Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02184

Experiment: Ethanolamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02183 and MPMX26_02184 are separated by 550 nucleotidesMPMX26_02184 and MPMX26_02185 are separated by 20 nucleotidesMPMX26_02185 and MPMX26_02186 are separated by 20 nucleotides MPMX26_02183: MPMX26_02183 - Phosphoribosylformylglycinamidine synthase, at 2,235,819 to 2,239,652 _02183 MPMX26_02184: MPMX26_02184 - Deoxyguanosinetriphosphate triphosphohydrolase-like protein, at 2,240,203 to 2,241,534 _02184 MPMX26_02185: MPMX26_02185 - Holliday junction ATP-dependent DNA helicase RuvA, at 2,241,555 to 2,242,157 _02185 MPMX26_02186: MPMX26_02186 - Holliday junction ATP-dependent DNA helicase RuvB, at 2,242,178 to 2,243,182 _02186 Position (kb) 2240 2241 2242Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2239.220 kb on - strand, within MPMX26_02183at 2239.245 kb on - strand, within MPMX26_02183at 2239.245 kb on - strand, within MPMX26_02183at 2239.272 kb on - strandat 2239.280 kb on - strandat 2239.280 kb on - strandat 2239.280 kb on - strandat 2239.280 kb on - strandat 2239.332 kb on - strandat 2239.332 kb on - strandat 2239.426 kb on - strandat 2239.426 kb on - strandat 2239.512 kb on - strandat 2239.520 kb on - strandat 2239.547 kb on - strandat 2239.549 kb on - strandat 2239.549 kb on - strandat 2239.549 kb on - strandat 2239.581 kb on - strandat 2239.581 kb on - strandat 2239.581 kb on - strandat 2240.206 kb on + strandat 2240.219 kb on + strandat 2240.229 kb on + strandat 2240.269 kb on + strandat 2240.296 kb on + strandat 2240.296 kb on + strandat 2240.324 kb on + strandat 2240.347 kb on + strand, within MPMX26_02184at 2240.370 kb on + strand, within MPMX26_02184at 2240.370 kb on + strand, within MPMX26_02184at 2240.378 kb on - strand, within MPMX26_02184at 2240.378 kb on - strand, within MPMX26_02184at 2240.389 kb on + strand, within MPMX26_02184at 2240.389 kb on + strand, within MPMX26_02184at 2240.389 kb on + strand, within MPMX26_02184at 2240.389 kb on + strand, within MPMX26_02184at 2240.389 kb on + strand, within MPMX26_02184at 2240.389 kb on + strand, within MPMX26_02184at 2240.389 kb on + strand, within MPMX26_02184at 2240.389 kb on + strand, within MPMX26_02184at 2240.389 kb on + strand, within MPMX26_02184at 2240.389 kb on + strand, within MPMX26_02184at 2240.541 kb on + strand, within MPMX26_02184at 2240.599 kb on + strand, within MPMX26_02184at 2240.605 kb on + strand, within MPMX26_02184at 2240.617 kb on + strand, within MPMX26_02184at 2240.660 kb on + strand, within MPMX26_02184at 2240.862 kb on + strand, within MPMX26_02184at 2240.862 kb on + strand, within MPMX26_02184at 2241.223 kb on + strand, within MPMX26_02184at 2241.223 kb on + strand, within MPMX26_02184at 2241.223 kb on + strand, within MPMX26_02184at 2241.301 kb on + strand, within MPMX26_02184at 2241.477 kb on + strandat 2241.495 kb on + strandat 2241.496 kb on + strandat 2241.496 kb on + strandat 2241.502 kb on + strandat 2241.502 kb on + strandat 2241.502 kb on + strandat 2241.502 kb on + strandat 2241.502 kb on + strandat 2241.502 kb on + strandat 2241.502 kb on + strandat 2241.633 kb on + strand, within MPMX26_02185at 2241.704 kb on + strand, within MPMX26_02185at 2241.719 kb on + strand, within MPMX26_02185at 2241.740 kb on + strand, within MPMX26_02185at 2241.740 kb on + strand, within MPMX26_02185at 2241.846 kb on + strand, within MPMX26_02185at 2241.867 kb on + strand, within MPMX26_02185at 2241.867 kb on + strand, within MPMX26_02185at 2241.867 kb on + strand, within MPMX26_02185at 2241.869 kb on + strand, within MPMX26_02185at 2241.900 kb on + strand, within MPMX26_02185at 2241.944 kb on + strand, within MPMX26_02185at 2241.974 kb on + strand, within MPMX26_02185at 2241.984 kb on + strand, within MPMX26_02185at 2242.013 kb on + strand, within MPMX26_02185at 2242.038 kb on + strand, within MPMX26_02185at 2242.038 kb on + strand, within MPMX26_02185at 2242.038 kb on + strand, within MPMX26_02185at 2242.270 kb on + strandat 2242.328 kb on + strand, within MPMX26_02186at 2242.328 kb on + strand, within MPMX26_02186at 2242.340 kb on + strand, within MPMX26_02186at 2242.340 kb on + strand, within MPMX26_02186at 2242.366 kb on + strand, within MPMX26_02186at 2242.366 kb on + strand, within MPMX26_02186at 2242.366 kb on + strand, within MPMX26_02186at 2242.366 kb on + strand, within MPMX26_02186at 2242.430 kb on + strand, within MPMX26_02186at 2242.451 kb on + strand, within MPMX26_02186at 2242.451 kb on + strand, within MPMX26_02186at 2242.466 kb on + strand, within MPMX26_02186at 2242.466 kb on + strand, within MPMX26_02186at 2242.490 kb on + strand, within MPMX26_02186

