Strain Fitness in Escherichia fergusonii Becca around EFB2_02417

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,556,589	-				+0.8
2,556,597	-				+3.0
2,556,597	-				+2.8
2,556,606	+				+0.4
2,556,606	+				-2.1
2,556,606	+				+2.1
2,556,607	-				+0.1
2,556,607	-				-1.6
2,556,607	-				+0.1
2,556,607	-				-1.5
2,556,607	-				-0.9
2,556,607	-				-0.0
2,556,607	-				+0.9
2,556,607	-				+0.1
2,556,629	+				-1.0
2,556,658	+				+1.4
2,556,658	+				+0.4
2,556,658	+				-0.9
2,556,659	-				+1.1
2,556,659	-				+2.0
2,556,659	-				-1.0
2,556,660	+				+1.0
2,556,660	+				+2.4
2,556,660	+				+3.2
2,556,660	+				-1.0
2,556,661	-				+1.2
2,556,661	-				-0.6
2,556,661	-				-0.8
2,556,661	-				-1.0
2,556,661	-				+0.7
2,556,661	-				-0.0
2,556,661	-				+0.4
2,556,661	-				-1.4
2,556,661	-				+1.9
2,556,664	+				-1.3
2,556,664	+				+1.0
2,556,664	+				-0.7
2,556,665	-				+0.1
2,556,665	-				+1.0
2,556,682	+				+0.3
2,556,734	+				+0.4
2,556,734	+				-0.4
2,556,734	+				-1.6
2,556,735	-				-1.6
2,556,735	-				-0.4
2,556,735	-				+1.0
2,556,735	-				-0.4
2,556,735	-				-0.0
2,556,735	-				+1.1
2,556,735	-				-2.6
2,556,735	-				-0.0
2,556,735	-				+1.4
2,556,784	+				-1.0
2,556,785	-				+0.3
2,556,785	-				+1.2
2,556,785	-				-0.9
2,556,874	-		EFB2_02416	0.13	-0.4
2,556,912	-		EFB2_02416	0.19	-1.5
2,556,912	-		EFB2_02416	0.19	-0.1
2,556,965	+		EFB2_02416	0.26	-0.9
2,556,966	-		EFB2_02416	0.27	-1.8
2,556,966	-		EFB2_02416	0.27	-1.3
2,556,966	-		EFB2_02416	0.27	+0.4
2,556,966	-		EFB2_02416	0.27	-0.1
2,556,966	-		EFB2_02416	0.27	-0.9
2,556,966	-		EFB2_02416	0.27	+1.6
2,556,967	+		EFB2_02416	0.27	+0.9
2,556,967	+		EFB2_02416	0.27	-0.1
2,556,968	-		EFB2_02416	0.27	-1.1
2,556,968	-		EFB2_02416	0.27	+2.0
2,557,249	+		EFB2_02416	0.68	+0.9
2,557,249	+		EFB2_02416	0.68	+3.4
2,557,250	-		EFB2_02416	0.68	+0.1
2,557,250	-		EFB2_02416	0.68	+0.9
2,557,250	-		EFB2_02416	0.68	+0.7
2,557,250	-		EFB2_02416	0.68	+0.4
2,557,250	-		EFB2_02416	0.68	+1.4
2,557,250	-		EFB2_02416	0.68	-0.7
2,557,250	-		EFB2_02416	0.68	+2.0
2,557,298	+		EFB2_02416	0.75	-1.1
2,557,302	-		EFB2_02416	0.76	-1.1
2,557,302	-		EFB2_02416	0.76	+2.0
2,557,413	-				+2.0
2,557,418	-				-0.3
2,557,448	+				+1.5
2,557,448	+				-0.7
2,557,449	-				-1.1
2,557,449	-				-1.0
