Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EFB2_00558 and EFB2_00559 are separated by 11 nucleotides EFB2_00559 and EFB2_00560 are separated by 398 nucleotides
EFB2_00558: EFB2_00558 - Multidrug export protein AcrF, at 559,673 to 562,777
_00558
EFB2_00559: EFB2_00559 - Multidrug export protein AcrE, at 562,789 to 563,946
_00559
EFB2_00560: EFB2_00560 - HTH-type transcriptional regulator AcrR, at 564,345 to 565,007
_00560
Position (kb) 562
563
564 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 561.798 kb on + strand, within EFB2_00558 at 561.798 kb on + strand, within EFB2_00558 at 561.798 kb on + strand, within EFB2_00558 at 561.799 kb on - strand, within EFB2_00558 at 561.799 kb on - strand, within EFB2_00558 at 561.799 kb on - strand, within EFB2_00558 at 561.799 kb on - strand, within EFB2_00558 at 561.799 kb on - strand, within EFB2_00558 at 561.799 kb on - strand, within EFB2_00558 at 561.799 kb on - strand, within EFB2_00558 at 561.799 kb on - strand, within EFB2_00558 at 561.804 kb on + strand, within EFB2_00558 at 561.805 kb on - strand, within EFB2_00558 at 561.805 kb on - strand, within EFB2_00558 at 561.839 kb on + strand, within EFB2_00558 at 561.839 kb on + strand, within EFB2_00558 at 561.839 kb on + strand, within EFB2_00558 at 561.840 kb on - strand, within EFB2_00558 at 561.840 kb on - strand, within EFB2_00558 at 561.904 kb on + strand, within EFB2_00558 at 561.905 kb on - strand, within EFB2_00558 at 561.937 kb on + strand, within EFB2_00558 at 561.938 kb on - strand, within EFB2_00558 at 561.938 kb on - strand, within EFB2_00558 at 561.938 kb on - strand, within EFB2_00558 at 561.938 kb on - strand, within EFB2_00558 at 561.938 kb on - strand, within EFB2_00558 at 561.952 kb on + strand, within EFB2_00558 at 561.952 kb on + strand, within EFB2_00558 at 561.953 kb on - strand, within EFB2_00558 at 561.953 kb on - strand, within EFB2_00558 at 561.953 kb on - strand, within EFB2_00558 at 561.953 kb on - strand, within EFB2_00558 at 561.954 kb on + strand, within EFB2_00558 at 561.955 kb on - strand, within EFB2_00558 at 561.955 kb on - strand, within EFB2_00558 at 561.998 kb on + strand, within EFB2_00558 at 561.998 kb on + strand, within EFB2_00558 at 561.998 kb on + strand, within EFB2_00558 at 561.998 kb on + strand, within EFB2_00558 at 561.999 kb on - strand, within EFB2_00558 at 561.999 kb on - strand, within EFB2_00558 at 561.999 kb on - strand, within EFB2_00558 at 562.019 kb on + strand, within EFB2_00558 at 562.075 kb on + strand, within EFB2_00558 at 562.076 kb on - strand, within EFB2_00558 at 562.076 kb on - strand, within EFB2_00558 at 562.076 kb on - strand, within EFB2_00558 at 562.076 kb on - strand, within EFB2_00558 at 562.076 kb on - strand, within EFB2_00558 at 562.076 kb on - strand, within EFB2_00558 at 562.103 kb on + strand, within EFB2_00558 at 562.104 kb on - strand, within EFB2_00558 at 562.151 kb on + strand, within EFB2_00558 at 562.151 kb on + strand, within EFB2_00558 at 562.152 kb on - strand, within EFB2_00558 at 562.152 kb on - strand, within EFB2_00558 at 562.152 kb on - strand, within EFB2_00558 at 562.152 kb on - strand, within EFB2_00558 at 562.166 kb on - strand, within EFB2_00558 at 562.166 kb on - strand, within EFB2_00558 at 562.189 kb on + strand, within EFB2_00558 at 562.189 kb on + strand, within EFB2_00558 at 562.189 kb on + strand, within EFB2_00558 at 562.189 kb on + strand, within EFB2_00558 at 562.189 kb on + strand, within EFB2_00558 at 562.190 kb on - strand, within EFB2_00558 at 562.190 kb on - strand, within EFB2_00558 at 562.190 kb on - strand, within EFB2_00558 at 562.190 kb on - strand, within EFB2_00558 at 562.190 kb on - strand, within EFB2_00558 at 562.190 kb on - strand, within