Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02562

Experiment: Ethanolamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02560 and MPMX26_02561 are separated by 100 nucleotidesMPMX26_02561 and MPMX26_02562 are separated by 139 nucleotidesMPMX26_02562 and MPMX26_02563 are separated by 298 nucleotides MPMX26_02560: MPMX26_02560 - hypothetical protein, at 2,650,518 to 2,653,346 _02560 MPMX26_02561: MPMX26_02561 - hypothetical protein, at 2,653,447 to 2,653,575 _02561 MPMX26_02562: MPMX26_02562 - Ribonucleoside-diphosphate reductase subunit beta, at 2,653,715 to 2,654,998 _02562 MPMX26_02563: MPMX26_02563 - HTH-type transcriptional regulator BenM, at 2,655,297 to 2,656,214 _02563 Position (kb) 2653 2654 2655Strain fitness (log2 ratio) -2 -1 0 1at 2653.354 kb on + strandat 2653.354 kb on + strandat 2653.354 kb on + strandat 2653.354 kb on + strandat 2653.354 kb on + strandat 2653.354 kb on + strandat 2653.354 kb on + strandat 2653.354 kb on + strandat 2653.354 kb on + strandat 2653.354 kb on + strandat 2653.361 kb on + strandat 2653.453 kb on + strandat 2653.459 kb on + strandat 2653.459 kb on + strandat 2653.525 kb on + strand, within MPMX26_02561at 2653.525 kb on + strand, within MPMX26_02561at 2653.525 kb on + strand, within MPMX26_02561at 2653.525 kb on + strand, within MPMX26_02561at 2653.525 kb on + strand, within MPMX26_02561at 2653.525 kb on + strand, within MPMX26_02561at 2653.525 kb on + strand, within MPMX26_02561at 2653.552 kb on + strand, within MPMX26_02561at 2653.576 kb on + strandat 2653.636 kb on + strandat 2653.648 kb on + strandat 2653.650 kb on + strandat 2653.688 kb on + strandat 2654.994 kb on + strandat 2654.994 kb on + strandat 2655.042 kb on + strandat 2655.061 kb on + strandat 2655.069 kb on + strandat 2655.076 kb on + strandat 2655.527 kb on - strand, within MPMX26_02563at 2655.621 kb on - strand, within MPMX26_02563at 2655.621 kb on - strand, within MPMX26_02563at 2655.716 kb on - strand, within MPMX26_02563at 2655.716 kb on - strand, within MPMX26_02563at 2655.950 kb on - strand, within MPMX26_02563

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanolamine (N)
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2,653,354 + +0.2
2,653,354 + +0.0
2,653,354 + -0.0
2,653,354 + +1.0
2,653,354 + +1.0
2,653,354 + +0.8
2,653,354 + +0.3
2,653,354 + +0.3
2,653,354 + +0.3
2,653,354 + +0.1
2,653,361 + +0.7
2,653,453 + +0.7
2,653,459 + +1.0
2,653,459 + +0.3
2,653,525 + MPMX26_02561 0.60 +0.8
2,653,525 + MPMX26_02561 0.60 +0.9
2,653,525 + MPMX26_02561 0.60 +0.5
2,653,525 + MPMX26_02561 0.60 +0.2
2,653,525 + MPMX26_02561 0.60 +0.8
2,653,525 + MPMX26_02561 0.60 +0.1
2,653,525 + MPMX26_02561 0.60 -0.0
2,653,552 + MPMX26_02561 0.81 +0.6
2,653,576 + +0.5
2,653,636 + +1.5
2,653,648 + -1.4
2,653,650 + +1.3
2,653,688 + -2.0
2,654,994 + +0.0
2,654,994 + -0.3
2,655,042 + +0.2
2,655,061 + +0.4
2,655,069 + +0.2
2,655,076 + -0.1
2,655,527 - MPMX26_02563 0.25 -1.3
2,655,621 - MPMX26_02563 0.35 -0.2
2,655,621 - MPMX26_02563 0.35 -1.1
2,655,716 - MPMX26_02563 0.46 -0.4
2,655,716 - MPMX26_02563 0.46 -0.0
2,655,950 - MPMX26_02563 0.71 +1.1

Or see this region's nucleotide sequence