Strain Fitness in Escherichia fergusonii Becca around EFB2_00944

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
970,404	+		EFB2_00942	0.34	-0.1
970,404	+		EFB2_00942	0.34	-2.9
970,493	+		EFB2_00942	0.46	-0.4
970,493	+		EFB2_00942	0.46	+0.1
970,493	+		EFB2_00942	0.46	-0.4
970,493	+		EFB2_00942	0.46	-0.1
970,494	-		EFB2_00942	0.47	+0.6
970,494	-		EFB2_00942	0.47	-1.2
970,494	-		EFB2_00942	0.47	-1.6
970,494	-		EFB2_00942	0.47	-1.4
970,494	-		EFB2_00942	0.47	+1.6
970,539	+		EFB2_00942	0.53	+0.9
970,539	+		EFB2_00942	0.53	-1.1
970,539	+		EFB2_00942	0.53	-0.0
970,540	-		EFB2_00942	0.53	-3.1
970,540	-		EFB2_00942	0.53	-1.1
970,540	-		EFB2_00942	0.53	-0.6
970,540	-		EFB2_00942	0.53	-0.2
970,540	-		EFB2_00942	0.53	-1.4
970,540	-		EFB2_00942	0.53	+0.4
970,540	-		EFB2_00942	0.53	-0.8
970,611	+		EFB2_00942	0.63	-0.1
970,612	-		EFB2_00942	0.63	-1.7
970,612	-		EFB2_00942	0.63	+0.5
970,612	-		EFB2_00942	0.63	-2.9
970,614	+		EFB2_00942	0.63	-2.0
970,615	-		EFB2_00942	0.63	+1.0
970,615	-		EFB2_00942	0.63	-3.0
970,615	-		EFB2_00942	0.63	-0.6
970,615	-		EFB2_00942	0.63	-1.0
970,615	-		EFB2_00942	0.63	-3.4
970,652	+		EFB2_00942	0.68	-0.1
970,652	+		EFB2_00942	0.68	-1.1
970,653	-		EFB2_00942	0.69	+1.3
970,679	+		EFB2_00942	0.72	-1.0
970,679	+		EFB2_00942	0.72	-1.6
970,679	+		EFB2_00942	0.72	+1.7
970,679	+		EFB2_00942	0.72	+1.6
970,680	-		EFB2_00942	0.72	-0.1
970,680	-		EFB2_00942	0.72	+0.2
970,680	-		EFB2_00942	0.72	-0.7
970,686	+		EFB2_00942	0.73	-1.1
970,687	-		EFB2_00942	0.73	+0.2
970,687	-		EFB2_00942	0.73	+0.8
970,708	+		EFB2_00942	0.76	+1.5
970,709	-		EFB2_00942	0.76	+0.4
970,709	-		EFB2_00942	0.76	-0.2
970,719	+		EFB2_00942	0.78	+0.4
970,719	+		EFB2_00942	0.78	+2.0
970,719	+		EFB2_00942	0.78	+0.4
970,719	+		EFB2_00942	0.78	-0.6
970,719	+		EFB2_00942	0.78	-1.8
970,719	+		EFB2_00942	0.78	+1.0
970,719	+		EFB2_00942	0.78	+0.2
970,719	+		EFB2_00942	0.78	+2.2
970,719	+		EFB2_00942	0.78	+1.3
970,719	+		EFB2_00942	0.78	-1.4
970,719	+		EFB2_00942	0.78	+0.1
970,719	+		EFB2_00942	0.78	-2.1
970,719	+		EFB2_00942	0.78	+1.9
970,719	+		EFB2_00942	0.78	+1.1
970,719	+		EFB2_00942	0.78	-0.9
970,719	+		EFB2_00942	0.78	+0.4
970,719	+		EFB2_00942	0.78	+1.0
970,719	+		EFB2_00942	0.78	-0.5
970,719	+		EFB2_00942	0.78	-0.7
970,719	+		EFB2_00942	0.78	+0.2
970,719	+		EFB2_00942	0.78	-0.5
970,719	+		EFB2_00942	0.78	+1.8
970,719	+		EFB2_00942	0.78	-2.0
970,719	+		EFB2_00942	0.78	+0.7
970,719	+		EFB2_00942	0.78	-0.4
970,719	+		EFB2_00942	0.78	-1.4
970,719	+		EFB2_00942	0.78	+1.2
970,720	-		EFB2_00942	0.78	-0.2
970,720	-		EFB2_00942	0.78	-2.8
970,720	-		EFB2_00942	0.78	+0.9
970,720	-		EFB2_00942	0.78	-0.7
970,720	-		EFB2_00942	0.78	+0.6
