Strain Fitness in Escherichia fergusonii Becca around EFB2_01158

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,215,184	-		EFB2_01157	0.34	+0.4
1,215,227	-		EFB2_01157	0.39	-1.4
1,215,227	-		EFB2_01157	0.39	-0.7
1,215,227	-		EFB2_01157	0.39	+1.0
1,215,227	-		EFB2_01157	0.39	+0.9
1,215,227	-		EFB2_01157	0.39	+0.3
1,215,234	-		EFB2_01157	0.39	+0.2
1,215,246	+		EFB2_01157	0.40	+0.7
1,215,246	+		EFB2_01157	0.40	+2.0
1,215,246	+		EFB2_01157	0.40	-0.5
1,215,246	+		EFB2_01157	0.40	+3.4
1,215,246	+		EFB2_01157	0.40	-0.4
1,215,246	+		EFB2_01157	0.40	-0.2
1,215,246	+		EFB2_01157	0.40	+0.3
1,215,246	+		EFB2_01157	0.40	-2.7
1,215,246	+		EFB2_01157	0.40	-0.6
1,215,246	+		EFB2_01157	0.40	-1.7
1,215,247	-		EFB2_01157	0.41	+1.3
1,215,247	-		EFB2_01157	0.41	-1.9
1,215,247	-		EFB2_01157	0.41	-0.2
1,215,247	-		EFB2_01157	0.41	-0.7
1,215,247	-		EFB2_01157	0.41	-0.8
1,215,247	-		EFB2_01157	0.41	-1.4
1,215,247	-		EFB2_01157	0.41	+0.9
1,215,247	-		EFB2_01157	0.41	+0.3
1,215,247	-		EFB2_01157	0.41	-1.3
1,215,252	-		EFB2_01157	0.41	+0.4
1,215,260	+		EFB2_01157	0.42	+0.9
1,215,261	-		EFB2_01157	0.42	+0.0
1,215,261	-		EFB2_01157	0.42	-0.8
1,215,309	+		EFB2_01157	0.47	-0.3
1,215,310	-		EFB2_01157	0.47	-1.0
1,215,324	+		EFB2_01157	0.48	-1.3
1,215,324	+		EFB2_01157	0.48	+0.8
1,215,325	-		EFB2_01157	0.48	-1.0
1,215,366	-		EFB2_01157	0.52	-3.0
1,215,366	-		EFB2_01157	0.52	+1.6
1,215,366	-		EFB2_01157	0.52	-0.9
1,215,366	-		EFB2_01157	0.52	-0.2
1,215,366	-		EFB2_01157	0.52	-0.2
1,215,370	+		EFB2_01157	0.52	+0.4
1,215,371	-		EFB2_01157	0.53	+0.3
1,215,371	-		EFB2_01157	0.53	+0.5
1,215,371	-		EFB2_01157	0.53	-0.5
1,215,378	-		EFB2_01157	0.53	+0.6
1,215,384	-		EFB2_01157	0.54	+1.2
1,215,420	+		EFB2_01157	0.57	-0.3
1,215,420	+		EFB2_01157	0.57	+0.8
1,215,420	+		EFB2_01157	0.57	+1.2
1,215,420	+		EFB2_01157	0.57	+0.9
1,215,421	-		EFB2_01157	0.57	-0.6
1,215,421	-		EFB2_01157	0.57	+0.6
1,215,421	-		EFB2_01157	0.57	+0.0
1,215,421	-		EFB2_01157	0.57	+0.3
1,215,421	-		EFB2_01157	0.57	+1.6
1,215,450	+		EFB2_01157	0.60	-1.7
1,215,450	+		EFB2_01157	0.60	-2.5
1,215,450	+		EFB2_01157	0.60	+0.6
1,215,450	+		EFB2_01157	0.60	+2.6
1,215,450	+		EFB2_01157	0.60	-2.5
1,215,450	+		EFB2_01157	0.60	+0.2
1,215,450	+		EFB2_01157	0.60	-2.2
1,215,450	+		EFB2_01157	0.60	-2.0
1,215,451	-		EFB2_01157	0.60	+0.8
1,215,451	-		EFB2_01157	0.60	+1.0
1,215,451	-		EFB2_01157	0.60	-0.5
1,215,502	+		EFB2_01157	0.65	-2.5
1,215,502	+		EFB2_01157	0.65	-0.6
1,215,502	+		EFB2_01157	0.65	-0.9
1,215,502	+		EFB2_01157	0.65	+0.3
1,215,502	+		EFB2_01157	0.65	-0.9
1,215,502	+		EFB2_01157	0.65	-0.1
1,215,502	+		EFB2_01157	0.65	-0.4
1,215,502	+		EFB2_01157	0.65	+1.2