EFB2_00558 at 562.190 kb on - strand, within EFB2_00558 at 562.190 kb on - strand, within EFB2_00558 at 562.191 kb on + strand, within EFB2_00558 at 562.191 kb on + strand, within EFB2_00558 at 562.191 kb on + strand, within EFB2_00558 at 562.191 kb on + strand, within EFB2_00558 at 562.191 kb on + strand, within EFB2_00558 at 562.191 kb on + strand, within EFB2_00558 at 562.192 kb on - strand, within EFB2_00558 at 562.192 kb on - strand, within EFB2_00558 at 562.192 kb on - strand, within EFB2_00558 at 562.199 kb on + strand, within EFB2_00558 at 562.200 kb on - strand, within EFB2_00558 at 562.200 kb on - strand, within EFB2_00558 at 562.222 kb on + strand, within EFB2_00558 at 562.222 kb on + strand, within EFB2_00558 at 562.222 kb on + strand, within EFB2_00558 at 562.222 kb on + strand, within EFB2_00558 at 562.222 kb on + strand, within EFB2_00558 at 562.222 kb on + strand, within EFB2_00558 at 562.222 kb on + strand, within EFB2_00558 at 562.222 kb on + strand, within EFB2_00558 at 562.223 kb on - strand, within EFB2_00558 at 562.223 kb on - strand, within EFB2_00558 at 562.223 kb on - strand, within EFB2_00558 at 562.223 kb on - strand, within EFB2_00558 at 562.233 kb on + strand, within EFB2_00558 at 562.233 kb on + strand, within EFB2_00558 at 562.233 kb on + strand, within EFB2_00558 at 562.234 kb on - strand, within EFB2_00558 at 562.234 kb on - strand, within EFB2_00558 at 562.234 kb on - strand, within EFB2_00558 at 562.234 kb on - strand, within EFB2_00558 at 562.234 kb on - strand, within EFB2_00558 at 562.253 kb on + strand, within EFB2_00558 at 562.253 kb on + strand, within EFB2_00558 at 562.253 kb on + strand, within EFB2_00558 at 562.253 kb on + strand, within EFB2_00558 at 562.253 kb on + strand, within EFB2_00558 at 562.254 kb on - strand, within EFB2_00558 at 562.254 kb on - strand, within EFB2_00558 at 562.254 kb on - strand, within EFB2_00558 at 562.254 kb on - strand, within EFB2_00558 at 562.254 kb on - strand, within EFB2_00558 at 562.254 kb on - strand, within EFB2_00558 at 562.254 kb on - strand, within EFB2_00558 at 562.280 kb on - strand, within EFB2_00558 at 562.280 kb on - strand, within EFB2_00558 at 562.285 kb on + strand, within EFB2_00558 at 562.285 kb on + strand, within EFB2_00558 at 562.285 kb on + strand, within EFB2_00558 at 562.285 kb on + strand, within EFB2_00558 at 562.286 kb on - strand, within EFB2_00558 at 562.286 kb on - strand, within EFB2_00558 at 562.286 kb on - strand, within EFB2_00558 at 562.286 kb on - strand, within EFB2_00558 at 562.286 kb on - strand, within EFB2_00558 at 562.297 kb on + strand, within EFB2_00558 at 562.308 kb on + strand, within EFB2_00558 at 562.308 kb on + strand, within EFB2_00558 at 562.308 kb on + strand, within EFB2_00558 at 562.308 kb on + strand, within EFB2_00558 at 562.308 kb on + strand, within EFB2_00558 at 562.308 kb on + strand, within EFB2_00558 at 562.308 kb on + strand, within EFB2_00558 at 562.308 kb on + strand, within EFB2_00558 at 562.308 kb on + strand, within EFB2_00558 at 562.308 kb on + strand, within EFB2_00558 at 562.308 kb on + strand, within EFB2_00558 at 562.308 kb on + strand, within EFB2_00558 at 562.308 kb on + strand, within EFB2_00558 at 562.308 kb on + strand, within EFB2_00558 at 562.308 kb on + strand, within EFB2_00558 at 562.309 kb on - strand, within EFB2_00558 at 562.309 kb on - strand, within EFB2_00558 at 562.309 kb on - strand, within EFB2_00558 at 562.309 kb on - strand, within EFB2_00558 at 562.309 kb on - strand, within EFB2_00558 at 562.309 kb on - strand, within EFB2_00558 at 562.309 kb on - strand, within EFB2_00558 at 562.309 kb on - strand, within EFB2_00558 at 562.309 kb on - strand, within EFB2_00558 at 562.309 kb on - strand, within EFB2_00558 