Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02863

Experiment: Ethanolamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02861 and MPMX26_02862 are separated by 108 nucleotidesMPMX26_02862 and MPMX26_02863 are separated by 75 nucleotidesMPMX26_02863 and MPMX26_02864 are separated by 9 nucleotides MPMX26_02861: MPMX26_02861 - Prophage integrase IntS, at 2,951,018 to 2,952,214 _02861 MPMX26_02862: MPMX26_02862 - hypothetical protein, at 2,952,323 to 2,952,916 _02862 MPMX26_02863: MPMX26_02863 - RNA polymerase-associated protein RapA, at 2,952,992 to 2,956,195 _02863 MPMX26_02864: MPMX26_02864 - hypothetical protein, at 2,956,205 to 2,957,644 _02864 Position (kb) 2952 2953 2954 2955 2956 2957Strain fitness (log2 ratio) -2 -1 0 1 2at 2952.006 kb on + strand, within MPMX26_02861at 2952.023 kb on - strand, within MPMX26_02861at 2952.079 kb on + strand, within MPMX26_02861at 2952.091 kb on + strand, within MPMX26_02861at 2952.091 kb on + strand, within MPMX26_02861at 2952.110 kb on + strandat 2952.199 kb on + strandat 2952.199 kb on + strandat 2952.357 kb on + strandat 2952.367 kb on + strandat 2952.386 kb on + strand, within MPMX26_02862at 2952.398 kb on + strand, within MPMX26_02862at 2952.398 kb on + strand, within MPMX26_02862at 2952.400 kb on + strand, within MPMX26_02862at 2952.408 kb on + strand, within MPMX26_02862at 2952.595 kb on + strand, within MPMX26_02862at 2952.609 kb on + strand, within MPMX26_02862at 2952.609 kb on + strand, within MPMX26_02862at 2952.609 kb on + strand, within MPMX26_02862at 2952.639 kb on + strand, within MPMX26_02862at 2952.657 kb on + strand, within MPMX26_02862at 2952.658 kb on + strand, within MPMX26_02862at 2952.665 kb on + strand, within MPMX26_02862at 2952.679 kb on + strand, within MPMX26_02862at 2952.692 kb on + strand, within MPMX26_02862at 2952.723 kb on + strand, within MPMX26_02862at 2952.728 kb on + strand, within MPMX26_02862at 2952.728 kb on + strand, within MPMX26_02862at 2952.730 kb on + strand, within MPMX26_02862at 2953.034 kb on - strandat 2953.058 kb on - strandat 2953.058 kb on - strandat 2953.169 kb on - strandat 2953.169 kb on - strandat 2953.429 kb on - strand, within MPMX26_02863at 2953.560 kb on - strand, within MPMX26_02863at 2953.565 kb on - strand, within MPMX26_02863at 2953.631 kb on - strand, within MPMX26_02863at 2953.655 kb on - strand, within MPMX26_02863at 2953.655 kb on - strand, within MPMX26_02863at 2953.655 kb on - strand, within MPMX26_02863at 2953.756 kb on - strand, within MPMX26_02863at 2953.926 kb on - strand, within MPMX26_02863at 2953.943 kb on - strand, within MPMX26_02863at 2953.943 kb on - strand, within MPMX26_02863at 2954.150 kb on - strand, within MPMX26_02863at 2954.216 kb on - strand, within MPMX26_02863at 2954.216 kb on - strand, within MPMX26_02863at 2954.216 kb on - strand, within MPMX26_02863at 2954.363 kb on - strand, within MPMX26_02863at 2954.363 kb on - strand, within MPMX26_02863at 2954.363 kb on - strand, within MPMX26_02863at 2954.495 kb on - strand, within MPMX26_02863at 2954.495 kb on - strand, within MPMX26_02863at 2954.593 kb on - strand, within MPMX26_02863at 2954.627 kb on - strand, within MPMX26_02863at 2954.627 kb on - strand, within MPMX26_02863at 2954.627 kb on - strand, within MPMX26_02863at 2954.732 kb on + strand, within MPMX26_02863at 2954.771 kb on - strand, within MPMX26_02863at 2954.781 kb on - strand, within MPMX26_02863at 2954.799 kb on - strand, within MPMX26_02863at 2954.896 kb on - strand, within MPMX26_02863at 2954.950 kb on - strand, within MPMX26_02863at 2954.966 kb on - strand, within MPMX26_02863at 2955.023 kb on - strand, within MPMX26_02863at 2955.125 kb on - strand, within MPMX26_02863at 2955.125 kb on - strand, within MPMX26_02863at 2955.135 kb on - strand, within MPMX26_02863at 2955.292 kb on - strand, within MPMX26_02863at 2955.298 kb on - strand, within MPMX26_02863at 2955.298 kb on - strand, within MPMX26_02863at 2955.300 kb on - strand, within MPMX26_02863at 2955.304 kb on - strand, within MPMX26_02863at 2955.321 kb on - strand, within MPMX26_02863at 2955.361 kb on - strand, within MPMX26_02863at 2955.368 kb on - strand, within MPMX26_02863at 2955.368 kb on - strand, within MPMX26_02863at 2955.368 kb on - strand, within MPMX26_02863at 2955.453 kb on - strand, within MPMX26_02863at 2955.463 kb on - strand, within MPMX26_02863at 2955.479 kb on - strand, within MPMX26_02863at 2955.479 kb on - strand, within MPMX26_02863at 2955.479 kb on - strand, within MPMX26_02863at 2955.606 kb on - strand, within MPMX26_02863at 2955.614 kb on - strand, within MPMX26_02863at 2955.646 kb on - strand, within MPMX26_02863at 2955.745 kb on - strand, within MPMX26_02863at 2955.745 kb on - strand, within MPMX26_02863at 2955.811 kb on - strand, within MPMX26_02863at 2955.835 kb on - strand, within MPMX26_02863at 2955.880 kb on - strandat 2955.999 kb on - strandat 2956.001 kb on - strandat 2956.015 kb on - strandat 2956.094 kb on - strandat 2956.094 kb on - strandat 2956.099 kb on - strandat 2956.110 kb on - strandat 2956.128 kb on - strandat 2956.128 kb on - strandat 2956.235 kb on - strandat 2956.327 kb on - strandat 2956.367 kb on - strand, within MPMX26_02864at 2956.367 kb on - strand, within MPMX26_02864at 2956.489 kb on - strand, within MPMX26_02864at 2956.507 kb on - strand, within MPMX26_02864at 2956.563 kb on - strand, within MPMX26_02864at 2956.684 kb on - strand, within MPMX26_02864at 2956.698 kb on - strand, within MPMX26_02864at 2956.744 kb on - strand, within MPMX26_02864at 2956.744 kb on - strand, within MPMX26_02864at 2956.772 kb on - strand, within MPMX26_02864at 2956.780 kb on - strand, within MPMX26_02864at 2956.801 kb on - strand, within MPMX26_02864at 2956.847 kb on - strand, within MPMX26_02864at 2957.039 kb on - strand, within MPMX26_02864at 2957.039 kb on - strand, within MPMX26_02864at 2957.048 kb on - strand, within MPMX26_02864at 2957.048 kb on - strand, within MPMX26_02864at 2957.095 kb on - strand, within MPMX26_02864at 2957.103 kb on - strand, within MPMX26_02864at 2957.113 kb on - strand, within MPMX26_02864

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanolamine (N)
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2,952,006 + MPMX26_02861 0.83 -0.9
2,952,023 - MPMX26_02861 0.84 -1.1
2,952,079 + MPMX26_02861 0.89 +1.0
2,952,091 + MPMX26_02861 0.90 +0.2
2,952,091 + MPMX26_02861 0.90 +0.4
2,952,110 + +0.4
2,952,199 + -0.1
2,952,199 + +0.3
2,952,357 + -0.2
2,952,367 + -0.3
2,952,386 + MPMX26_02862 0.11 -0.4
2,952,398 + MPMX26_02862 0.13 +0.6
2,952,398 + MPMX26_02862 0.13 -0.3
2,952,400 + MPMX26_02862 0.13 +0.2
2,952,408 + MPMX26_02862 0.14 +0.2
2,952,595 + MPMX26_02862 0.46 +0.0
2,952,609 + MPMX26_02862 0.48 -0.4
2,952,609 + MPMX26_02862 0.48 +0.3
2,952,609 + MPMX26_02862 0.48 +0.1
