Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01100

Experiment: Ethanolamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_01099 and MPMX26_01100 are separated by 10 nucleotidesMPMX26_01100 and MPMX26_01101 are separated by 202 nucleotides MPMX26_01099: MPMX26_01099 - Aspartate carbamoyltransferase, at 1,171,004 to 1,172,020 _01099 MPMX26_01100: MPMX26_01100 - Dihydroorotase-like protein, at 1,172,031 to 1,173,266 _01100 MPMX26_01101: MPMX26_01101 - Peptidoglycan-associated lipoprotein, at 1,173,469 to 1,174,929 _01101 Position (kb) 1172 1173 1174Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1171.187 kb on + strand, within MPMX26_01099at 1171.297 kb on + strand, within MPMX26_01099at 1171.315 kb on + strand, within MPMX26_01099at 1171.448 kb on + strand, within MPMX26_01099at 1171.468 kb on + strand, within MPMX26_01099at 1171.468 kb on + strand, within MPMX26_01099at 1171.472 kb on + strand, within MPMX26_01099at 1171.472 kb on + strand, within MPMX26_01099at 1171.568 kb on + strand, within MPMX26_01099at 1171.586 kb on + strand, within MPMX26_01099at 1171.633 kb on + strand, within MPMX26_01099at 1171.945 kb on + strandat 1171.945 kb on + strandat 1171.945 kb on + strandat 1171.945 kb on + strandat 1171.945 kb on + strandat 1172.011 kb on + strandat 1172.021 kb on + strandat 1172.028 kb on + strandat 1172.205 kb on + strand, within MPMX26_01100at 1172.321 kb on + strand, within MPMX26_01100at 1172.363 kb on + strand, within MPMX26_01100at 1172.402 kb on + strand, within MPMX26_01100at 1172.481 kb on + strand, within MPMX26_01100at 1172.535 kb on + strand, within MPMX26_01100at 1172.540 kb on + strand, within MPMX26_01100at 1172.540 kb on + strand, within MPMX26_01100at 1172.540 kb on + strand, within MPMX26_01100at 1172.540 kb on + strand, within MPMX26_01100at 1172.540 kb on + strand, within MPMX26_01100at 1172.540 kb on + strand, within MPMX26_01100at 1172.555 kb on + strand, within MPMX26_01100at 1172.555 kb on + strand, within MPMX26_01100at 1172.555 kb on + strand, within MPMX26_01100at 1172.598 kb on + strand, within MPMX26_01100at 1172.642 kb on + strand, within MPMX26_01100at 1172.723 kb on + strand, within MPMX26_01100at 1172.747 kb on + strand, within MPMX26_01100at 1172.762 kb on + strand, within MPMX26_01100at 1172.802 kb on + strand, within MPMX26_01100at 1172.862 kb on + strand, within MPMX26_01100at 1172.862 kb on + strand, within MPMX26_01100at 1172.862 kb on + strand, within MPMX26_01100at 1172.862 kb on + strand, within MPMX26_01100at 1172.862 kb on + strand, within MPMX26_01100at 1172.862 kb on + strand, within MPMX26_01100at 1172.862 kb on + strand, within MPMX26_01100at 1172.874 kb on + strand, within MPMX26_01100at 1172.874 kb on + strand, within MPMX26_01100at 1172.874 kb on + strand, within MPMX26_01100at 1172.874 kb on + strand, within MPMX26_01100at 1172.879 kb on + strand, within MPMX26_01100at 1172.886 kb on + strand, within MPMX26_01100at 1172.901 kb on + strand, within MPMX26_01100at 1172.946 kb on + strand, within MPMX26_01100at 1173.038 kb on + strand, within MPMX26_01100at 1173.038 kb on + strand, within MPMX26_01100at 1173.048 kb on + strand, within MPMX26_01100at 1173.149 kb on + strandat 1173.164 kb on + strandat 1173.164 kb on + strandat 1173.194 kb on + strandat 1173.194 kb on + strandat 1173.231 kb on + strandat 1173.236 kb on + strandat 1173.236 kb on + strandat 1173.236 kb on + strandat 1173.236 kb on + strandat 1173.825 kb on + strand, within MPMX26_01101