970,720	-		EFB2_00942	0.78	+0.3
970,720	-		EFB2_00942	0.78	-0.4
970,720	-		EFB2_00942	0.78	-0.1
970,720	-		EFB2_00942	0.78	-0.2
970,720	-		EFB2_00942	0.78	-0.2
970,720	-		EFB2_00942	0.78	+0.9
970,720	-		EFB2_00942	0.78	-0.8
970,720	-		EFB2_00942	0.78	-3.6
970,720	-		EFB2_00942	0.78	-0.3
970,720	-		EFB2_00942	0.78	-0.5
970,720	-		EFB2_00942	0.78	-0.5
970,720	-		EFB2_00942	0.78	+0.5
970,720	-		EFB2_00942	0.78	+0.2
970,740	+		EFB2_00942	0.81	+1.8
970,740	+		EFB2_00942	0.81	+1.4
970,740	+		EFB2_00942	0.81	+0.6
970,740	+		EFB2_00942	0.81	-4.0
970,740	+		EFB2_00942	0.81	-0.1
970,740	+		EFB2_00942	0.81	+0.4
970,740	+		EFB2_00942	0.81	+0.2
970,740	+		EFB2_00942	0.81	+0.2
970,741	-		EFB2_00942	0.81	-3.9
970,741	-		EFB2_00942	0.81	+0.2
970,741	-		EFB2_00942	0.81	+0.4
970,741	-		EFB2_00942	0.81	-0.3
970,752	+		EFB2_00942	0.82	-2.5
970,777	+		EFB2_00942	0.86	+0.1
970,777	+		EFB2_00942	0.86	-0.9
970,777	+		EFB2_00942	0.86	+3.4
970,777	+		EFB2_00942	0.86	-0.6
970,777	+		EFB2_00942	0.86	+1.4
970,777	+		EFB2_00942	0.86	-0.3
970,777	+		EFB2_00942	0.86	+1.5
970,777	+		EFB2_00942	0.86	-1.6
970,777	+		EFB2_00942	0.86	+0.8
970,777	+		EFB2_00942	0.86	+0.3
970,778	-		EFB2_00942	0.86	+1.5
970,778	-		EFB2_00942	0.86	-0.2
970,778	-		EFB2_00942	0.86	+2.0
970,778	-		EFB2_00942	0.86	-0.1
970,778	-		EFB2_00942	0.86	-0.6
970,778	-		EFB2_00942	0.86	-1.9
970,778	-		EFB2_00942	0.86	+1.8
970,778	-		EFB2_00942	0.86	+0.3
970,778	-		EFB2_00942	0.86	-1.0
970,778	-		EFB2_00942	0.86	+0.1
970,781	+		EFB2_00942	0.86	-2.7
970,781	+		EFB2_00942	0.86	-0.1
970,847	+				-1.1
970,847	+				-0.2
970,847	+				+2.8
970,848	-				-1.0
970,848	-				-0.8
970,856	+				-0.6
970,856	+				-0.6
970,856	+				-0.7
970,856	+				-1.1
970,856	+				+0.7
970,856	+				-0.7
970,856	+				+1.4
970,856	+				+0.2
970,856	+				-1.4
970,856	+				+0.8
970,856	+				-0.0
970,856	+				-0.8
970,856	+				-2.1
970,856	+				+0.3
970,856	+				-0.5
970,856	+				-0.2
970,857	-				-1.2
970,857	-				+0.8
970,857	-				-0.8
970,857	-				+1.3
970,857	-				+0.6
970,857	-				-1.8
970,857	-				+1.1
970,857	-				+0.1
970,857	-				-3.7
970,857	-				-3.3
970,857	-				-2.6
970,857	-				+0.5
970,857	-				+0.2
970,857	-				-0.3
970,857	-				+0.8
970,857	-				-2.6
970,857	-				-0.6
970,857	-				-0.5
970,857	-				+0.8
970,857	-				+0.7
970,857	-				-1.2
970,857	-				+0.9
970,857	-				-0.3
970,876	+				-0.4
970,877	-				-1.4
970,877	-				+0.3
970,973	+		EFB2_00943	0.29	+2.1
970,973	+		EFB2_00943	0.29	-0.4
970,973	+		EFB2_00943	0.29	+0.4
970,973	+		EFB2_00943	0.29	+0.9
970,973	+		EFB2_00943	0.29	+1.2
970,973	+		EFB2_00943	0.29	-0.0
970,973	+		EFB2_00943	0.29	+2.8
970,974	-		EFB2_00943	0.29	+1.0
