Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_03008

Experiment: Ethanolamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_03006 and MPMX26_03007 are separated by 296 nucleotidesMPMX26_03007 and MPMX26_03008 are separated by 111 nucleotidesMPMX26_03008 and MPMX26_03009 are separated by 103 nucleotidesMPMX26_03009 and MPMX26_03010 are separated by 144 nucleotides MPMX26_03006: MPMX26_03006 - 4-hydroxy-tetrahydrodipicolinate reductase, at 3,120,088 to 3,120,909 _03006 MPMX26_03007: MPMX26_03007 - hypothetical protein, at 3,121,206 to 3,121,565 _03007 MPMX26_03008: MPMX26_03008 - Chaperone protein DnaJ, at 3,121,677 to 3,122,789 _03008 MPMX26_03009: MPMX26_03009 - hypothetical protein, at 3,122,893 to 3,123,270 _03009 MPMX26_03010: MPMX26_03010 - Cobalt-zinc-cadmium resistance protein CzcA, at 3,123,415 to 3,126,543 _03010 Position (kb) 3121 3122 3123Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3121.200 kb on + strandat 3121.245 kb on - strand, within MPMX26_03007at 3121.338 kb on - strand, within MPMX26_03007at 3121.350 kb on - strand, within MPMX26_03007at 3121.352 kb on + strand, within MPMX26_03007at 3121.360 kb on - strand, within MPMX26_03007at 3121.381 kb on - strand, within MPMX26_03007at 3121.462 kb on - strand, within MPMX26_03007at 3121.462 kb on - strand, within MPMX26_03007at 3121.463 kb on - strand, within MPMX26_03007at 3121.473 kb on + strand, within MPMX26_03007at 3121.476 kb on - strand, within MPMX26_03007at 3121.486 kb on - strand, within MPMX26_03007at 3121.491 kb on - strand, within MPMX26_03007at 3121.496 kb on - strand, within MPMX26_03007at 3121.508 kb on - strand, within MPMX26_03007at 3121.539 kb on - strandat 3121.568 kb on - strandat 3121.568 kb on - strandat 3121.574 kb on - strandat 3121.603 kb on - strandat 3121.635 kb on - strandat 3121.640 kb on - strandat 3121.651 kb on - strandat 3121.686 kb on - strandat 3121.688 kb on - strandat 3121.723 kb on - strandat 3121.723 kb on - strandat 3121.728 kb on - strandat 3121.731 kb on - strandat 3121.736 kb on - strandat 3121.736 kb on - strandat 3121.736 kb on - strandat 3121.736 kb on - strandat 3121.736 kb on - strandat 3121.736 kb on - strandat 3121.736 kb on - strandat 3121.747 kb on - strandat 3121.790 kb on - strand, within MPMX26_03008at 3121.931 kb on - strand, within MPMX26_03008at 3121.931 kb on - strand, within MPMX26_03008at 3121.931 kb on - strand, within MPMX26_03008at 3122.000 kb on - strand, within MPMX26_03008at 3122.000 kb on - strand, within MPMX26_03008at 3122.000 kb on - strand, within MPMX26_03008at 3122.126 kb on - strand, within MPMX26_03008at 3122.126 kb on - strand, within MPMX26_03008at 3122.126 kb on - strand, within MPMX26_03008at 3122.177 kb on - strand, within MPMX26_03008at 3122.803 kb on - strandat 3122.983 kb on + strand, within MPMX26_03009at 3122.991 kb on - strand, within MPMX26_03009at 3122.991 kb on - strand, within MPMX26_03009at 3122.991 kb on - strand, within MPMX26_03009at 3122.991 kb on - strand, within MPMX26_03009at 3122.991 kb on - strand, within MPMX26_03009at 3122.991 kb on - strand, within MPMX26_03009at 3122.991 kb on - strand, within MPMX26_03009at 3122.991 kb on - strand, within MPMX26_03009at 3122.991 kb on - strand, within MPMX26_03009at 3122.996 kb on - strand, within MPMX26_03009at 3122.996 kb on - strand, within MPMX26_03009at 3123.001 kb on - strand, within MPMX26_03009at 3123.006 kb on - strand, within MPMX26_03009at 3123.006 kb on - strand, within MPMX26_03009at 3123.049 kb on + strand, within MPMX26_03009at 3123.050 kb on - strand, within MPMX26_03009at 3123.050 kb on - strand, within MPMX26_03009at 3123.057 kb on - strand, within MPMX26_03009at 3123.092 kb on - strand, within MPMX26_03009at 3123.125 kb on - strand, within MPMX26_03009at 3123.137 kb on - strand, within MPMX26_03009at 3123.147 kb on - strand, within MPMX26_03009at 3123.147 kb on - strand, within MPMX26_03009at 3123.199 kb on - strand, within MPMX26_03009at 3123.247 kb on + strandat 3123.247 kb on - strandat 3123.257 kb on - strandat 3123.257 kb on - strandat 3123.257 kb on - strandat 3123.262 kb on - strandat 3123.274 kb on - strandat 3123.339 kb on - strandat 3123.361 kb on - strandat 3123.429 kb on + strandat 3123.429 kb on + strandat 3123.437 kb on - strandat 3123.437 kb on - strandat 3123.437 kb on - strandat 3123.441 kb on - strandat 3123.453 kb on - strandat 3123.453 kb on - strandat 3123.478 kb on - strandat 3123.500 kb on - strandat 3123.543 kb on - strandat 3123.561 kb on - strandat 3123.561 kb on - strandat 3123.561 kb on - strandat 3123.561 kb on - strandat 3123.652 kb on - strandat 3123.653 kb on - strandat 3123.671 kb on - strandat 3123.672 kb on + strandat 3123.676 kb on - strandat 3123.680 kb on - strandat 3123.680 kb on - strandat 3123.713 kb on - strandat 3123.713 kb on - strandat 3123.713 kb on - strandat 3123.718 kb on - strandat 3123.741 kb on - strand, within MPMX26_03010at 3123.766 kb on + strand, within MPMX26_03010at 3123.778 kb on - strand, within MPMX26_03010at 3123.780 kb on + strand, within MPMX26_03010