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ethanolamine (N)
remove
1,171,187 + MPMX26_01099 0.18 -1.8
1,171,297 + MPMX26_01099 0.29 -2.3
1,171,315 + MPMX26_01099 0.31 -1.4
1,171,448 + MPMX26_01099 0.44 -1.0
1,171,468 + MPMX26_01099 0.46 -1.0
1,171,468 + MPMX26_01099 0.46 -1.2
1,171,472 + MPMX26_01099 0.46 -1.8
1,171,472 + MPMX26_01099 0.46 -2.6
1,171,568 + MPMX26_01099 0.55 -1.4
1,171,586 + MPMX26_01099 0.57 -1.2
1,171,633 + MPMX26_01099 0.62 -1.6
1,171,945 + -2.0
1,171,945 + -2.8
1,171,945 + -1.2
1,171,945 + -2.2
1,171,945 + -1.0
1,172,011 + -1.0
1,172,021 + -2.9
1,172,028 + -2.0
1,172,205 + MPMX26_01100 0.14 -1.6
1,172,321 + MPMX26_01100 0.23 -1.2
1,172,363 + MPMX26_01100 0.27 -1.7
1,172,402 + MPMX26_01100 0.30 -1.4
1,172,481 + MPMX26_01100 0.36 -1.0
1,172,535 + MPMX26_01100 0.41 -1.0
1,172,540 + MPMX26_01100 0.41 -1.4
1,172,540 + MPMX26_01100 0.41 -2.1
1,172,540 + MPMX26_01100 0.41 -1.9
1,172,540 + MPMX26_01100 0.41 -2.6
1,172,540 + MPMX26_01100 0.41 -0.7
1,172,540 + MPMX26_01100 0.41 -2.2
1,172,555 + MPMX26_01100 0.42 -2.0
1,172,555 + MPMX26_01100 0.42 -0.7
1,172,555 + MPMX26_01100 0.42 -1.7
1,172,598 + MPMX26_01100 0.46 -1.7
1,172,642 + MPMX26_01100 0.49 -1.4
1,172,723 + MPMX26_01100 0.56 -2.2
1,172,747 + MPMX26_01100 0.58 -1.2
1,172,762 + MPMX26_01100 0.59 -1.2
1,172,802 + MPMX26_01100 0.62 -1.0
1,172,862 + MPMX26_01100 0.67 -2.4
1,172,862 + MPMX26_01100 0.67 -1.6
1,172,862 + MPMX26_01100 0.67 -1.9
1,172,862 + MPMX26_01100 0.67 -1.2
1,172,862 + MPMX26_01100 0.67 -0.4
1,172,862 + MPMX26_01100 0.67 -0.4
1,172,862 + MPMX26_01100 0.67 -1.2
1,172,874 + MPMX26_01100 0.68 +0.3
1,172,874 + MPMX26_01100 0.68 -1.9
1,172,874 + MPMX26_01100 0.68 -1.4
1,172,874 + MPMX26_01100 0.68 -1.4
1,172,879 + MPMX26_01100 0.69 -1.0
1,172,886 + MPMX26_01100 0.69 -2.7
1,172,901 + MPMX26_01100 0.70 -2.1
1,172,946 + MPMX26_01100 0.74 -0.0
1,173,038 + MPMX26_01100 0.81 -1.2
1,173,038 + MPMX26_01100 0.81 -1.2
1,173,048 + MPMX26_01100 0.82 -1.2
1,173,149 + -1.7
1,173,164 + -1.4
1,173,164 + -1.2
1,173,194 + -2.1
1,173,194 + -1.9
1,173,231 + -1.0
1,173,236 + -4.3
1,173,236 + -3.7
1,173,236 + -5.7
1,173,236 + -3.2
1,173,825 + MPMX26_01101 0.24 -0.0

Or see this region's nucleotide sequence