at 562.309 kb on - strand, within EFB2_00558 at 562.318 kb on + strand, within EFB2_00558 at 562.319 kb on - strand, within EFB2_00558 at 562.319 kb on - strand, within EFB2_00558 at 562.319 kb on - strand, within EFB2_00558 at 562.319 kb on - strand, within EFB2_00558 at 562.319 kb on - strand, within EFB2_00558 at 562.371 kb on + strand, within EFB2_00558 at 562.371 kb on + strand, within EFB2_00558 at 562.371 kb on + strand, within EFB2_00558 at 562.372 kb on - strand, within EFB2_00558 at 562.372 kb on - strand, within EFB2_00558 at 562.372 kb on - strand, within EFB2_00558 at 562.372 kb on - strand, within EFB2_00558 at 562.372 kb on - strand, within EFB2_00558 at 562.372 kb on - strand, within EFB2_00558 at 562.378 kb on + strand, within EFB2_00558 at 562.463 kb on + strand, within EFB2_00558 at 562.463 kb on + strand, within EFB2_00558 at 562.464 kb on - strand, within EFB2_00558 at 562.464 kb on - strand, within EFB2_00558 at 562.464 kb on - strand, within EFB2_00558 at 562.464 kb on - strand, within EFB2_00558 at 562.464 kb on - strand, within EFB2_00558 at 562.464 kb on - strand, within EFB2_00558 at 562.464 kb on - strand, within EFB2_00558 at 562.464 kb on - strand, within EFB2_00558 at 562.501 kb on + strand at 562.501 kb on + strand at 562.501 kb on + strand at 562.502 kb on - strand at 562.502 kb on - strand at 562.507 kb on + strand at 562.507 kb on + strand at 562.507 kb on + strand at 562.507 kb on + strand at 562.507 kb on + strand at 562.507 kb on + strand at 562.507 kb on + strand at 562.507 kb on + strand at 562.508 kb on - strand at 562.508 kb on - strand at 562.508 kb on - strand at 562.508 kb on - strand at 562.508 kb on - strand at 562.508 kb on - strand at 562.508 kb on - strand at 562.508 kb on - strand at 562.508 kb on - strand at 562.508 kb on - strand at 562.508 kb on - strand at 562.508 kb on - strand at 562.508 kb on - strand at 562.508 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.547 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.549 kb on - strand at 562.573 kb on + strand at 562.573 kb on + strand at 562.573 kb on + strand at 562.574 kb on - strand at 562.574 kb on - strand at 562.574 kb on - strand at 562.600 kb on + strand at 562.600 kb on + strand at 562.600 kb on + strand at 562.600 kb on + strand at 562.600 kb on + strand at 562.601 kb on - strand at 562.601 kb on - strand at 562.632 kb on + strand at 562.633 kb on - strand at 562.694 kb on + strand at 562.695 kb on - strand at 562.695 kb on - strand at 562.695 kb on - strand at 562.695 kb on - strand at 562.695 kb on - strand at 562.695 kb on - strand at 562.726 kb on + strand at 562.726 kb on + strand at 562.726 kb on + strand at 562.748 kb on + strand at 562.748 kb on + strand at 562.748 kb on + strand at 562.748 kb on + strand at 562.749 kb on - strand at 562.749 kb on - strand at 562.790 kb on + strand at 562.790 kb on + strand at 562.790 kb on + strand at 562.790 kb on + strand at 562.791 kb on - strand at 562.803 kb on + strand at 562.803 kb on + strand at 562.803 kb on + strand at 562.804 kb on - strand at 562.804 kb on - strand at 562.914 kb on + strand, within EFB2_00559 at 562.915 kb on - strand, within EFB2_00559 at 562.915 kb on - strand, within EFB2_00559 at 562.965 kb on + strand, within EFB2_00559 at 562.965 kb on + strand, within EFB2_00559 at 562.965 kb on + strand, within EFB2_00559 at 562.965 kb on + strand, within EFB2_00559 at 562.966 kb on - strand, within EFB2_00559 at 562.966 kb on - strand, within EFB2_00559 at 562.966 kb on - strand, within EFB2_00559 at 563.029 kb on - strand, within EFB2_00559 at 563.094 kb on + strand, within EFB2_00559 at 563.094 kb on + strand, within EFB2_00559 at 563.094 kb on + strand, within EFB2_00559 at 563.094 