970,974	-		EFB2_00943	0.29	-0.8
970,974	-		EFB2_00943	0.29	-1.3
970,974	-		EFB2_00943	0.29	+0.1
970,974	-		EFB2_00943	0.29	+0.0
970,974	-		EFB2_00943	0.29	-0.7
970,974	-		EFB2_00943	0.29	-1.5
970,974	-		EFB2_00943	0.29	+0.4
970,974	-		EFB2_00943	0.29	-0.5
970,974	-		EFB2_00943	0.29	-0.3
970,974	-		EFB2_00943	0.29	+3.2
970,974	-		EFB2_00943	0.29	-1.3
970,974	-		EFB2_00943	0.29	+0.1
970,974	-		EFB2_00943	0.29	-1.6
970,994	+		EFB2_00943	0.35	-0.2
970,994	+		EFB2_00943	0.35	+0.1
970,994	+		EFB2_00943	0.35	-1.6
970,994	+		EFB2_00943	0.35	-0.4
970,994	+		EFB2_00943	0.35	+0.4
970,995	-		EFB2_00943	0.36	+0.5
970,995	-		EFB2_00943	0.36	-2.1
970,995	-		EFB2_00943	0.36	+0.1
971,012	+		EFB2_00943	0.41	+0.8
971,012	+		EFB2_00943	0.41	-0.3
971,012	+		EFB2_00943	0.41	+1.4
971,012	+		EFB2_00943	0.41	-0.8
971,012	+		EFB2_00943	0.41	+0.4
971,012	+		EFB2_00943	0.41	+0.5
971,012	+		EFB2_00943	0.41	+0.7
971,015	+		EFB2_00943	0.42	+0.6
971,061	+		EFB2_00943	0.56	+1.1
971,061	+		EFB2_00943	0.56	+1.8
971,135	+		EFB2_00943	0.79	-0.1
971,135	+		EFB2_00943	0.79	+0.4
971,135	+		EFB2_00943	0.79	+1.7
971,135	+		EFB2_00943	0.79	+1.8
971,135	+		EFB2_00943	0.79	-3.2
971,135	+		EFB2_00943	0.79	+0.9
971,135	+		EFB2_00943	0.79	-1.2
971,135	+		EFB2_00943	0.79	-2.2
971,135	+		EFB2_00943	0.79	-1.7
971,135	+		EFB2_00943	0.79	-0.1
971,135	+		EFB2_00943	0.79	-0.3
971,136	-		EFB2_00943	0.79	+0.2
971,136	-		EFB2_00943	0.79	+0.8
971,136	-		EFB2_00943	0.79	-0.6
971,167	+		EFB2_00943	0.88	+1.1
971,167	+		EFB2_00943	0.88	-0.3
971,167	+		EFB2_00943	0.88	+0.2
971,167	+		EFB2_00943	0.88	-0.0
971,167	+		EFB2_00943	0.88	+0.7
971,167	+		EFB2_00943	0.88	-1.8
971,167	+		EFB2_00943	0.88	+0.4
971,168	-		EFB2_00943	0.89	+1.6
971,168	-		EFB2_00943	0.89	-0.7
971,168	-		EFB2_00943	0.89	+1.3
971,168	-		EFB2_00943	0.89	-1.5
971,168	-		EFB2_00943	0.89	-2.1
971,203	-				-1.4
971,203	-				-1.4
971,203	-				-0.8
971,203	-				-0.5
971,203	-				-2.4
971,203	-				-1.1
971,203	-				-0.4
971,212	+				+1.3
971,213	-				-1.3
971,213	-				-0.6
971,248	+				+1.7
971,248	+				-0.5
971,249	-				+0.7
971,249	-				+1.3
971,249	-				-3.8
971,249	-				+1.6
971,249	-				-0.4
971,254	+				-0.8
971,254	+				+1.1
971,255	-				+0.1
971,263	+				-0.6
971,263	+				-0.4
971,283	+				-0.1
971,387	+				-3.3
971,387	+				-1.9
971,387	+				-2.8
971,387	+				-1.1
971,387	+				-1.4
971,387	+				-3.2
971,387	+				-0.7
971,387	+				-1.7
971,387	+				+0.8
971,387	+				+1.0
971,387	+				+0.3
971,387	+				-0.2
971,387	+				-0.0
971,387	+				+0.1
971,387	+				-1.2
971,387	+				-3.1
971,387	+				-1.4
971,387	+				-1.6
971,387	+				-0.4
971,387	+				+0.6
971,387	+				-0.1
971,387	+				+0.6
