2,570,333	+		EFB2_02428	0.66	+0.6
2,570,333	+		EFB2_02428	0.66	-2.4
2,570,333	+		EFB2_02428	0.66	+0.4
2,570,333	+		EFB2_02428	0.66	+0.1
2,570,333	+		EFB2_02428	0.66	+1.3
2,570,333	+		EFB2_02428	0.66	-1.0
2,570,333	+		EFB2_02428	0.66	-0.9
2,570,334	-		EFB2_02428	0.66	+0.1
2,570,334	-		EFB2_02428	0.66	+0.6
2,570,334	-		EFB2_02428	0.66	+1.4
2,570,334	-		EFB2_02428	0.66	+0.9
2,570,334	-		EFB2_02428	0.66	+1.4
2,570,334	-		EFB2_02428	0.66	-1.4
2,570,334	-		EFB2_02428	0.66	+0.4
2,570,334	-		EFB2_02428	0.66	-0.7
2,570,334	-		EFB2_02428	0.66	-0.6
2,570,334	-		EFB2_02428	0.66	-0.6
2,570,334	-		EFB2_02428	0.66	-1.5
2,570,334	-		EFB2_02428	0.66	-1.7
2,570,334	-		EFB2_02428	0.66	-0.7
2,570,334	-		EFB2_02428	0.66	+1.3
2,570,334	-		EFB2_02428	0.66	+3.2
2,570,334	-		EFB2_02428	0.66	+2.4
2,570,334	-		EFB2_02428	0.66	-0.9
2,570,344	+		EFB2_02428	0.66	-1.9
2,570,365	+		EFB2_02428	0.68	+0.4
2,570,381	+		EFB2_02428	0.69	-2.1
2,570,381	+		EFB2_02428	0.69	+1.3
2,570,382	-		EFB2_02428	0.69	-1.0
2,570,414	+		EFB2_02428	0.71	-1.5
2,570,415	-		EFB2_02428	0.71	-0.7
2,570,415	-		EFB2_02428	0.71	-1.4
2,570,415	-		EFB2_02428	0.71	-1.7
2,570,415	-		EFB2_02428	0.71	-1.4
2,570,416	+		EFB2_02428	0.71	+1.1
2,570,417	-		EFB2_02428	0.71	+0.5
2,570,417	-		EFB2_02428	0.71	+3.1
2,570,417	-		EFB2_02428	0.71	-0.2
2,570,422	+		EFB2_02428	0.72	-2.4
2,570,422	+		EFB2_02428	0.72	-0.9
2,570,422	+		EFB2_02428	0.72	+1.1
2,570,422	+		EFB2_02428	0.72	+0.7
2,570,422	+		EFB2_02428	0.72	+0.4
2,570,422	+		EFB2_02428	0.72	+1.2
2,570,423	-		EFB2_02428	0.72	-2.0
2,570,423	-		EFB2_02428	0.72	-2.0
2,570,423	-		EFB2_02428	0.72	-1.1
2,570,423	-		EFB2_02428	0.72	+2.2
2,570,460	+		EFB2_02428	0.74	-0.9
2,570,466	-		EFB2_02428	0.75	+0.4
2,570,466	-		EFB2_02428	0.75	-1.4
2,570,509	+		EFB2_02428	0.78	-1.1
2,570,509	+		EFB2_02428	0.78	-2.3
2,570,573	+		EFB2_02428	0.82	-1.6
2,570,585	+		EFB2_02428	0.83	-2.3
2,570,622	+		EFB2_02428	0.86	+0.6
2,570,643	+		EFB2_02428	0.87	+2.2
2,570,643	+		EFB2_02428	0.87	+0.3
2,570,643	+		EFB2_02428	0.87	-1.8
2,570,643	+		EFB2_02428	0.87	-1.4
2,570,723	+				-2.3
2,570,723	+				+1.4
2,570,723	+				-1.2
2,570,723	+				-2.6
2,570,723	+				-0.3
2,570,724	-				+2.4
2,570,732	-				+1.1
2,570,766	+				-0.5
2,570,770	+				-1.0
2,570,770	+				-2.4
2,570,770	+				-0.2
2,570,770	+				-1.5
2,570,770	+				-0.6
2,570,770	+				-0.4
2,570,770	+				+0.6
2,570,770	+				+1.0
2,570,770	+				+0.1
2,570,770	+				+0.6
2,570,770	+				+1.4
2,570,783	+				-1.5
2,570,821	+				-1.6
2,570,821	+				-1.5
2,570,821	+				-1.1
2,570,821	+				+0.3
2,570,822	-				-1.1
2,570,822	-				+2.4
2,570,823	+				+0.4
2,570,824	-				+0.3
2,570,842	-				-0.7
2,570,881	+				-0.6
2,570,881	+				+2.4
2,570,881	+				+2.7
2,570,881	+				-2.1
2,570,882	-				-1.0
2,570,885	+				+0.1
2,570,885	+				+0.8
2,570,885	+				+0.9
2,570,885	+				+0.2
2,570,885	+				+3.2
2,570,885	+				-0.4
2,570,885	+				-2.1
2,570,885	+				+0.3
2,570,885	+				+0.2
2,570,885	+				+5.0
2,570,885	+				+0.7
2,570,885	+				-0.3
2,570,885	+				-1.7
2,570,885	+				-1.1
2,570,885	+				+0.0
2,570,885	+				-2.8
2,570,885	+				-1.4
