Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05072 and BACOVA_05073 are separated by 629 nucleotides BACOVA_05073 and BACOVA_05074 are separated by 20 nucleotides BACOVA_05074 and BACOVA_05075 are separated by 129 nucleotides
BACOVA_05072: BACOVA_05072 - hypothetical protein, at 545,247 to 545,576
_05072
BACOVA_05073: BACOVA_05073 - SPFH/Band 7/PHB domain protein, at 546,206 to 547,858
_05073
BACOVA_05074: BACOVA_05074 - hypothetical protein, at 547,879 to 548,376
_05074
BACOVA_05075: BACOVA_05075 - tRNA pseudouridine synthase A, at 548,506 to 549,309
_05075
Position (kb) 546
547
548 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 545.236 kb on + strand at 545.277 kb on - strand at 545.280 kb on - strand, within BACOVA_05072 at 545.319 kb on + strand, within BACOVA_05072 at 545.320 kb on - strand, within BACOVA_05072 at 545.419 kb on + strand, within BACOVA_05072 at 545.420 kb on - strand, within BACOVA_05072 at 545.424 kb on + strand, within BACOVA_05072 at 545.424 kb on + strand, within BACOVA_05072 at 545.425 kb on - strand, within BACOVA_05072 at 545.442 kb on + strand, within BACOVA_05072 at 545.442 kb on + strand, within BACOVA_05072 at 545.443 kb on - strand, within BACOVA_05072 at 545.446 kb on - strand, within BACOVA_05072 at 545.494 kb on - strand, within BACOVA_05072 at 545.498 kb on - strand, within BACOVA_05072 at 545.498 kb on - strand, within BACOVA_05072 at 545.525 kb on + strand, within BACOVA_05072 at 545.550 kb on + strand at 545.551 kb on - strand at 545.553 kb on - strand at 545.554 kb on + strand at 545.560 kb on - strand at 545.560 kb on - strand at 545.562 kb on + strand at 545.563 kb on - strand at 545.563 kb on - strand at 545.578 kb on + strand at 545.578 kb on + strand at 545.578 kb on + strand at 545.587 kb on + strand at 545.607 kb on - strand at 545.607 kb on - strand at 545.619 kb on + strand at 545.628 kb on - strand at 545.629 kb on + strand at 545.632 kb on + strand at 545.664 kb on - strand at 545.698 kb on + strand at 545.699 kb on - strand at 545.699 kb on - strand at 545.699 kb on - strand at 545.699 kb on - strand at 545.700 kb on + strand at 545.720 kb on + strand at 545.720 kb on + strand at 545.720 kb on + strand at 545.721 kb on - strand at 545.724 kb on - strand at 545.734 kb on + strand at 545.734 kb on + strand at 545.735 kb on - strand at 545.735 kb on - strand at 545.778 kb on - strand at 545.781 kb on - strand at 545.784 kb on + strand at 545.789 kb on - strand at 545.791 kb on + strand at 545.791 kb on + strand at 545.793 kb on + strand at 545.796 kb on - strand at 545.808 kb on - strand at 545.850 kb on - strand at 545.872 kb on - strand at 545.934 kb on - strand at 546.052 kb on - strand at 546.069 kb on + strand at 546.083 kb on + strand at 546.130 kb on + strand at 546.133 kb on - strand at 546.133 kb on - strand at 546.163 kb on + strand at 546.164 kb on - strand at 546.186 kb on + strand at 546.187 kb on - strand at 546.187 kb on - strand at 546.189 kb on - strand at 546.191 kb on + strand at 546.191 kb on + strand at 546.191 kb on + strand at 546.192 kb on - strand at 546.192 kb on - strand at 546.202 kb on - strand at 546.278 kb on - strand at 546.278 kb on - strand at 546.278 kb on - strand at 546.278 kb on - strand at 546.332 kb