kb on + strand, within EFB2_00559 at 563.094 kb on + strand, within EFB2_00559 at 563.094 kb on + strand, within EFB2_00559 at 563.094 kb on + strand, within EFB2_00559 at 563.094 kb on + strand, within EFB2_00559 at 563.094 kb on + strand, within EFB2_00559 at 563.094 kb on + strand, within EFB2_00559 at 563.094 kb on + strand, within EFB2_00559 at 563.095 kb on - strand, within EFB2_00559 at 563.095 kb on - strand, within EFB2_00559 at 563.095 kb on - strand, within EFB2_00559 at 563.095 kb on - strand, within EFB2_00559 at 563.095 kb on - strand, within EFB2_00559 at 563.122 kb on + strand, within EFB2_00559 at 563.122 kb on + strand, within EFB2_00559 at 563.122 kb on + strand, within EFB2_00559 at 563.122 kb on + strand, within EFB2_00559 at 563.122 kb on + strand, within EFB2_00559 at 563.122 kb on + strand, within EFB2_00559 at 563.122 kb on + strand, within EFB2_00559 at 563.122 kb on + strand, within EFB2_00559 at 563.123 kb on - strand, within EFB2_00559 at 563.123 kb on - strand, within EFB2_00559 at 563.123 kb on - strand, within EFB2_00559 at 563.123 kb on - strand, within EFB2_00559 at 563.123 kb on - strand, within EFB2_00559 at 563.123 kb on - strand, within EFB2_00559 at 563.123 kb on - strand, within EFB2_00559 at 563.123 kb on - strand, within EFB2_00559 at 563.123 kb on - strand, within EFB2_00559 at 563.123 kb on - strand, within EFB2_00559 at 563.123 kb on - strand, within EFB2_00559 at 563.123 kb on - strand, within EFB2_00559 at 563.124 kb on - strand, within EFB2_00559 at 563.175 kb on + strand, within EFB2_00559 at 563.175 kb on + strand, within EFB2_00559 at 563.189 kb on + strand, within EFB2_00559 at 563.189 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.218 kb on + strand, within EFB2_00559 at 563.219 kb on - strand, within EFB2_00559 at 563.219 kb on - strand, within EFB2_00559 at 563.219 kb on - strand, within EFB2_00559 at 563.219 kb on - strand, within EFB2_00559 at 563.219 kb on - strand, within EFB2_00559 at 563.219 kb on - strand, within EFB2_00559 at 563.219 kb on - strand, within EFB2_00559 at 563.219 kb on - strand, within EFB2_00559 at 563.219 kb on - strand, within EFB2_00559 at 563.219 kb on - strand, within EFB2_00559 at 563.219 kb on - strand, within EFB2_00559 at 563.219 kb on - strand, within EFB2_00559 at 563.260 kb on + strand, within EFB2_00559 at 563.260 kb on + strand, within EFB2_00559 at 563.280 kb on + strand, within EFB2_00559 at 563.281 kb on - strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.312 kb on + strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.313 kb on - strand, within EFB2_00559 at 563.316 kb on + strand, within EFB2_00559 at 563.316 kb on + strand, within EFB2_00559 at 563.316 kb on + strand, within EFB2_00559 at 563.316 kb on + strand, within EFB2_00559 at 563.316 kb on + strand, within EFB2_00559 at 563.316 kb on + strand, within EFB2_00559 at 563.316 kb on + strand, within EFB2_00559 at 563.316 kb on + strand, within EFB2_00559 at 563.316 kb on + strand, within EFB2_00559 at 563.316 kb on + strand, within EFB2_00559 at 563.316 kb on + strand, within EFB2_00559 at 563.317 kb on - strand, within EFB2_00559 at 563.317 kb on - strand, within EFB2_00559 at 563.317 kb on - strand, within EFB2_00559 at 563.317 kb on - strand, within EFB2_00559 at 563.317 kb on - strand, within EFB2_00559 at 563.317 kb on - strand, within EFB2_00559 at 563.317 kb on - strand, within EFB2_00559 at 563.317 kb on - strand, within EFB2_00559 at 563.317 kb on - strand, within EFB2_00559 at 563.317 kb on - strand, within EFB2_00559 at 563.361 kb on + strand, within EFB2_00559 at 563.361 kb on + strand, within EFB2_00559 at 563.361 kb on + strand, within EFB2_00559 at 563.362 kb on - strand, within EFB2_00559 