2,570,885	+				+1.9
2,570,885	+				-0.9
2,570,885	+				-2.5
2,570,885	+				-0.7
2,570,886	-				-1.4
2,570,886	-				+0.4
2,570,886	-				-1.0
2,570,886	-				+0.7
2,570,886	-				-0.3
2,570,886	-				-0.6
2,570,886	-				+2.1
2,570,886	-				-2.6
2,570,886	-				-1.3
2,570,886	-				+2.0
2,570,886	-				+0.8
2,570,886	-				-0.7
2,570,886	-				-1.8
2,570,886	-				-1.1
2,570,886	-				-1.6
2,570,886	-				+2.7
2,570,886	-				+1.0
2,570,886	-				-0.3
2,570,886	-				+0.5
2,570,886	-				+2.0
2,570,886	-				-0.4
2,570,886	-				-2.0
2,570,886	-				+0.2
2,570,889	+				-0.0
2,570,889	+				-0.6
2,570,890	-				+1.1
2,570,890	-				+0.4
2,570,890	-				-1.7
2,570,890	-				+0.5
2,570,901	+				+0.0
2,570,901	+				+0.1
2,570,901	+				-0.2
2,570,901	+				+1.2
2,570,901	+				-2.4
2,570,902	-				-2.6
2,570,902	-				+2.1
2,570,902	-				+0.1
2,570,902	-				+0.2
2,570,903	+				+0.9
2,570,903	+				+0.1
2,570,903	+				+0.2
2,570,903	+				-1.1
2,570,904	-				+0.0
2,570,904	-				+1.0
2,570,904	-				-1.6
2,570,904	-				-3.1
2,570,906	+		EFB2_02429	0.10	+0.1
2,570,907	-		EFB2_02429	0.11	-0.7
2,570,907	-		EFB2_02429	0.11	-0.1
2,570,931	+		EFB2_02429	0.21	-1.7
2,570,931	+		EFB2_02429	0.21	+0.7
2,570,931	+		EFB2_02429	0.21	+0.9
2,570,931	+		EFB2_02429	0.21	-2.5
2,570,931	+		EFB2_02429	0.21	+2.0
2,570,932	-		EFB2_02429	0.22	+0.9
2,570,932	-		EFB2_02429	0.22	-0.7
2,570,944	-		EFB2_02429	0.27	-1.1
2,570,956	+		EFB2_02429	0.33	-1.7
2,570,956	+		EFB2_02429	0.33	+0.4
2,570,957	-		EFB2_02429	0.33	-2.1
2,571,015	+		EFB2_02429	0.60	+0.5
2,571,015	+		EFB2_02429	0.60	-0.6
2,571,015	+		EFB2_02429	0.60	+0.9
2,571,015	+		EFB2_02429	0.60	-0.9
2,571,015	+		EFB2_02429	0.60	-1.1
2,571,015	+		EFB2_02429	0.60	-0.6
2,571,015	+		EFB2_02429	0.60	-3.1
2,571,015	+		EFB2_02429	0.60	+0.7
2,571,016	-		EFB2_02429	0.60	+0.0
2,571,016	-		EFB2_02429	0.60	-2.0
2,571,067	-		EFB2_02429	0.84	-2.5
2,571,067	-		EFB2_02429	0.84	-0.2
2,571,079	+		EFB2_02429	0.89	+0.4
2,571,080	-		EFB2_02429	0.89	-0.1
2,571,080	-		EFB2_02429	0.89	+0.4
2,571,088	+				-2.6
2,571,088	+				+1.6
2,571,089	-				-1.3
2,571,089	-				-0.3
2,571,135	+				-0.4
2,571,135	+				+0.4
2,571,135	+				-2.2
2,571,135	+				+1.4
2,571,136	-				-0.4
2,571,136	-				-2.3
2,571,136	-				+1.3
2,571,136	-				-2.0
2,571,136	-				-1.8
2,571,136	-				-1.6
2,571,136	-				-0.4
2,571,136	-				-0.3
2,571,144	+				+1.3
2,571,145	-				-0.6
2,571,145	-				+0.9
2,571,145	-				-0.6
2,571,145	-				-2.4
2,571,152	+				+0.6
2,571,152	+				-0.9
2,571,153	-				+1.4
2,571,153	-				-0.5
2,571,162	-				+0.7
2,571,162	-				-0.6
2,571,162	-				-0.9
2,571,184	+		EFB2_02430	0.13	+3.3
2,571,185	-		EFB2_02430	0.13	-2.0
2,571,185	-		EFB2_02430	0.13	-0.7
2,571,185	-		EFB2_02430	0.13	+0.4
2,571,185	-		EFB2_02430	0.13	-1.7
2,571,185	-		EFB2_02430	0.13	-0.1
2,571,185	-		EFB2_02430	0.13	+1.4
2,571,185	-		EFB2_02430	0.13	-0.8
2,571,199	-		EFB2_02430	0.17	+1.2
2,571,199	-		EFB2_02430	0.17	+2.3
2,571,202	+		EFB2_02430	0.18	-1.0
2,571,202	+		EFB2_02430	0.18	-2.6
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2,571,481	+				-1.7
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