Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01548

Experiment: Ethanolamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01547 and MPMX26_01548 are separated by 50 nucleotidesMPMX26_01548 and MPMX26_01549 are separated by 77 nucleotidesMPMX26_01549 and MPMX26_01550 are separated by 15 nucleotides MPMX26_01547: MPMX26_01547 - Acyl-CoA dehydrogenase, at 1,601,919 to 1,603,046 _01547 MPMX26_01548: MPMX26_01548 - Acetyl-coenzyme A synthetase, at 1,603,097 to 1,604,755 _01548 MPMX26_01549: MPMX26_01549 - 3-hydroxyisobutyrate dehydrogenase, at 1,604,833 to 1,605,723 _01549 MPMX26_01550: MPMX26_01550 - Methylmalonate-semialdehyde dehydrogenase [acylating], at 1,605,739 to 1,607,256 _01550 Position (kb) 1603 1604 1605Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1602.886 kb on + strand, within MPMX26_01547at 1603.018 kb on + strandat 1603.722 kb on - strand, within MPMX26_01548

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanolamine (N)
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1,602,886 + MPMX26_01547 0.86 +0.1
1,603,018 + -1.3
1,603,722 - MPMX26_01548 0.38 -3.9

Or see this region's nucleotide sequence