at 563.362 kb on - strand, within EFB2_00559 at 563.400 kb on + strand, within EFB2_00559 at 563.400 kb on + strand, within EFB2_00559 at 563.401 kb on - strand, within EFB2_00559 at 563.409 kb on + strand, within EFB2_00559 at 563.413 kb on - strand, within EFB2_00559 at 563.413 kb on - strand, within EFB2_00559 at 563.413 kb on - strand, within EFB2_00559 at 563.430 kb on + strand, within EFB2_00559 at 563.430 kb on + strand, within EFB2_00559 at 563.431 kb on - strand, within EFB2_00559 at 563.431 kb on - strand, within EFB2_00559 at 563.431 kb on - strand, within EFB2_00559 at 563.431 kb on - strand, within EFB2_00559 at 563.431 kb on - strand, within EFB2_00559 at 563.431 kb on - strand, within EFB2_00559 at 563.431 kb on - strand, within EFB2_00559 at 563.431 kb on - strand, within EFB2_00559 at 563.431 kb on - strand, within EFB2_00559 at 563.432 kb on + strand, within EFB2_00559 at 563.432 kb on + strand, within EFB2_00559 at 563.432 kb on + strand, within EFB2_00559 at 563.432 kb on + strand, within EFB2_00559 at 563.432 kb on + strand, within EFB2_00559 at 563.433 kb on - strand, within EFB2_00559 at 563.433 kb on - strand, within EFB2_00559 at 563.433 kb on - strand, within EFB2_00559 at 563.433 kb on - strand, within EFB2_00559 at 563.433 kb on - strand, within EFB2_00559 at 563.433 kb on - strand, within EFB2_00559 at 563.433 kb on - strand, within EFB2_00559 at 563.433 kb on - strand, within EFB2_00559 at 563.522 kb on + strand, within EFB2_00559 at 563.522 kb on + strand, within EFB2_00559 at 563.522 kb on + strand, within EFB2_00559 at 563.522 kb on + strand, within EFB2_00559 at 563.523 kb on - strand, within EFB2_00559 at 563.523 kb on - strand, within EFB2_00559 at 563.523 kb on - strand, within EFB2_00559 at 563.540 kb on + strand, within EFB2_00559 at 563.540 kb on + strand, within EFB2_00559 at 563.540 kb on + strand, within EFB2_00559 at 563.540 kb on + strand, within EFB2_00559 at 563.540 kb on + strand, within EFB2_00559 at 563.540 kb on + strand, within EFB2_00559 at 563.540 kb on + strand, within EFB2_00559 at 563.540 kb on + strand, within EFB2_00559 at 563.540 kb on + strand, within EFB2_00559 at 563.540 kb on + strand, within EFB2_00559 at 563.540 kb on + strand, within EFB2_00559 at 563.540 kb on + strand, within EFB2_00559 at 563.540 kb on + strand, within EFB2_00559 at 563.540 kb on + strand, within EFB2_00559 at 563.541 kb on - strand, within EFB2_00559 at 563.541 kb on - strand, within EFB2_00559 at 563.541 kb on - strand, within EFB2_00559 at 563.541 kb on - strand, within EFB2_00559 at 563.541 kb on - strand, within EFB2_00559 at 563.541 kb on - strand, within EFB2_00559 at 563.541 kb on - strand, within EFB2_00559 at 563.541 kb on - strand, within EFB2_00559 at 563.541 kb on - strand, within EFB2_00559 at 563.541 kb on - strand, within EFB2_00559 at 563.541 kb on - strand, within EFB2_00559 at 563.541 kb on - strand, within EFB2_00559 at 563.541 kb on - strand, within EFB2_00559 at 563.541 kb on - strand, within EFB2_00559 at 563.565 kb on - strand, within EFB2_00559 at 563.572 kb on + strand, within EFB2_00559 at 563.573 kb on - strand, within EFB2_00559 at 563.614 kb on + strand, within EFB2_00559 at 563.615 kb on - strand, within EFB2_00559 at 563.636 kb on + strand, within EFB2_00559 at 563.636 kb on + strand, within EFB2_00559 at 563.636 kb on + strand, within EFB2_00559 at 563.636 kb on + strand, within EFB2_00559 at 563.636 kb on + strand, within EFB2_00559 at 563.636 kb on + strand, within EFB2_00559 at 563.636 kb on + strand, within EFB2_00559 at 563.636 kb on + strand, within EFB2_00559 at 563.636 kb on + strand, within EFB2_00559 at 563.636 kb on + strand, within EFB2_00559 at 563.637 kb on - strand, within EFB2_00559 at 