2,557,492	+				+2.4
2,557,493	-				+1.3
2,557,493	-				+2.3
2,557,506	+				+0.7
2,557,506	+				+0.1
2,557,506	+				+2.8
2,557,507	-				-1.8
2,557,551	-				+0.1
2,557,560	-				+1.0
2,557,586	+				+0.1
2,557,586	+				+0.3
2,557,586	+				-0.8
2,557,586	+				-0.2
2,557,586	+				+0.9
2,557,587	-				+1.7
2,557,587	-				+0.2
2,557,587	-				+1.7
2,557,623	+				+0.1
2,557,624	-				+0.7
2,557,624	-				-0.3
2,557,696	-		EFB2_02417	0.18	-0.6
2,557,703	+		EFB2_02417	0.19	-0.3
2,557,719	+		EFB2_02417	0.22	-0.6
2,557,720	-		EFB2_02417	0.22	-2.2
2,557,720	-		EFB2_02417	0.22	+0.2
2,557,734	+		EFB2_02417	0.24	+0.7
2,557,873	-		EFB2_02417	0.42	+1.8
2,557,884	-		EFB2_02417	0.44	-0.4
2,557,884	-		EFB2_02417	0.44	-1.3
2,557,914	+		EFB2_02417	0.48	+1.2
2,557,915	-		EFB2_02417	0.48	+0.5
2,557,917	+		EFB2_02417	0.48	-2.2
2,557,917	+		EFB2_02417	0.48	-0.7
2,557,917	+		EFB2_02417	0.48	+1.8
2,557,918	-		EFB2_02417	0.48	-2.5
2,557,918	-		EFB2_02417	0.48	+1.9
2,557,918	-		EFB2_02417	0.48	+0.4
2,557,918	-		EFB2_02417	0.48	-1.4
2,557,918	-		EFB2_02417	0.48	+1.2
2,557,920	+		EFB2_02417	0.48	+0.3
2,557,920	+		EFB2_02417	0.48	-1.0
2,557,921	-		EFB2_02417	0.49	+1.5
2,557,921	-		EFB2_02417	0.49	-2.6
2,557,921	-		EFB2_02417	0.49	+0.1
2,557,932	+		EFB2_02417	0.50	-0.1
2,557,932	+		EFB2_02417	0.50	-1.4
2,557,932	+		EFB2_02417	0.50	-0.4
2,557,933	-		EFB2_02417	0.50	+1.2
2,557,933	-		EFB2_02417	0.50	-2.4
2,557,933	-		EFB2_02417	0.50	-0.7
2,557,933	-		EFB2_02417	0.50	+0.3
2,557,933	-		EFB2_02417	0.50	+4.7
2,557,933	-		EFB2_02417	0.50	+0.6
2,557,933	-		EFB2_02417	0.50	+1.4
2,557,933	-		EFB2_02417	0.50	-0.7
2,557,945	-		EFB2_02417	0.52	-1.7
2,557,968	+		EFB2_02417	0.55	-0.2
2,557,968	+		EFB2_02417	0.55	-1.0
2,557,968	+		EFB2_02417	0.55	-0.7
2,557,968	+		EFB2_02417	0.55	+2.3
2,557,968	+		EFB2_02417	0.55	+2.0
2,557,968	+		EFB2_02417	0.55	+1.0
2,557,968	+		EFB2_02417	0.55	+0.1
2,557,968	+		EFB2_02417	0.55	+0.6
2,557,968	+		EFB2_02417	0.55	-1.4
2,557,968	+		EFB2_02417	0.55	+1.4
2,557,968	+		EFB2_02417	0.55	+0.4
2,557,968	+		EFB2_02417	0.55	+2.6
2,557,968	+		EFB2_02417	0.55	+1.2
2,557,968	+		EFB2_02417	0.55	+1.0
2,557,969	-		EFB2_02417	0.55	+1.5
2,557,969	-		EFB2_02417	0.55	-2.0
2,557,969	-		EFB2_02417	0.55	+1.4
2,557,969	-		EFB2_02417	0.55	-2.0