1,215,502	+		EFB2_01157	0.65	-0.4
1,215,502	+		EFB2_01157	0.65	+0.6
1,215,503	-		EFB2_01157	0.65	-0.5
1,215,503	-		EFB2_01157	0.65	+0.3
1,215,503	-		EFB2_01157	0.65	-0.9
1,215,503	-		EFB2_01157	0.65	+0.6
1,215,503	-		EFB2_01157	0.65	+0.3
1,215,503	-		EFB2_01157	0.65	-0.4
1,215,503	-		EFB2_01157	0.65	-0.4
1,215,503	-		EFB2_01157	0.65	+0.6
1,215,503	-		EFB2_01157	0.65	-1.1
1,215,503	-		EFB2_01157	0.65	+0.8
1,215,506	+		EFB2_01157	0.66	+0.5
1,215,507	-		EFB2_01157	0.66	+0.4
1,215,521	+		EFB2_01157	0.67	+0.0
1,215,521	+		EFB2_01157	0.67	-0.4
1,215,522	-		EFB2_01157	0.67	-2.7
1,215,522	-		EFB2_01157	0.67	-1.2
1,215,522	-		EFB2_01157	0.67	+0.1
1,215,569	+		EFB2_01157	0.72	+1.4
1,215,569	+		EFB2_01157	0.72	+0.7
1,215,569	+		EFB2_01157	0.72	+0.4
1,215,569	+		EFB2_01157	0.72	-0.4
1,215,569	+		EFB2_01157	0.72	+0.8
1,215,570	-		EFB2_01157	0.72	-0.6
1,215,570	-		EFB2_01157	0.72	+0.7
1,215,570	-		EFB2_01157	0.72	-1.2
1,215,570	-		EFB2_01157	0.72	+0.9
1,215,570	-		EFB2_01157	0.72	+1.7
1,215,584	+		EFB2_01157	0.73	+1.8
1,215,584	+		EFB2_01157	0.73	-0.9
1,215,585	-		EFB2_01157	0.73	-0.0
1,215,614	+		EFB2_01157	0.76	-1.3
1,215,615	-		EFB2_01157	0.76	-0.6
1,215,616	+		EFB2_01157	0.76	-1.7
1,215,616	+		EFB2_01157	0.76	+0.2
1,215,616	+		EFB2_01157	0.76	+0.9
1,215,616	+		EFB2_01157	0.76	-0.8
1,215,617	-		EFB2_01157	0.76	+0.3
1,215,617	-		EFB2_01157	0.76	-2.6
1,215,617	-		EFB2_01157	0.76	+0.6
1,215,617	-		EFB2_01157	0.76	-1.0
1,215,617	-		EFB2_01157	0.76	+1.5
1,215,620	+		EFB2_01157	0.76	+0.9
1,215,620	+		EFB2_01157	0.76	+0.4
1,215,620	+		EFB2_01157	0.76	-0.6
1,215,620	+		EFB2_01157	0.76	-0.0
1,215,620	+		EFB2_01157	0.76	-0.3
1,215,620	+		EFB2_01157	0.76	-0.0
1,215,620	+		EFB2_01157	0.76	+0.4
1,215,620	+		EFB2_01157	0.76	+0.8
1,215,620	+		EFB2_01157	0.76	-1.6
1,215,620	+		EFB2_01157	0.76	+1.8
1,215,620	+		EFB2_01157	0.76	+0.9
1,215,620	+		EFB2_01157	0.76	+2.8
1,215,621	-		EFB2_01157	0.77	+0.8
1,215,621	-		EFB2_01157	0.77	-0.7
1,215,621	-		EFB2_01157	0.77	-0.2
1,215,621	-		EFB2_01157	0.77	+1.2
1,215,621	-		EFB2_01157	0.77	+0.6
1,215,622	+		EFB2_01157	0.77	-0.6
1,215,622	+		EFB2_01157	0.77	-1.7
1,215,623	-		EFB2_01157	0.77	-0.4
1,215,623	-		EFB2_01157	0.77	+3.0
1,215,623	-		EFB2_01157	0.77	-0.9
1,215,623	-		EFB2_01157	0.77	+0.2
1,215,629	+		EFB2_01157	0.77	+1.3
1,215,630	-		EFB2_01157	0.77	+0.4
1,215,630	-		EFB2_01157	0.77	+0.4
1,215,632	+		EFB2_01157	0.78	-1.2
1,215,632	+		EFB2_01157	0.78	+0.4
1,215,632	+		EFB2_01157	0.78	-0.3
1,215,632	+		EFB2_01157	0.78	+0.2
1,215,632	+		EFB2_01157	0.78	+0.9
1,215,632	+		EFB2_01157	0.78	+1.1
1,215,632	+		EFB2_01157	0.78	-1.4
1,215,632	+		EFB2_01157	0.78	-1.2