563.637 kb on - strand, within EFB2_00559 at 563.648 kb on + strand, within EFB2_00559 at 563.648 kb on + strand, within EFB2_00559 at 563.648 kb on + strand, within EFB2_00559 at 563.648 kb on + strand, within EFB2_00559 at 563.649 kb on - strand, within EFB2_00559 at 563.649 kb on - strand, within EFB2_00559 at 563.649 kb on - strand, within EFB2_00559 at 563.649 kb on - strand, within EFB2_00559 at 563.669 kb on + strand, within EFB2_00559 at 563.670 kb on - strand, within EFB2_00559 at 563.670 kb on - strand, within EFB2_00559 at 563.722 kb on + strand, within EFB2_00559 at 563.722 kb on + strand, within EFB2_00559 at 563.723 kb on - strand, within EFB2_00559 at 563.757 kb on + strand, within EFB2_00559 at 563.757 kb on + strand, within EFB2_00559 at 563.757 kb on + strand, within EFB2_00559 at 563.758 kb on - strand, within EFB2_00559 at 563.758 kb on - strand, within EFB2_00559 at 563.758 kb on - strand, within EFB2_00559 at 563.758 kb on - strand, within EFB2_00559 at 563.758 kb on - strand, within EFB2_00559 at 563.758 kb on - strand, within EFB2_00559 at 563.758 kb on - strand, within EFB2_00559 at 563.762 kb on + strand, within EFB2_00559 at 563.763 kb on - strand, within EFB2_00559 at 563.763 kb on - strand, within EFB2_00559 at 563.782 kb on + strand, within EFB2_00559 at 563.782 kb on + strand, within EFB2_00559 at 563.782 kb on + strand, within EFB2_00559 at 563.783 kb on - strand, within EFB2_00559 at 563.783 kb on - strand, within EFB2_00559 at 563.793 kb on + strand, within EFB2_00559 at 563.793 kb on + strand, within EFB2_00559 at 563.793 kb on + strand, within EFB2_00559 at 563.794 kb on - strand, within EFB2_00559 at 563.820 kb on + strand, within EFB2_00559 at 563.820 kb on + strand, within EFB2_00559 at 563.821 kb on - strand, within EFB2_00559 at 563.821 kb on - strand, within EFB2_00559 at 563.821 kb on - strand, within EFB2_00559 at 563.821 kb on - strand, within EFB2_00559 at 563.874 kb on + strand at 563.875 kb on - strand at 563.908 kb on - strand at 563.947 kb on + strand at 563.948 kb on - strand at 563.950 kb on + strand at 563.951 kb on - strand at 563.951 kb on - strand at 563.951 kb on - strand at 564.034 kb on + strand at 564.064 kb on - strand at 564.064 kb on - strand at 564.068 kb on - strand at 564.178 kb on + strand at 564.182 kb on + strand at 564.182 kb on + strand at 564.183 kb on - strand at 564.183 kb on - strand at 564.217 kb on + strand at 564.265 kb on - strand at 564.283 kb on - strand at 564.321 kb on + strand at 564.322 kb on - strand at 564.341 kb on - strand at 564.341 kb on - strand at 564.430 kb on + strand, within EFB2_00560 at 564.431 kb on - strand, within EFB2_00560 at 564.467 kb on + strand, within EFB2_00560 at 564.467 kb on + strand, within EFB2_00560 at 564.468 kb on - strand, within EFB2_00560 at 564.473 kb on + strand, within EFB2_00560 at 564.473 kb on + strand, within EFB2_00560 at 564.485 kb on + strand, within EFB2_00560 at 564.486 kb on - strand, within EFB2_00560 at 564.486 kb on - strand, within EFB2_00560 at 564.489 kb on + strand, within EFB2_00560 at 564.489 kb on + strand, within EFB2_00560 at 564.489 kb on + strand, within EFB2_00560 at 564.489 kb on + strand, within EFB2_00560 at 564.489 kb on + strand, within EFB2_00560 at 564.490 kb on - strand, within EFB2_00560 at 564.490 kb on - strand, within EFB2_00560 at 564.490 kb on - strand, within EFB2_00560 at 564.490 kb on - strand, within EFB2_00560 at 564.521 kb on + strand, within EFB2_00560 at 564.521 kb on + strand, within EFB2_00560 at 564.522 kb on - strand, within EFB2_00560 at 564.559 kb on + strand, within EFB2_00560 at 564.586 kb on + strand, within EFB2_00560 at 564.639 kb on + strand, within EFB2_00560 at 564.639 kb on + strand, within