2,557,969	-		EFB2_02417	0.55	+1.3
2,557,969	-		EFB2_02417	0.55	+0.1
2,557,969	-		EFB2_02417	0.55	+0.8
2,557,969	-		EFB2_02417	0.55	+2.4
2,557,969	-		EFB2_02417	0.55	+1.1
2,557,969	-		EFB2_02417	0.55	+0.3
2,557,969	-		EFB2_02417	0.55	-1.0
2,557,969	-		EFB2_02417	0.55	-1.2
2,557,969	-		EFB2_02417	0.55	-0.6
2,557,970	+		EFB2_02417	0.55	-0.2
2,557,970	+		EFB2_02417	0.55	+3.4
2,557,970	+		EFB2_02417	0.55	+1.5
2,557,970	+		EFB2_02417	0.55	-1.0
2,557,970	+		EFB2_02417	0.55	+3.4
2,557,970	+		EFB2_02417	0.55	-0.7
2,557,970	+		EFB2_02417	0.55	+0.4
2,557,970	+		EFB2_02417	0.55	+0.4
2,557,970	+		EFB2_02417	0.55	+1.9
2,557,970	+		EFB2_02417	0.55	-1.0
2,557,970	+		EFB2_02417	0.55	+2.9
2,557,970	+		EFB2_02417	0.55	-1.9
2,557,970	+		EFB2_02417	0.55	+0.5
2,557,970	+		EFB2_02417	0.55	-1.1
2,557,970	+		EFB2_02417	0.55	-1.0
2,557,970	+		EFB2_02417	0.55	+0.6
2,557,970	+		EFB2_02417	0.55	+0.2
2,557,970	+		EFB2_02417	0.55	+2.3
2,557,970	+		EFB2_02417	0.55	+0.4
2,557,970	+		EFB2_02417	0.55	-1.3
2,557,970	+		EFB2_02417	0.55	-2.0
2,557,970	+		EFB2_02417	0.55	-2.0
2,557,970	+		EFB2_02417	0.55	-1.1
2,557,970	+		EFB2_02417	0.55	-2.8
2,557,970	+		EFB2_02417	0.55	-1.5
2,557,970	+		EFB2_02417	0.55	+0.4
2,557,970	+		EFB2_02417	0.55	-2.2
2,557,970	+		EFB2_02417	0.55	+0.4
2,557,971	-		EFB2_02417	0.55	+2.1
2,557,971	-		EFB2_02417	0.55	+0.7
2,557,971	-		EFB2_02417	0.55	-0.4
2,557,971	-		EFB2_02417	0.55	-0.4
2,557,971	-		EFB2_02417	0.55	-2.3
2,557,971	-		EFB2_02417	0.55	-0.0
2,557,971	-		EFB2_02417	0.55	-3.6
2,557,971	-		EFB2_02417	0.55	+0.2
2,557,971	-		EFB2_02417	0.55	-2.0
2,557,971	-		EFB2_02417	0.55	+0.6
2,557,971	-		EFB2_02417	0.55	-0.3
2,557,971	-		EFB2_02417	0.55	+1.8
2,557,971	-		EFB2_02417	0.55	+1.4
2,557,971	-		EFB2_02417	0.55	+0.9
2,557,971	-		EFB2_02417	0.55	-0.4
2,557,971	-		EFB2_02417	0.55	-0.3
2,557,971	-		EFB2_02417	0.55	+0.5
2,557,971	-		EFB2_02417	0.55	+0.5
2,557,971	-		EFB2_02417	0.55	+1.0
2,557,971	-		EFB2_02417	0.55	+2.3
2,557,971	-		EFB2_02417	0.55	-0.4
2,557,971	-		EFB2_02417	0.55	+0.0
2,557,971	-		EFB2_02417	0.55	-0.1
2,557,971	-		EFB2_02417	0.55	-1.4
2,557,971	-		EFB2_02417	0.55	+0.2
2,557,971	-		EFB2_02417	0.55	-1.4
2,557,971	-		EFB2_02417	0.55	-1.5
2,557,971	-		EFB2_02417	0.55	+0.9
