Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00328

Experiment: Ethanolamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00327 and MPMX26_00328 overlap by 4 nucleotidesMPMX26_00328 and MPMX26_00329 overlap by 1 nucleotidesMPMX26_00329 and MPMX26_00330 are separated by 2 nucleotides MPMX26_00327: MPMX26_00327 - 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha, at 356,486 to 357,853 _00327 MPMX26_00328: MPMX26_00328 - 3-phenylpropionate/cinnamic acid dioxygenase subunit beta, at 357,850 to 358,368 _00328 MPMX26_00329: MPMX26_00329 - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit, at 358,368 to 358,694 _00329 MPMX26_00330: MPMX26_00330 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 358,697 to 359,512 _00330 Position (kb) 357 358 359Strain fitness (log2 ratio) -3 -2 -1 0 1at 357.507 kb on + strand, within MPMX26_00327at 358.117 kb on + strand, within MPMX26_00328at 358.276 kb on + strand, within MPMX26_00328at 358.350 kb on + strandat 358.454 kb on - strand, within MPMX26_00329at 358.493 kb on + strand, within MPMX26_00329at 358.897 kb on + strand, within MPMX26_00330at 359.065 kb on + strand, within MPMX26_00330at 359.065 kb on + strand, within MPMX26_00330at 359.103 kb on + strand, within MPMX26_00330

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanolamine (N)
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357,507 + MPMX26_00327 0.75 +0.5
358,117 + MPMX26_00328 0.51 -1.4
358,276 + MPMX26_00328 0.82 -3.2
358,350 + +0.7
358,454 - MPMX26_00329 0.26 -1.0
358,493 + MPMX26_00329 0.38 +0.6
358,897 + MPMX26_00330 0.25 +1.3
359,065 + MPMX26_00330 0.45 -1.4
359,065 + MPMX26_00330 0.45 -1.4
359,103 + MPMX26_00330 0.50 +0.6

Or see this region's nucleotide sequence