EFB2_00560 at 564.639 kb on + strand, within EFB2_00560 at 564.639 kb on + strand, within EFB2_00560 at 564.640 kb on - strand, within EFB2_00560 at 564.640 kb on - strand, within EFB2_00560 at 564.641 kb on + strand, within EFB2_00560 at 564.641 kb on + strand, within EFB2_00560 at 564.641 kb on + strand, within EFB2_00560 at 564.641 kb on + strand, within EFB2_00560 at 564.642 kb on - strand, within EFB2_00560 at 564.642 kb on - strand, within EFB2_00560 at 564.642 kb on - strand, within EFB2_00560 at 564.682 kb on + strand, within EFB2_00560 at 564.684 kb on + strand, within EFB2_00560 at 564.684 kb on + strand, within EFB2_00560 at 564.685 kb on - strand, within EFB2_00560 at 564.772 kb on + strand, within EFB2_00560 at 564.772 kb on + strand, within EFB2_00560 at 564.773 kb on - strand, within EFB2_00560 at 564.810 kb on - strand, within EFB2_00560 at 564.837 kb on - strand, within EFB2_00560 at 564.904 kb on - strand, within EFB2_00560 at 564.905 kb on + strand, within EFB2_00560 at 564.905 kb on + strand, within EFB2_00560 at 564.905 kb on + strand, within EFB2_00560 at 564.935 kb on - strand, within EFB2_00560 at 564.935 kb on - strand, within EFB2_00560 at 564.935 kb on - strand, within EFB2_00560
Per-strain Table
Position Strand Gene LocusTag Fraction phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) remove 561,798 + EFB2_00558 0.68 -1.2 561,798 + EFB2_00558 0.68 -4.0 561,798 + EFB2_00558 0.68 +1.4 561,799 - EFB2_00558 0.68 -1.4 561,799 - EFB2_00558 0.68 +0.2 561,799 - EFB2_00558 0.68 -3.0 561,799 - EFB2_00558 0.68 -1.2 561,799 - EFB2_00558 0.68 +0.5 561,799 - EFB2_00558 0.68 +1.1 561,799 - EFB2_00558 0.68 +0.7 561,799 - EFB2_00558 0.68 -1.0 561,804 + EFB2_00558 0.69 -0.4 561,805 - EFB2_00558 0.69 -2.4 561,805 - EFB2_00558 0.69 -0.7 561,839 + EFB2_00558 0.70 -0.7 561,839 + EFB2_00558 0.70 -1.7 561,839 + EFB2_00558 0.70 +0.2 561,840 - EFB2_00558 0.70 +0.9 561,840 - EFB2_00558 0.70 -0.6 561,904 + EFB2_00558 0.72 +0.8 561,905 - EFB2_00558 0.72 -2.2 561,937 + EFB2_00558 0.73 +1.5 561,938 - EFB2_00558 0.73 +0.5 561,938 - EFB2_00558 0.73 +1.4 561,938 - EFB2_00558 0.73 -0.5 561,938 - EFB2_00558 0.73 +2.1 561,938 - EFB2_00558 0.73 -0.0 561,952 + EFB2_00558 0.73 -0.5 561,952 + EFB2_00558 0.73 -0.4 561,953 - EFB2_00558 0.73 -0.6 561,953 - EFB2_00558 0.73 -1.0 561,953 - EFB2_00558 0.73 -2.3 561,953 - EFB2_00558 0.73 -2.7 561,954 + EFB2_00558 0.73 +0.4 561,955 - EFB2_00558 0.73 -0.0 561,955 - EFB2_00558 0.73 +1.4 561,998 + EFB2_00558 0.75 +1.6 561,998 + EFB2_00558 0.75 +1.4 561,998 + EFB2_00558 0.75 -0.7 561,998 + EFB2_00558 0.75 +0.9 561,999 - EFB2_00558 0.75 +0.1 561,999 - EFB2_00558 0.75 +1.5 561,999 - EFB2_00558 0.75 +0.6 562,019 + EFB2_00558 0.76 -1.2 562,075 + EFB2_00558 0.77 +0.0 562,076 - EFB2_00558 0.77 +2.2 562,076 - EFB2_00558 0.77 -1.0 562,076 - EFB2_00558 0.77 -0.2 562,076 - EFB2_00558 0.77 +3.1 562,076 - EFB2_00558 0.77 +0.9 562,076 - EFB2_00558 0.77 +2.1 562,103 + EFB2_00558 0.78 +1.8 562,104 - EFB2_00558 0.78 +0.2 562,151 + EFB2_00558 0.80 -0.0 562,151 + EFB2_00558 0.80 -0.8 562,152 - EFB2_00558 0.80 -1.2 562,152 - EFB2_00558 0.80 -0.1 562,152 - EFB2_00558 0.80 +3.8 562,152 - EFB2_00558 0.80 +0.1 562,166 - EFB2_00558 0.80 -0.8 562,166 - EFB2_00558 0.80 +0.8 562,189 + EFB2_00558 0.81 +0.1 562,189 + EFB2_00558 0.81 -1.1 562,189 + EFB2_00558 0.81 +1.5 562,189 + EFB2_00558 0.81 -0.6 562,189 + EFB2_00558 0.81 -2.4 562,190 - EFB2_00558 0.81 -2.4 562,190 - EFB2_00558 0.81 +0.1 562,190 - EFB2_00558 0.81 -1.0 562,190 - EFB2_00558 0.81 +0.7 562,190 - EFB2_00558 0.81 +0.8 562,190 - EFB2_00558 0.81 +0.7 562,190 - EFB2_00558 0.81 +0.9 562,190 - EFB2_00558 0.81 -2.2 562,191 + EFB2_00558 0.81 +0.9 562,191 + EFB2_00558 0.81 +0.4 562,191 + EFB2_00558 0.81 -2.5 562,191 + EFB2_00558 0.81 -0.5 562,191 + EFB2_00558 0.81 -1.4 562,191 + EFB2_00558 0.81 -2.2 562,192 - EFB2_00558 0.81 -0.4 562,192 - EFB2_00558 0.81 -2.8 562,192 - EFB2_00558 0.81 -0.3 562,199 + EFB2_00558 0.81 -1.8 562,200 - EFB2_00558 0.81 +0.3 562,200 - EFB2_00558 0.81 -2.4 562,222 + EFB2_00558 0.82 +0.8 562,222 + EFB2_00558 0.82 -3.0 562,222 + EFB2_00558 0.82 -0.3 562,222 + EFB2_00558 0.82 -1.1 562,222 + EFB2_00558 0.82 -0.5 562,222 + EFB2_00558 0.82 +2.1 562,222 + EFB2_00558 0.82 -0.1 562,222 + EFB2_00558 0.82 +0.0 562,223 - EFB2_00558 0.82 -1.0 562,223 - EFB2_00558 0.82 +0.5 562,223 - EFB2_00558 0.82 +0.7 562,223 - EFB2_00558 0.82 -0.3 562,233 + EFB2_00558 0.82 +1.4 562,233 + EFB2_00558 0.82 +1.1 562,233 + EFB2_00558 0.82 +0.2 562,234 - EFB2_00558 0.82 -2.0 562,234 - EFB2_00558 0.82 -2.1 562,234 - EFB2_00558 0.82 -0.3 562,234 - EFB2_00558 0.82 -1.4 562,234 - EFB2_00558 0.82 -0.2 562,253 + EFB2_00558 0.83 +2.0 562,253 + EFB2_00558 0.83 +1.2 562,253 + EFB2_00558 0.83 -3.1 562,253 + EFB2_00558 0.83 -0.3 562,253 + EFB2_00558 0.83 +1.1 562,254 - EFB2_00558 0.83 -0.2 562,254 - EFB2_00558 0.83 -0.5 562,254 - EFB2_00558 0.83 -0.3 562,254 - EFB2_00558 0.83 -0.4 562,254 - EFB2_00558 0.83 -0.1 562,254 - EFB2_00558 0.83 -2.8 562,254 - EFB2_00558 0.83 -1.5 562,280 - EFB2_00558 0.84 -0.2 562,280 - EFB2_00558 0.84 -1.9 562,285 + EFB2_00558 0.84 +0.8 562,285 + EFB2_00558 0.84 +0.2 562,285 + EFB2_00558 0.84 -2.0 562,285 + EFB2_00558 0.84 -0.7 562,286 - EFB2_00558 0.84 +0.9 562,286 - EFB2_00558 0.84 +0.2 562,286 - EFB2_00558 0.84 -1.6 562,286 - EFB2_00558 0.84 -0.2 562,286 - EFB2_00558 0.84 -1.5 562,297 + EFB2_00558 0.85 +1.0 562,308 + EFB2_00558 0.85 +0.2 562,308 + EFB2_00558 0.85 -0.5 562,308 + EFB2_00558 0.85 +0.3 562,308 + EFB2_00558 0.85 +0.2 562,308 + EFB2_00558 0.85 -1.9 562,308 + EFB2_00558 0.85 +0.4 562,308 + EFB2_00558 0.85 +1.6 562,308 + EFB2_00558 0.85 +1.0 562,308 + EFB2_00558 0.85 +0.2 562,308 + EFB2_00558 0.85 +0.8 562,308 + EFB2_00558 0.85 -2.1 562,308 + EFB2_00558 0.85 -1.9 562,308 + EFB2_00558 0.85 -0.5 562,308 + EFB2_00558 0.85 +0.0 562,308 + EFB2_00558 0.85 +0.1 562,309 - EFB2_00558 0.85 +0.2 562,309 - EFB2_00558 0.85 +2.3 562,309 - EFB2_00558 0.85 -0.5 562,309 - EFB2_00558 0.85 +1.0 562,309 - EFB2_00558 0.85 -0.3 562,309 - EFB2_00558 0.85 +4.1 562,309 - EFB2_00558 0.85 +1.3 562,309 - EFB2_00558 0.85 +0.6 562,309 - EFB2_00558 0.85 +0.7 562,309 - EFB2_00558 0.85 -2.8 562,309 - EFB2_00558 0.85 -1.0 562,318 + EFB2_00558 0.85 -0.1 562,319 - EFB2_00558 0.85 -2.6 562,319 - EFB2_00558 0.85 +0.8 562,319 - EFB2_00558 0.85 -0.9 562,319 - 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EFB2_00560 0.22 +0.2 564,521 + EFB2_00560 0.27 +0.1 564,521 + EFB2_00560 0.27 -1.0 564,522 - EFB2_00560 0.27 -0.6 564,559 + EFB2_00560 0.32 -1.1 564,586 + EFB2_00560 0.36 -1.3 564,639 + EFB2_00560 0.44 +0.4 564,639 + EFB2_00560 0.44 +0.8 564,639 + EFB2_00560 0.44 -0.5 564,639 + EFB2_00560 0.44 +2.1 564,640 - EFB2_00560 0.44 -1.3 564,640 - EFB2_00560 0.44 +1.0 564,641 + EFB2_00560 0.45 +0.5 564,641 + EFB2_00560 0.45 +0.6 564,641 + EFB2_00560 0.45 +1.0 564,641 + EFB2_00560 0.45 +0.7 564,642 - EFB2_00560 0.45 +0.4 564,642 - EFB2_00560 0.45 -0.2 564,642 - EFB2_00560 0.45 -1.4 564,682 + EFB2_00560 0.51 -0.2 564,684 + EFB2_00560 0.51 +0.3 564,684 + EFB2_00560 0.51 +0.2 564,685 - EFB2_00560 0.51 -2.7 564,772 + EFB2_00560 0.64 +0.5 564,772 + EFB2_00560 0.64 +0.3 564,773 - EFB2_00560 0.65 +2.3 564,810 - EFB2_00560 0.70 +1.2 564,837 - EFB2_00560 0.74 -0.2 564,904 - EFB2_00560 0.84 +0.3 564,905 + EFB2_00560 0.84 +0.3 564,905 + EFB2_00560 0.84 +0.8 564,905 + EFB2_00560 0.84 -0.5 564,935 - EFB2_00560 0.89 -0.9 564,935 - EFB2_00560 0.89 -0.3 564,935 - EFB2_00560 0.89 +0.5
Or see this region's nucleotide sequence