2,557,971	-		EFB2_02417	0.55	+0.9
2,557,971	-		EFB2_02417	0.55	-2.2
2,557,971	-		EFB2_02417	0.55	-1.3
2,557,971	-		EFB2_02417	0.55	-0.3
2,557,971	-		EFB2_02417	0.55	+0.4
2,557,971	-		EFB2_02417	0.55	+1.6
2,557,971	-		EFB2_02417	0.55	+1.9
2,557,972	+		EFB2_02417	0.55	+0.4
2,557,972	+		EFB2_02417	0.55	-1.6
2,557,972	+		EFB2_02417	0.55	+1.1
2,557,972	+		EFB2_02417	0.55	+1.2
2,557,972	+		EFB2_02417	0.55	+0.1
2,557,972	+		EFB2_02417	0.55	+0.9
2,557,972	+		EFB2_02417	0.55	+1.2
2,557,972	+		EFB2_02417	0.55	-2.0
2,557,972	+		EFB2_02417	0.55	-1.0
2,557,972	+		EFB2_02417	0.55	+0.3
2,557,972	+		EFB2_02417	0.55	-1.4
2,557,972	+		EFB2_02417	0.55	+2.3
2,557,972	+		EFB2_02417	0.55	-0.1
2,557,973	-		EFB2_02417	0.56	+0.4
2,557,973	-		EFB2_02417	0.56	-1.4
2,557,973	-		EFB2_02417	0.56	-0.1
2,557,973	-		EFB2_02417	0.56	-2.8
2,557,973	-		EFB2_02417	0.56	-0.7
2,557,973	-		EFB2_02417	0.56	+2.4
2,557,973	-		EFB2_02417	0.56	+0.1
2,557,973	-		EFB2_02417	0.56	-0.6
2,557,973	-		EFB2_02417	0.56	+0.4
2,557,973	-		EFB2_02417	0.56	+1.3
2,557,973	-		EFB2_02417	0.56	-1.1
2,557,973	-		EFB2_02417	0.56	-0.6
2,557,973	-		EFB2_02417	0.56	-1.8
2,557,973	-		EFB2_02417	0.56	-0.3
2,557,973	-		EFB2_02417	0.56	+0.7
2,557,973	-		EFB2_02417	0.56	+0.7
2,557,973	-		EFB2_02417	0.56	-1.4
2,557,973	-		EFB2_02417	0.56	+2.1
2,557,973	-		EFB2_02417	0.56	+0.6
2,557,973	-		EFB2_02417	0.56	-0.6
2,557,973	-		EFB2_02417	0.56	+1.4
2,557,973	-		EFB2_02417	0.56	-0.2
2,557,973	-		EFB2_02417	0.56	-2.1
2,557,992	+		EFB2_02417	0.58	-1.1
2,557,992	+		EFB2_02417	0.58	-0.6
2,557,993	-		EFB2_02417	0.58	-0.4
2,558,069	-		EFB2_02417	0.68	+0.1
2,558,082	+		EFB2_02417	0.70	-0.4
2,558,082	+		EFB2_02417	0.70	-1.1
2,558,082	+		EFB2_02417	0.70	-1.4
2,558,083	-		EFB2_02417	0.70	-2.4
2,558,083	-		EFB2_02417	0.70	+3.4
2,558,083	-		EFB2_02417	0.70	+0.6
2,558,124	+		EFB2_02417	0.76	+1.4
2,558,159	+		EFB2_02417	0.80	-0.7
2,558,159	+		EFB2_02417	0.80	+1.4
2,558,159	+		EFB2_02417	0.80	-2.8
2,558,159	+		EFB2_02417	0.80	-1.6
2,558,160	-		EFB2_02417	0.81	-0.9
2,558,160	-		EFB2_02417	0.81	+0.3
2,558,160	-		EFB2_02417	0.81	-2.9
2,558,160	-		EFB2_02417	0.81	+1.7
2,558,160	-		EFB2_02417	0.81	+0.3
2,558,160	-		EFB2_02417	0.81	-2.5
2,558,160	-		EFB2_02417	0.81	-0.9
2,558,160	-		EFB2_02417	0.81	+0.3