971,387	+				-2.0
971,387	+				-2.1
971,387	+				+0.9
971,387	+				+0.0
971,388	-				+0.7
971,388	-				+1.0
971,388	-				-1.4
971,388	-				-2.3
971,388	-				+1.8
971,388	-				+0.9
971,388	-				-3.7
971,388	-				-0.1
971,388	-				+0.6
971,388	-				+1.6
971,388	-				+0.7
971,388	-				+2.0
971,388	-				+2.8
971,388	-				+2.8
971,388	-				+0.7
971,388	-				-2.2
971,388	-				+0.4
971,388	-				-1.6
971,388	-				+0.8
971,388	-				+0.7
971,388	-				-0.5
971,388	-				-0.4
971,388	-				-1.0
971,388	-				+1.1
971,388	-				+0.8
971,451	+				+0.7
971,451	+				-1.8
971,451	+				+1.0
971,452	-				+2.1
971,452	-				-0.5
971,452	-				-1.7
971,452	-				+0.3
971,452	-				-2.0
971,559	+		EFB2_00944	0.24	+0.2
971,559	+		EFB2_00944	0.24	+0.7
971,559	+		EFB2_00944	0.24	-0.7
971,559	+		EFB2_00944	0.24	+0.7
971,559	+		EFB2_00944	0.24	+0.1
971,559	+		EFB2_00944	0.24	-0.6
971,559	+		EFB2_00944	0.24	+1.5
971,559	+		EFB2_00944	0.24	+0.4
971,559	+		EFB2_00944	0.24	-1.6
971,559	+		EFB2_00944	0.24	+1.7
971,559	+		EFB2_00944	0.24	-0.9
971,559	+		EFB2_00944	0.24	-0.6
971,559	+		EFB2_00944	0.24	+0.8
971,559	+		EFB2_00944	0.24	-0.4
971,559	+		EFB2_00944	0.24	-1.6
971,559	+		EFB2_00944	0.24	-0.1
971,559	+		EFB2_00944	0.24	-0.1
971,559	+		EFB2_00944	0.24	-0.5
971,559	+		EFB2_00944	0.24	+0.1
971,559	+		EFB2_00944	0.24	-1.4
971,559	+		EFB2_00944	0.24	+0.3
971,560	-		EFB2_00944	0.24	+1.2
971,560	-		EFB2_00944	0.24	-1.8
971,560	-		EFB2_00944	0.24	+0.9
971,560	-		EFB2_00944	0.24	-1.1
971,560	-		EFB2_00944	0.24	-0.2
971,560	-		EFB2_00944	0.24	+2.0
971,560	-		EFB2_00944	0.24	+0.2
971,560	-		EFB2_00944	0.24	-1.4
971,560	-		EFB2_00944	0.24	-2.0
971,560	-		EFB2_00944	0.24	+1.1
971,560	-		EFB2_00944	0.24	-0.1
971,560	-		EFB2_00944	0.24	+0.8
971,560	-		EFB2_00944	0.24	-2.1
971,560	-		EFB2_00944	0.24	-0.8
971,560	-		EFB2_00944	0.24	-0.2
971,560	-		EFB2_00944	0.24	-0.3
971,560	-		EFB2_00944	0.24	-1.4
971,560	-		EFB2_00944	0.24	+0.6
971,561	+		EFB2_00944	0.24	-0.2
971,561	+		EFB2_00944	0.24	+0.3
971,561	+		EFB2_00944	0.24	-0.1
971,562	-		EFB2_00944	0.24	+1.1
971,562	-		EFB2_00944	0.24	-0.6
971,562	-		EFB2_00944	0.24	-1.9
971,562	-		EFB2_00944	0.24	-1.2
971,567	+		EFB2_00944	0.25	+1.1
971,574	+		EFB2_00944	0.26	-1.0
971,574	+		EFB2_00944	0.26	-2.7
971,574	+		EFB2_00944	0.26	-0.4
971,574	+		EFB2_00944	0.26	+0.0
971,574	+		EFB2_00944	0.26	-0.2
971,575	-		EFB2_00944	0.26	-0.2
971,575	-		EFB2_00944	0.26	+0.4
971,626	+		EFB2_00944	0.33	-0.6
971,626	+		EFB2_00944	0.33	-1.8
971,626	+		EFB2_00944	0.33	+0.8
971,626	+		EFB2_00944	0.33	+2.2
971,626	+		EFB2_00944	0.33	-0.4
971,626	+		EFB2_00944	0.33	+0.8
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