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanolamine (N)
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3,121,200 + +0.3
3,121,245 - MPMX26_03007 0.11 +0.1
3,121,338 - MPMX26_03007 0.37 -3.0
3,121,350 - MPMX26_03007 0.40 -0.8
3,121,352 + MPMX26_03007 0.41 -1.2
3,121,360 - MPMX26_03007 0.43 -0.8
3,121,381 - MPMX26_03007 0.49 -0.5
3,121,462 - MPMX26_03007 0.71 +0.5
3,121,462 - MPMX26_03007 0.71 -0.6
3,121,463 - MPMX26_03007 0.71 +0.8
3,121,473 + MPMX26_03007 0.74 -1.9
3,121,476 - MPMX26_03007 0.75 -0.8
3,121,486 - MPMX26_03007 0.78 +1.7
3,121,491 - MPMX26_03007 0.79 +0.2
3,121,496 - MPMX26_03007 0.81 -0.5
3,121,508 - MPMX26_03007 0.84 -1.9
3,121,539 - -0.5
3,121,568 - -1.1
3,121,568 - -0.8
3,121,574 - -0.5
3,121,603 - +0.5
3,121,635 - +0.2
3,121,640 - -0.0
3,121,651 - -0.2
3,121,686 - -1.9
3,121,688 - -1.3
3,121,723 - -2.5
3,121,723 - +0.9
3,121,728 - -1.4
3,121,731 - -3.0
3,121,736 - -1.5
3,121,736 - -1.0
3,121,736 - -1.6
3,121,736 - -0.6
3,121,736 - -1.1
3,121,736 - -1.8
3,121,736 - -1.1
3,121,747 - -0.8
3,121,790 - MPMX26_03008 0.10 -3.4
3,121,931 - MPMX26_03008 0.23 -0.5
3,121,931 - MPMX26_03008 0.23 -1.6
3,121,931 - MPMX26_03008 0.23 -1.1
3,122,000 - MPMX26_03008 0.29 -3.3
3,122,000 - MPMX26_03008 0.29 -2.9
3,122,000 - MPMX26_03008 0.29 -1.3
3,122,126 - MPMX26_03008 0.40 -1.9
3,122,126 - MPMX26_03008 0.40 -2.7
3,122,126 - MPMX26_03008 0.40 -0.5
3,122,177 - MPMX26_03008 0.45 -2.3
3,122,803 - -1.8
3,122,983 + MPMX26_03009 0.24 -1.5
3,122,991 - MPMX26_03009 0.26 +1.4
3,122,991 - MPMX26_03009 0.26 -0.0
3,122,991 - MPMX26_03009 0.26 +0.9
3,122,991 - MPMX26_03009 0.26 +1.4
3,122,991 - MPMX26_03009 0.26 +0.1
3,122,991 - MPMX26_03009 0.26 -0.2
3,122,991 - MPMX26_03009 0.26 +0.9
3,122,991 - MPMX26_03009 0.26 +0.1
3,122,991 - MPMX26_03009 0.26 +0.6
3,122,996 - MPMX26_03009 0.27 +0.3
3,122,996 - MPMX26_03009 0.27 +0.3
3,123,001 - MPMX26_03009 0.29 +0.5
3,123,006 - MPMX26_03009 0.30 +0.4
3,123,006 - MPMX26_03009 0.30 -0.5
3,123,049 + MPMX26_03009 0.41 -0.7
3,123,050 - MPMX26_03009 0.42 -0.5
3,123,050 - MPMX26_03009 0.42 +0.3
3,123,057 - MPMX26_03009 0.43 -2.3
3,123,092 - MPMX26_03009 0.53 -1.4
3,123,125 - MPMX26_03009 0.61 +0.2
3,123,137 - MPMX26_03009 0.65 +0.8
3,123,147 - MPMX26_03009 0.67 +0.1
3,123,147 - MPMX26_03009 0.67 +0.5
3,123,199 - MPMX26_03009 0.81 +0.7
3,123,247 + +1.3
3,123,247 - +0.7
3,123,257 - +0.1
3,123,257 - -1.3
3,123,257 - -1.6
3,123,262 - -0.9
3,123,274 - -2.3
3,123,339 - +0.8
3,123,361 - +0.8
3,123,429 + +1.9
3,123,429 + +0.1
3,123,437 - -0.2
3,123,437 - +0.9
3,123,437 - -0.9
3,123,441 - +0.7
3,123,453 - +0.6
3,123,453 - +0.4
3,123,478 - -0.3
3,123,500 - -0.1
3,123,543 - +0.1
3,123,561 - -1.0
3,123,561 - -0.1
3,123,561 - -1.1
3,123,561 - +0.7
3,123,652 - +1.1
3,123,653 - +0.3
3,123,671 - -0.3
3,123,672 + -0.9
3,123,676 - +0.1
3,123,680 - -0.5
3,123,680 - +0.3
3,123,713 - -0.6
3,123,713 - -1.6
3,123,713 - -0.7
3,123,718 - -3.3
3,123,741 - MPMX26_03010 0.10 -0.1
3,123,766 + MPMX26_03010 0.11 -0.9
3,123,778 - MPMX26_03010 0.12 -0.9
3,123,780 + MPMX26_03010 0.12 -0.1

Or see this region's nucleotide sequence