2,558,160	-		EFB2_02417	0.81	+1.0
2,558,160	-		EFB2_02417	0.81	+2.4
2,558,160	-		EFB2_02417	0.81	+0.7
2,558,160	-		EFB2_02417	0.81	-0.9
2,558,160	-		EFB2_02417	0.81	-0.2
2,558,160	-		EFB2_02417	0.81	+0.9
2,558,160	-		EFB2_02417	0.81	+2.7
2,558,166	+		EFB2_02417	0.81	+0.1
2,558,166	+		EFB2_02417	0.81	-0.9
2,558,167	-		EFB2_02417	0.82	-0.7
2,558,167	-		EFB2_02417	0.82	+1.3
2,558,167	-		EFB2_02417	0.82	+1.0
2,558,229	+		EFB2_02417	0.90	+0.4
2,558,293	+				-0.1
2,558,294	-				-2.5
2,558,294	-				+0.3
2,558,336	+				+0.7
2,558,341	+				+2.4
2,558,341	+				+0.7
2,558,342	-				+0.8
2,558,355	+				-1.3
2,558,355	+				-1.1
2,558,355	+				-0.5
2,558,356	-				-0.7
2,558,356	-				-3.0
2,558,356	-				+1.9
2,558,356	-				-0.9
2,558,356	-				+1.7
2,558,365	+				-0.5
2,558,368	+				-0.1
2,558,369	-				-4.0
2,558,401	-				+0.8
2,558,401	-				+2.4
2,558,406	+				+1.3
2,558,406	+				-1.4
2,558,407	-				-0.7
2,558,407	-				-0.4
2,558,407	-				+0.4
2,558,407	-				-1.4
2,558,407	-				-1.3
2,558,412	-				+0.6
2,558,483	+				-2.4
2,558,547	+				-1.0
2,558,548	-				+0.1
2,558,568	+				+0.9
2,558,568	+				-0.9
2,558,569	-				-3.3
2,558,569	-				+0.9
2,558,569	-				-2.0
2,558,569	-				+0.6
2,558,611	+				+1.2
2,558,611	+				-0.7
2,558,611	+				-1.1
2,558,611	+				-2.1
2,558,611	+				+2.1
2,558,611	+				+1.4
2,558,612	-				+0.6
2,558,612	-				-1.8
2,558,612	-				-1.4
2,558,612	-				-2.0
2,558,612	-				-1.6
2,558,612	-				-0.5
2,558,612	-				-0.1
2,558,612	-				-0.1
2,558,612	-				-0.9
2,558,612	-				-0.6
2,558,612	-				+0.9
2,558,614	+				-0.1
2,558,614	+				-0.1
2,558,614	+				-1.0
2,558,614	+				-0.4
2,558,614	+				-1.0
2,558,614	+				+1.1
2,558,615	-				+1.3
2,558,644	-				-1.7
2,558,644	-				-0.6
2,558,644	-				+1.1
2,558,648	-		EFB2_02418	0.10	-1.6
2,558,648	-		EFB2_02418	0.10	+0.9
2,558,648	-		EFB2_02418	0.10	-1.6
2,558,656	+		EFB2_02418	0.11	+0.9
2,558,689	+		EFB2_02418	0.12	+3.1
2,558,689	+		EFB2_02418	0.12	+1.0
2,558,703	+		EFB2_02418	0.13	-2.0
2,558,703	+		EFB2_02418	0.13	-0.6
2,558,703	+		EFB2_02418	0.13	+2.3
2,558,704	-		EFB2_02418	0.13	-1.7
2,558,704	-		EFB2_02418	0.13	-0.7
2,558,755	+		EFB2_02418	0.15	-0.6
2,558,755	+		EFB2_02418	0.15	-0.9
2,558,755	+		EFB2_02418	0.15	-0.1
2,558,755	+		EFB2_02418	0.15	-0.1