1,215,632	+		EFB2_01157	0.78	-3.4
1,215,632	+		EFB2_01157	0.78	-1.6
1,215,633	-		EFB2_01157	0.78	+1.5
1,215,633	-		EFB2_01157	0.78	+1.0
1,215,633	-		EFB2_01157	0.78	+0.4
1,215,633	-		EFB2_01157	0.78	+4.8
1,215,633	-		EFB2_01157	0.78	-1.6
1,215,633	-		EFB2_01157	0.78	-1.7
1,215,633	-		EFB2_01157	0.78	-2.2
1,215,633	-		EFB2_01157	0.78	-0.1
1,215,633	-		EFB2_01157	0.78	-0.6
1,215,633	-		EFB2_01157	0.78	+1.2
1,215,683	+		EFB2_01157	0.83	+0.6
1,215,683	+		EFB2_01157	0.83	+2.0
1,215,683	+		EFB2_01157	0.83	+0.1
1,215,684	-		EFB2_01157	0.83	+0.8
1,215,684	-		EFB2_01157	0.83	+0.8
1,215,685	+		EFB2_01157	0.83	+0.1
1,215,685	+		EFB2_01157	0.83	-1.0
1,215,685	+		EFB2_01157	0.83	+0.9
1,215,685	+		EFB2_01157	0.83	+0.6
1,215,685	+		EFB2_01157	0.83	-0.4
1,215,686	-		EFB2_01157	0.83	+0.7
1,215,686	-		EFB2_01157	0.83	-1.4
1,215,696	+		EFB2_01157	0.84	+1.2
1,215,697	-		EFB2_01157	0.84	-1.2
1,215,740	+		EFB2_01157	0.88	-0.6
1,215,740	+		EFB2_01157	0.88	+0.8
1,215,740	+		EFB2_01157	0.88	-1.1
1,215,740	+		EFB2_01157	0.88	-1.8
1,215,741	-		EFB2_01157	0.88	+0.1
1,215,741	-		EFB2_01157	0.88	-3.1
1,215,741	-		EFB2_01157	0.88	-1.1
1,215,741	-		EFB2_01157	0.88	+0.8
1,215,741	-		EFB2_01157	0.88	-0.3
1,215,741	-		EFB2_01157	0.88	-0.7
1,215,741	-		EFB2_01157	0.88	-0.8
1,215,746	+		EFB2_01157	0.89	+1.0
1,215,746	+		EFB2_01157	0.89	+2.6
1,215,746	+		EFB2_01157	0.89	-0.5
1,215,746	+		EFB2_01157	0.89	-1.1
1,215,746	+		EFB2_01157	0.89	+0.8
1,215,746	+		EFB2_01157	0.89	+0.9
1,215,746	+		EFB2_01157	0.89	+0.6
1,215,746	+		EFB2_01157	0.89	-1.5
1,215,746	+		EFB2_01157	0.89	+0.6
1,215,746	+		EFB2_01157	0.89	+1.5
1,215,746	+		EFB2_01157	0.89	-0.6
1,215,746	+		EFB2_01157	0.89	+1.4
1,215,746	+		EFB2_01157	0.89	+0.6
1,215,746	+		EFB2_01157	0.89	+0.1
1,215,746	+		EFB2_01157	0.89	+0.9
1,215,746	+		EFB2_01157	0.89	-1.2
1,215,746	+		EFB2_01157	0.89	+1.7
1,215,746	+		EFB2_01157	0.89	-0.4
1,215,746	+		EFB2_01157	0.89	+0.6
1,215,746	+		EFB2_01157	0.89	+1.2
1,215,746	+		EFB2_01157	0.89	+1.3
1,215,746	+		EFB2_01157	0.89	-0.7
1,215,746	+		EFB2_01157	0.89	+0.2
1,215,747	-		EFB2_01157	0.89	-2.2
1,215,747	-		EFB2_01157	0.89	-0.6
1,215,747	-		EFB2_01157	0.89	-2.6
1,215,747	-		EFB2_01157	0.89	+0.3
1,215,747	-		EFB2_01157	0.89	+2.6
1,215,747	-		EFB2_01157	0.89	+0.5
1,215,747	-		EFB2_01157	0.89	+0.2
1,215,747	-		EFB2_01157	0.89	+0.9
1,215,747	-		EFB2_01157	0.89	+0.0
1,215,747	-		EFB2_01157	0.89	-1.2
1,215,747	-		EFB2_01157	0.89	-0.7
1,215,747	-		EFB2_01157	0.89	+0.5
1,215,747	-		EFB2_01157	0.89	+0.0
1,215,747	-		EFB2_01157	0.89	-1.4
1,215,747	-		EFB2_01157	0.89	+0.5
1,215,747	-		EFB2_01157	0.89	-3.3
1,215,747	-		EFB2_01157	0.89	+0.1
1,215,747	-		EFB2_01157	0.89	-1.0