on + strand at 546.333 kb on - strand at 546.341 kb on + strand at 546.344 kb on + strand at 546.364 kb on + strand at 546.389 kb on + strand, within BACOVA_05073 at 546.389 kb on + strand, within BACOVA_05073 at 546.390 kb on - strand, within BACOVA_05073 at 546.397 kb on + strand, within BACOVA_05073 at 546.461 kb on + strand, within BACOVA_05073 at 546.462 kb on - strand, within BACOVA_05073 at 546.469 kb on + strand, within BACOVA_05073 at 546.469 kb on + strand, within BACOVA_05073 at 546.471 kb on + strand, within BACOVA_05073 at 546.509 kb on + strand, within BACOVA_05073 at 546.617 kb on + strand, within BACOVA_05073 at 546.995 kb on - strand, within BACOVA_05073 at 547.041 kb on - strand, within BACOVA_05073 at 547.094 kb on - strand, within BACOVA_05073 at 547.094 kb on - strand, within BACOVA_05073 at 547.122 kb on - strand, within BACOVA_05073 at 547.213 kb on + strand, within BACOVA_05073 at 547.300 kb on - strand, within BACOVA_05073 at 547.300 kb on - strand, within BACOVA_05073 at 547.300 kb on - strand, within BACOVA_05073 at 547.375 kb on + strand, within BACOVA_05073 at 547.375 kb on + strand, within BACOVA_05073 at 547.376 kb on - strand, within BACOVA_05073 at 547.376 kb on - strand, within BACOVA_05073 at 547.378 kb on + strand, within BACOVA_05073 at 547.379 kb on - strand, within BACOVA_05073 at 547.436 kb on - strand, within BACOVA_05073 at 547.450 kb on + strand, within BACOVA_05073 at 547.464 kb on + strand, within BACOVA_05073 at 547.465 kb on - strand, within BACOVA_05073 at 547.466 kb on + strand, within BACOVA_05073 at 547.466 kb on + strand, within BACOVA_05073 at 547.466 kb on + strand, within BACOVA_05073 at 547.466 kb on + strand, within BACOVA_05073 at 547.466 kb on + strand, within BACOVA_05073 at 547.466 kb on + strand, within BACOVA_05073 at 547.466 kb on + strand, within BACOVA_05073 at 547.467 kb on - strand, within BACOVA_05073 at 547.478 kb on - strand, within BACOVA_05073 at 547.481 kb on + strand, within BACOVA_05073 at 547.517 kb on - strand, within BACOVA_05073 at 547.517 kb on - strand, within BACOVA_05073 at 547.563 kb on - strand, within BACOVA_05073 at 547.574 kb on - strand, within BACOVA_05073 at 547.586 kb on + strand, within BACOVA_05073 at 547.586 kb on + strand, within BACOVA_05073 at 547.624 kb on + strand, within BACOVA_05073 at 547.625 kb on - strand, within BACOVA_05073 at 547.625 kb on - strand, within BACOVA_05073 at 547.738 kb on + strand at 547.739 kb on - strand at 547.743 kb on + strand at 547.744 kb on - strand at 547.746 kb on - strand at 547.768 kb on + strand at 547.768 kb on + strand at 547.793 kb on - strand at 547.823 kb on + strand at 547.826 kb on + strand at 547.829 kb on - strand at 547.829 kb on - strand at 547.864 kb on + strand at 547.876 kb on + strand at 547.880 kb on + strand at 548.009 kb on + strand, within BACOVA_05074 at 548.009 kb on + strand, within BACOVA_05074 at 548.033 kb on + strand, within BACOVA_05074 at 548.033 kb on + strand, within BACOVA_05074 at 548.033 kb on + strand, within BACOVA_05074 at 548.033 kb on + strand, within BACOVA_05074 at 548.112 kb on - strand, within BACOVA_05074 at 548.165 kb on + strand, within BACOVA_05074 at 548.165 kb on + strand, within BACOVA_05074 at 548.195 kb on + strand, within