2,558,755	+		EFB2_02418	0.15	+0.0
2,558,755	+		EFB2_02418	0.15	-1.8
2,558,755	+		EFB2_02418	0.15	+0.9
2,558,755	+		EFB2_02418	0.15	-0.9
2,558,755	+		EFB2_02418	0.15	-0.7
2,558,755	+		EFB2_02418	0.15	+4.4
2,558,755	+		EFB2_02418	0.15	+3.7
2,558,755	+		EFB2_02418	0.15	+0.2
2,558,755	+		EFB2_02418	0.15	-2.0
2,558,755	+		EFB2_02418	0.15	-0.3
2,558,755	+		EFB2_02418	0.15	+0.9
2,558,755	+		EFB2_02418	0.15	+0.4
2,558,755	+		EFB2_02418	0.15	-0.1
2,558,755	+		EFB2_02418	0.15	-1.3
2,558,756	-		EFB2_02418	0.15	+2.1
2,558,756	-		EFB2_02418	0.15	-1.9
2,558,756	-		EFB2_02418	0.15	+0.1
2,558,756	-		EFB2_02418	0.15	-1.3
2,558,756	-		EFB2_02418	0.15	-1.7
2,558,756	-		EFB2_02418	0.15	-1.7
2,558,756	-		EFB2_02418	0.15	+0.6
2,558,756	-		EFB2_02418	0.15	-0.9
2,558,756	-		EFB2_02418	0.15	+0.7
2,558,756	-		EFB2_02418	0.15	-1.4
2,558,759	+		EFB2_02418	0.16	+0.3
2,558,759	+		EFB2_02418	0.16	-0.6
2,558,760	-		EFB2_02418	0.16	-2.4
2,558,760	-		EFB2_02418	0.16	-2.6
2,558,760	-		EFB2_02418	0.16	+1.7
2,558,775	+		EFB2_02418	0.16	-0.1
2,558,913	+		EFB2_02418	0.23	+0.8
2,558,913	+		EFB2_02418	0.23	+2.0
2,558,920	-		EFB2_02418	0.23	-0.3
2,558,920	-		EFB2_02418	0.23	-2.0
2,558,926	+		EFB2_02418	0.24	-0.6
2,558,957	-		EFB2_02418	0.25	+1.4
2,558,957	-		EFB2_02418	0.25	+0.3
2,558,981	-		EFB2_02418	0.26	+0.1
2,559,110	-		EFB2_02418	0.33	+1.4
2,559,170	-		EFB2_02418	0.36	+1.4
2,559,170	-		EFB2_02418	0.36	+1.2
2,559,170	-		EFB2_02418	0.36	-0.6
2,559,259	+		EFB2_02418	0.40	-2.8
2,559,259	+		EFB2_02418	0.40	-1.1
2,559,264	+		EFB2_02418	0.40	+0.6
2,559,264	+		EFB2_02418	0.40	-0.4
2,559,264	+		EFB2_02418	0.40	+0.4
2,559,264	+		EFB2_02418	0.40	+1.3
2,559,264	+		EFB2_02418	0.40	+1.0
2,559,264	+		EFB2_02418	0.40	-1.9
2,559,264	+		EFB2_02418	0.40	+0.6
2,559,264	+		EFB2_02418	0.40	+1.7
2,559,264	+		EFB2_02418	0.40	+1.4
2,559,264	+		EFB2_02418	0.40	+3.4
2,559,264	+		EFB2_02418	0.40	+3.2
2,559,264	+		EFB2_02418	0.40	+0.9
2,559,264	+		EFB2_02418	0.40	+1.5
2,559,264	+		EFB2_02418	0.40	-2.0
2,559,265	-		EFB2_02418	0.40	-0.9
2,559,265	-		EFB2_02418	0.40	+1.0
2,559,265	-		EFB2_02418	0.40	+0.1
2,559,265	-		EFB2_02418	0.40	-1.1
2,559,265	-		EFB2_02418	0.40	-0.9
2,559,265	-		EFB2_02418	0.40	-1.3
2,559,281	+		EFB2_02418	0.41	-0.2
2,559,282	-		EFB2_02418	0.41	-0.4