2,952,639 + MPMX26_02862 0.53 +0.0
2,952,657 + MPMX26_02862 0.56 +0.8
2,952,658 + MPMX26_02862 0.56 +0.3
2,952,665 + MPMX26_02862 0.58 -0.8
2,952,679 + MPMX26_02862 0.60 +0.9
2,952,692 + MPMX26_02862 0.62 -0.5
2,952,723 + MPMX26_02862 0.67 +0.3
2,952,728 + MPMX26_02862 0.68 +0.8
2,952,728 + MPMX26_02862 0.68 -1.1
2,952,730 + MPMX26_02862 0.69 +1.3
2,953,034 - +1.0
2,953,058 - +0.4
2,953,058 - +0.7
2,953,169 - -0.1
2,953,169 - +0.9
2,953,429 - MPMX26_02863 0.14 +0.4
2,953,560 - MPMX26_02863 0.18 -0.0
2,953,565 - MPMX26_02863 0.18 +0.3
2,953,631 - MPMX26_02863 0.20 -0.1
2,953,655 - MPMX26_02863 0.21 -0.6
2,953,655 - MPMX26_02863 0.21 +0.1
2,953,655 - MPMX26_02863 0.21 -0.3
2,953,756 - MPMX26_02863 0.24 -0.7
2,953,926 - MPMX26_02863 0.29 -0.2
2,953,943 - MPMX26_02863 0.30 +0.1
2,953,943 - MPMX26_02863 0.30 +0.3
2,954,150 - MPMX26_02863 0.36 -1.3
2,954,216 - MPMX26_02863 0.38 -0.2
2,954,216 - MPMX26_02863 0.38 +0.0
2,954,216 - MPMX26_02863 0.38 +0.5
2,954,363 - MPMX26_02863 0.43 -0.4
2,954,363 - MPMX26_02863 0.43 -2.0
2,954,363 - MPMX26_02863 0.43 +1.1
2,954,495 - MPMX26_02863 0.47 -1.1
2,954,495 - MPMX26_02863 0.47 +0.3
2,954,593 - MPMX26_02863 0.50 +1.1
2,954,627 - MPMX26_02863 0.51 +0.8
2,954,627 - MPMX26_02863 0.51 +0.8
2,954,627 - MPMX26_02863 0.51 +1.5
2,954,732 + MPMX26_02863 0.54 -1.1
2,954,771 - MPMX26_02863 0.56 +0.6
2,954,781 - MPMX26_02863 0.56 -1.5
2,954,799 - MPMX26_02863 0.56 +0.3
2,954,896 - MPMX26_02863 0.59 -0.3
2,954,950 - MPMX26_02863 0.61 -0.5
2,954,966 - MPMX26_02863 0.62 -0.5
2,955,023 - MPMX26_02863 0.63 -1.3
2,955,125 - MPMX26_02863 0.67 +1.5
2,955,125 - MPMX26_02863 0.67 +1.1
2,955,135 - MPMX26_02863 0.67 -0.4
2,955,292 - MPMX26_02863 0.72 +0.9
2,955,298 - MPMX26_02863 0.72 -1.9
2,955,298 - MPMX26_02863 0.72 -1.1
2,955,300 - MPMX26_02863 0.72 -0.3
2,955,304 - MPMX26_02863 0.72 -0.5
2,955,321 - MPMX26_02863 0.73 +1.2
2,955,361 - MPMX26_02863 0.74 -0.3
2,955,368 - MPMX26_02863 0.74 +0.0
2,955,368 - MPMX26_02863 0.74 +0.9
2,955,368 - MPMX26_02863 0.74 -0.3
2,955,453 - MPMX26_02863 0.77 -0.5
2,955,463 - MPMX26_02863 0.77 -0.7
2,955,479 - MPMX26_02863 0.78 -1.6
2,955,479 - MPMX26_02863 0.78 -0.2
2,955,479 - MPMX26_02863 0.78 +0.2
2,955,606 - MPMX26_02863 0.82 +1.9
2,955,614 - MPMX26_02863 0.82 +0.4
2,955,646 - MPMX26_02863 0.83 -0.5
2,955,745 - MPMX26_02863 0.86 +0.3
2,955,745 - MPMX26_02863 0.86 -1.3
2,955,811 - MPMX26_02863 0.88 -1.1
2,955,835 - MPMX26_02863 0.89 -0.4
2,955,880 - -0.2
2,955,999 - -0.8
2,956,001 - +0.1
2,956,015 - -0.6
2,956,094 - +0.1
2,956,094 - +0.1
2,956,099 - -0.2
2,956,110 - +0.7
2,956,128 - -0.7
2,956,128 - -1.1
2,956,235 - +1.1
2,956,327 - +0.6
2,956,367 - MPMX26_02864 0.11 +1.1
2,956,367 - MPMX26_02864 0.11 +1.7
2,956,489 - MPMX26_02864 0.20 +0.6
2,956,507 - MPMX26_02864 0.21 +0.7
2,956,563 - MPMX26_02864 0.25 -0.3
2,956,684 - MPMX26_02864 0.33 +0.4
2,956,698 - MPMX26_02864 0.34 +0.9
2,956,744 - MPMX26_02864 0.37 +0.7
2,956,744 - MPMX26_02864 0.37 -1.6
2,956,772 - MPMX26_02864 0.39 +0.3
2,956,780 - MPMX26_02864 0.40 -0.5
2,956,801 - MPMX26_02864 0.41 +0.9
2,956,847 - MPMX26_02864 0.45 -0.8
2,957,039 - MPMX26_02864 0.58 +0.1
2,957,039 - MPMX26_02864 0.58 +0.4
2,957,048 - MPMX26_02864 0.59 -0.2
2,957,048 - MPMX26_02864 0.59 -0.5
2,957,095 - MPMX26_02864 0.62 -0.1
2,957,103 - MPMX26_02864 0.62 +0.1
2,957,113 - MPMX26_02864 0.63 -0.2

Or see this region's nucleotide sequence