BACOVA_05074 at 548.195 kb on + strand, within BACOVA_05074 at 548.195 kb on + strand, within BACOVA_05074 at 548.196 kb on - strand, within BACOVA_05074 at 548.201 kb on + strand, within BACOVA_05074 at 548.202 kb on - strand, within BACOVA_05074 at 548.230 kb on + strand, within BACOVA_05074 at 548.239 kb on - strand, within BACOVA_05074 at 548.249 kb on - strand, within BACOVA_05074 at 548.270 kb on - strand, within BACOVA_05074 at 548.287 kb on + strand, within BACOVA_05074 at 548.288 kb on - strand, within BACOVA_05074 at 548.288 kb on - strand, within BACOVA_05074 at 548.288 kb on - strand, within BACOVA_05074 at 548.288 kb on - strand, within BACOVA_05074 at 548.288 kb on - strand, within BACOVA_05074 at 548.308 kb on + strand, within BACOVA_05074 at 548.309 kb on - strand, within BACOVA_05074 at 548.352 kb on + strand at 548.352 kb on + strand at 548.370 kb on + strand at 548.387 kb on + strand at 548.421 kb on - strand at 548.436 kb on + strand at 548.449 kb on + strand at 548.450 kb on - strand at 548.450 kb on - strand at 548.458 kb on + strand at 548.614 kb on - strand, within BACOVA_05075 at 548.639 kb on + strand, within BACOVA_05075 at 548.639 kb on + strand, within BACOVA_05075 at 548.643 kb on - strand, within BACOVA_05075 at 548.718 kb on + strand, within BACOVA_05075 at 548.722 kb on - strand, within BACOVA_05075 at 548.773 kb on + strand, within BACOVA_05075 at 548.836 kb on - strand, within BACOVA_05075 at 548.843 kb on - strand, within BACOVA_05075 at 548.843 kb on - strand, within BACOVA_05075
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 545,236 + -0.4 545,277 - +1.3 545,280 - BACOVA_05072 0.10 -0.4 545,319 + BACOVA_05072 0.22 +0.5 545,320 - BACOVA_05072 0.22 +0.9 545,419 + BACOVA_05072 0.52 -0.9 545,420 - BACOVA_05072 0.52 -0.4 545,424 + BACOVA_05072 0.54 +0.5 545,424 + BACOVA_05072 0.54 +1.1 545,425 - BACOVA_05072 0.54 -0.3 545,442 + BACOVA_05072 0.59 -0.6 545,442 + BACOVA_05072 0.59 +0.4 545,443 - BACOVA_05072 0.59 +0.0 545,446 - BACOVA_05072 0.60 +1.0 545,494 - BACOVA_05072 0.75 +0.7 545,498 - BACOVA_05072 0.76 +0.8 545,498 - BACOVA_05072 0.76 +1.5 545,525 + BACOVA_05072 0.84 -1.3 545,550 + +0.1 545,551 - -0.1 545,553 - -0.2 545,554 + +2.8 545,560 - -0.5 545,560 - +0.5 545,562 + +1.6 545,563 - +0.4 545,563 - +0.1 545,578 + -0.7 545,578 + +0.4 545,578 + +1.6 545,587 + -0.7 545,607 - -0.5 545,607 - -2.4 545,619 + +1.6 545,628 - -0.5 545,629 + +0.6 545,632 + -1.5 545,664 - -0.1 545,698 + -1.9 545,699 - +1.6 545,699 - -0.3 545,699 - -0.8 545,699 - +0.2 545,700 + -0.7 545,720 + -0.4 545,720 + -0.2 545,720 + -0.6 545,721 - +0.2 545,724 - -0.5 545,734 + -0.2 545,734 + -0.8 545,735 - -0.9 545,735 - -2.3 545,778 - -0.6 545,781 - -0.4 545,784 + -1.5 545,789 - +0.1 545,791 + +1.1 545,791 + +0.3 545,793 + +0.5 545,796 - +0.5 545,808 - -0.7 545,850 - -1.9 545,872 - -1.2 545,934 - -0.8 546,052 - -0.4 546,069 + +0.1 546,083 + -2.2 546,130 + +0.5 546,133 - -1.2 546,133 - +0.6 546,163 + -0.3 546,164 - -0.5 546,186 + +0.2 546,187 - -1.8 546,187 - +0.5 546,189 - -1.2 546,191 + +0.1 546,191 + +0.2 546,191 + +0.4 546,192 - -0.0 546,192 - +0.5 546,202 - -0.6 546,278 - -0.7 546,278 - -3.1 546,278 - -0.9 546,278 - -1.3 546,332 + -0.7 546,333 - -0.2 546,341 + -0.5 546,344 + -0.4 546,364 + +0.7 546,389 + BACOVA_05073 0.11 +1.1 546,389 + BACOVA_05073 0.11 +1.3 546,390 - BACOVA_05073 0.11 +0.5 546,397 + BACOVA_05073 0.12 -0.2 546,461 + BACOVA_05073 0.15 -0.1 546,462 - BACOVA_05073 0.15 +0.2 546,469 + BACOVA_05073 0.16 +2.4 546,469 + BACOVA_05073 0.16 -1.1 546,471 + BACOVA_05073 0.16 +0.5 546,509 + BACOVA_05073 0.18 -0.4 546,617 + BACOVA_05073 0.25 +1.0 546,995 - BACOVA_05073 0.48 +0.8 547,041 - BACOVA_05073 0.51 +0.8 547,094 - BACOVA_05073 0.54 +0.2 547,094 - BACOVA_05073 0.54 +0.0 547,122 - BACOVA_05073 0.55 +0.7 547,213 + BACOVA_05073 0.61 -0.6 547,300 - BACOVA_05073 0.66 +0.9 547,300 - BACOVA_05073 0.66 +0.4 547,300 - BACOVA_05073 0.66 +1.8 547,375 + BACOVA_05073 0.71 +0.1 547,375 + BACOVA_05073 0.71 +0.2 547,376 - BACOVA_05073 0.71 +0.4 547,376 - BACOVA_05073 0.71 -0.4 547,378 + BACOVA_05073 0.71 -0.1 547,379 - BACOVA_05073 0.71 -0.4 547,436 - BACOVA_05073 0.74 +1.2 547,450 + BACOVA_05073 0.75 -0.1 547,464 + BACOVA_05073 0.76 -0.8 547,465 - BACOVA_05073 0.76 -0.1 547,466 + BACOVA_05073 0.76 +0.8 547,466 + BACOVA_05073 0.76 +0.1 547,466 + BACOVA_05073 0.76 -0.0 547,466 + BACOVA_05073 0.76 +0.4 547,466 + BACOVA_05073 0.76 +1.1 547,466 + BACOVA_05073 0.76 -0.9 547,466 + BACOVA_05073 0.76 +0.3 547,467 - BACOVA_05073 0.76 -0.6 547,478 - BACOVA_05073 0.77 -0.3 547,481 + BACOVA_05073 0.77 +0.3 547,517 - BACOVA_05073 0.79 -0.3 547,517 - BACOVA_05073 0.79 -0.4 547,563 - BACOVA_05073 0.82 -0.2 547,574 - BACOVA_05073 0.83 +0.7 547,586 + BACOVA_05073 0.83 +0.7 547,586 + BACOVA_05073 0.83 -0.6 547,624 + BACOVA_05073 0.86 -0.1 547,625 - BACOVA_05073 0.86 +1.2 547,625 - BACOVA_05073 0.86 +0.2 547,738 + -1.1 547,739 - -0.0 547,743 + +0.2 547,744 - +1.0 547,746 - -0.4 547,768 + +0.7 547,768 + -0.7 547,793 - -0.4 547,823 + +0.2 547,826 + -1.2 547,829 - +0.5 547,829 - -0.6 547,864 + +0.9 547,876 + -0.9 547,880 + -0.2 548,009 + BACOVA_05074 0.26 +1.2 548,009 + BACOVA_05074 0.26 +0.1 548,033 + BACOVA_05074 0.31 +0.9 548,033 + BACOVA_05074 0.31 +0.3 548,033 + BACOVA_05074 0.31 -0.4 548,033 + BACOVA_05074 0.31 -0.2 548,112 - BACOVA_05074 0.47 -1.5 548,165 + BACOVA_05074 0.57 -0.0 548,165 + BACOVA_05074 0.57 -0.1 548,195 + BACOVA_05074 0.63 -0.3 548,195 + BACOVA_05074 0.63 -0.2 548,195 + BACOVA_05074 0.63 +0.1 548,196 - BACOVA_05074 0.64 -2.1 548,201 + BACOVA_05074 0.65 -1.2 548,202 - BACOVA_05074 0.65 -0.4 548,230 + BACOVA_05074 0.70 +2.4 548,239 - BACOVA_05074 0.72 +0.6 548,249 - BACOVA_05074 0.74 -0.8 548,270 - BACOVA_05074 0.79 -0.6 548,287 + BACOVA_05074 0.82 -0.8 548,288 - BACOVA_05074 0.82 +0.6 548,288 - BACOVA_05074 0.82 +0.2 548,288 - BACOVA_05074 0.82 -3.0 548,288 - BACOVA_05074 0.82 -0.1 548,288 - BACOVA_05074 0.82 -1.2 548,308 + BACOVA_05074 0.86 +1.0 548,309 - BACOVA_05074 0.86 -1.8 548,352 + -1.2 548,352 + +0.3 548,370 + -1.0 548,387 + +0.5 548,421 - +0.5 548,436 + +1.7 548,449 + -0.5 548,450 - -0.8 548,450 - -0.5 548,458 + -0.6 548,614 - BACOVA_05075 0.13 +0.7 548,639 + BACOVA_05075 0.17 -0.1 548,639 + BACOVA_05075 0.17 -1.7 548,643 - BACOVA_05075 0.17 +1.1 548,718 + BACOVA_05075 0.26 +0.3 548,722 - BACOVA_05075 0.27 -1.9 548,773 + BACOVA_05075 0.33 -1.0 548,836 - BACOVA_05075 0.41 -0.2 548,843 - BACOVA_05075 0.42 -0.2 548,843 - BACOVA_05075 0.42 -0.9
Or see this region's nucleotide sequence