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ethanolamine (N)
remove
2,239,220 - MPMX26_02183 0.89 -3.0
2,239,245 - MPMX26_02183 0.89 -3.0
2,239,245 - MPMX26_02183 0.89 -2.6
2,239,272 - -3.0
2,239,280 - -3.6
2,239,280 - -4.0
2,239,280 - -3.7
2,239,280 - -3.1
2,239,332 - -3.9
2,239,332 - -3.1
2,239,426 - -0.7
2,239,426 - -2.1
2,239,512 - -2.8
2,239,520 - -2.4
2,239,547 - -3.7
2,239,549 - -0.7
2,239,549 - -2.9
2,239,549 - -1.7
2,239,581 - -3.2
2,239,581 - -2.3
2,239,581 - -1.7
2,240,206 + -2.4
2,240,219 + -0.5
2,240,229 + -4.2
2,240,269 + -1.0
2,240,296 + -1.6
2,240,296 + -3.7
2,240,324 + -0.7
2,240,347 + MPMX26_02184 0.11 -2.5
2,240,370 + MPMX26_02184 0.13 -0.7
2,240,370 + MPMX26_02184 0.13 -3.0
2,240,378 - MPMX26_02184 0.13 -3.1
2,240,378 - MPMX26_02184 0.13 -2.9
2,240,389 + MPMX26_02184 0.14 -4.2
2,240,389 + MPMX26_02184 0.14 -2.1
2,240,389 + MPMX26_02184 0.14 -0.9
2,240,389 + MPMX26_02184 0.14 -2.6
2,240,389 + MPMX26_02184 0.14 -2.5
2,240,389 + MPMX26_02184 0.14 -1.6
2,240,389 + MPMX26_02184 0.14 -2.1
2,240,389 + MPMX26_02184 0.14 -2.6
2,240,389 + MPMX26_02184 0.14 -0.8
2,240,389 + MPMX26_02184 0.14 -2.3
2,240,541 + MPMX26_02184 0.25 -2.6
2,240,599 + MPMX26_02184 0.30 -3.3
2,240,605 + MPMX26_02184 0.30 -2.9
2,240,617 + MPMX26_02184 0.31 -3.1
2,240,660 + MPMX26_02184 0.34 -1.2
2,240,862 + MPMX26_02184 0.49 -4.3
2,240,862 + MPMX26_02184 0.49 -3.6
2,241,223 + MPMX26_02184 0.77 -0.2
2,241,223 + MPMX26_02184 0.77 -3.0
2,241,223 + MPMX26_02184 0.77 -2.9
2,241,301 + MPMX26_02184 0.82 -2.7
2,241,477 + -3.1
2,241,495 + -2.4
2,241,496 + -2.0
2,241,496 + -1.2
2,241,502 + -1.1
2,241,502 + -3.7
2,241,502 + -3.9
2,241,502 + -1.5
2,241,502 + -0.5
2,241,502 + -0.0
2,241,502 + -1.4
2,241,633 + MPMX26_02185 0.13 -1.6
2,241,704 + MPMX26_02185 0.25 -1.9
2,241,719 + MPMX26_02185 0.27 +0.2
2,241,740 + MPMX26_02185 0.31 +0.6
2,241,740 + MPMX26_02185 0.31 -0.6
2,241,846 + MPMX26_02185 0.48 -0.0
2,241,867 + MPMX26_02185 0.52 -3.8
2,241,867 + MPMX26_02185 0.52 -2.9
2,241,867 + MPMX26_02185 0.52 +0.3
2,241,869 + MPMX26_02185 0.52 -2.4
2,241,900 + MPMX26_02185 0.57 -1.6
2,241,944 + MPMX26_02185 0.65 -1.8
2,241,974 + MPMX26_02185 0.69 -0.9
2,241,984 + MPMX26_02185 0.71 -1.9
2,242,013 + MPMX26_02185 0.76 -2.3
2,242,038 + MPMX26_02185 0.80 -1.6
2,242,038 + MPMX26_02185 0.80 -0.3
2,242,038 + MPMX26_02185 0.80 -3.2
2,242,270 + -2.0
2,242,328 + MPMX26_02186 0.15 -1.6
2,242,328 + MPMX26_02186 0.15 -2.2
2,242,340 + MPMX26_02186 0.16 -1.7
2,242,340 + MPMX26_02186 0.16 -1.7
2,242,366 + MPMX26_02186 0.19 +0.6
2,242,366 + MPMX26_02186 0.19 +1.2
2,242,366 + MPMX26_02186 0.19 -0.4
2,242,366 + MPMX26_02186 0.19 -2.9
2,242,430 + MPMX26_02186 0.25 -3.0
2,242,451 + MPMX26_02186 0.27 -2.1
2,242,451 + MPMX26_02186 0.27 -0.7
2,242,466 + MPMX26_02186 0.29 -0.7
2,242,466 + MPMX26_02186 0.29 -2.1
2,242,490 + MPMX26_02186 0.31 -2.4

Or see this region's nucleotide sequence