1,215,747	-		EFB2_01157	0.89	-0.1
1,215,761	+				-1.2
1,215,762	-				+0.3
1,215,764	+				-0.8
1,215,764	+				+0.1
1,215,764	+				-0.2
1,215,765	-				+2.1
1,215,782	+				+0.4
1,215,782	+				+0.6
1,215,782	+				+0.7
1,215,782	+				-2.4
1,215,783	-				+0.2
1,215,783	-				+0.8
1,215,783	-				-0.8
1,215,783	-				+1.4
1,215,798	+				+1.5
1,215,809	+				-0.2
1,215,810	-				+0.6
1,215,810	-				+0.4
1,215,810	-				-2.5
1,215,817	-				+0.2
1,215,817	-				+1.3
1,215,863	+				+0.8
1,215,863	+				+1.7
1,215,864	-				+0.7
1,215,864	-				-0.7
1,215,864	-				+0.1
1,215,874	+				+0.3
1,215,874	+				-0.1
1,215,874	+				-1.4
1,215,874	+				+0.9
1,215,878	+				-0.2
1,215,878	+				+0.3
1,215,878	+				+0.9
1,215,878	+				-0.8
1,215,878	+				-2.7
1,215,878	+				-0.8
1,215,878	+				+2.9
1,215,879	-				-0.0
1,215,879	-				+0.5
1,215,879	-				-0.7
1,215,879	-				-0.5
1,215,879	-				+0.4
1,215,879	-				+1.4
1,215,879	-				-1.8
1,215,879	-				-0.4
1,215,879	-				+2.7
1,215,879	-				+0.3
1,215,879	-				-2.0
1,215,903	+				-1.8
1,215,903	+				-0.2
1,215,903	+				-0.2
1,215,903	+				+1.1
1,215,904	-				+0.8
1,215,904	-				+0.0
1,215,904	-				-0.6
1,215,904	-				+0.5
1,215,904	-				-0.2
1,215,904	-				+0.5
1,215,906	+				+0.9
1,215,906	+				-2.0
1,215,906	+				-1.8
1,215,907	-				+1.2
1,215,907	-				-0.9
1,215,907	-				-0.6
1,215,907	-				+0.7
1,215,907	-				+1.2
1,215,907	-				-2.2
1,215,969	+				-1.3
1,215,969	+				-0.1
1,215,970	-				-0.3
1,215,986	+				-0.5
1,215,986	+				-2.7
1,215,987	-				+1.2
1,215,987	-				+0.6
1,215,987	-				+1.1
1,215,987	-				-1.6
1,215,987	-				+0.3
1,215,987	-				-0.4
1,215,987	-				-0.2
1,216,004	-				-1.6
1,216,019	+				-1.5
1,216,019	+				-0.8
1,216,019	+				+0.6
1,216,019	+				+0.7
1,216,019	+				+0.5
1,216,020	-				+0.7
1,216,020	-				-0.6
1,216,020	-				-0.4
1,216,020	-				-1.3
1,216,020	-				+0.8
1,216,020	-				-1.7
1,216,020	-				-0.5
1,216,028	+				-0.0
1,216,028	+				+1.2
1,216,028	+				-0.6
1,216,029	-				-1.7
1,216,029	-				+2.9
1,216,029	-				-1.3
1,216,029	-				-2.4
1,216,029	-				-1.1
1,216,029	-				-0.7
1,216,035	+				-0.2
1,216,036	-				-1.0
1,216,053	+				-1.0
1,216,053	+				+1.7
1,216,053	+				-0.8
1,216,054	-				+1.4
1,216,054	-				-0.0
1,216,054	-				+1.4
1,216,062	+				+0.2
1,216,062	+				-1.0
1,216,063	-				-1.9
1,216,063	-				+0.4
1,216,063	-				+0.4
1,216,063	-				-0.7
1,216,063	-				+0.7
1,216,064	+				+1.2
1,216,092	-				-2.1
1,216,092	-				-0.1
1,216,132	+				-0.2
1,216,133	-				-0.1
1,216,133	-				+0.8
1,216,133	-				+0.8
1,216,133	-				-0.2
1,216,133	-				-1.8
1,216,172	-				+1.3
1,216,172	-				-0.4
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