Experiment: Ethanolamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00327 and MPMX26_00328 overlap by 4 nucleotides MPMX26_00328 and MPMX26_00329 overlap by 1 nucleotides MPMX26_00329 and MPMX26_00330 are separated by 2 nucleotides
MPMX26_00327: MPMX26_00327 - 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha, at 356,486 to 357,853
_00327
MPMX26_00328: MPMX26_00328 - 3-phenylpropionate/cinnamic acid dioxygenase subunit beta, at 357,850 to 358,368
_00328
MPMX26_00329: MPMX26_00329 - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit, at 358,368 to 358,694
_00329
MPMX26_00330: MPMX26_00330 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 358,697 to 359,512
_00330
Position (kb) 357
358
359 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 357.507 kb on + strand, within MPMX26_00327 at 358.117 kb on + strand, within MPMX26_00328 at 358.276 kb on + strand, within MPMX26_00328 at 358.350 kb on + strand at 358.454 kb on - strand, within MPMX26_00329 at 358.493 kb on + strand, within MPMX26_00329 at 358.897 kb on + strand, within MPMX26_00330 at 359.065 kb on + strand, within MPMX26_00330 at 359.065 kb on + strand, within MPMX26_00330 at 359.103 kb on + strand, within MPMX26_00330
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanolamine (N) remove 357,507 + MPMX26_00327 0.75 +0.5 358,117 + MPMX26_00328 0.51 -1.4 358,276 + MPMX26_00328 0.82 -3.2 358,350 + +0.7 358,454 - MPMX26_00329 0.26 -1.0 358,493 + MPMX26_00329 0.38 +0.6 358,897 + MPMX26_00330 0.25 +1.3 359,065 + MPMX26_00330 0.45 -1.4 359,065 + MPMX26_00330 0.45 -1.4 359,103 + MPMX26_00330 0.50 +0.6
Or see this region's nucleotide sequence