Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04789 and BACOVA_04790 are separated by 152 nucleotides BACOVA_04790 and BACOVA_04791 are separated by 9 nucleotides
BACOVA_04789: BACOVA_04789 - site-specific recombinase, phage integrase family, at 140,201 to 141,346
_04789
BACOVA_04790: BACOVA_04790 - hypothetical protein, at 141,499 to 141,678
_04790
BACOVA_04791: BACOVA_04791 - Eco57I restriction endonuclease, at 141,688 to 144,387
_04791
Position (kb) 141
142 Strain fitness (log2 ratio) -2
-1
0
1
2 at 140.531 kb on - strand, within BACOVA_04789 at 140.531 kb on - strand, within BACOVA_04789 at 140.568 kb on + strand, within BACOVA_04789 at 140.569 kb on - strand, within BACOVA_04789 at 140.613 kb on - strand, within BACOVA_04789 at 140.614 kb on + strand, within BACOVA_04789 at 140.666 kb on + strand, within BACOVA_04789 at 140.667 kb on - strand, within BACOVA_04789 at 140.690 kb on - strand, within BACOVA_04789 at 140.712 kb on - strand, within BACOVA_04789 at 140.712 kb on - strand, within BACOVA_04789 at 140.740 kb on + strand, within BACOVA_04789 at 140.865 kb on + strand, within BACOVA_04789 at 140.866 kb on - strand, within BACOVA_04789 at 140.873 kb on + strand, within BACOVA_04789 at 140.874 kb on - strand, within BACOVA_04789 at 140.874 kb on - strand, within BACOVA_04789 at 140.874 kb on - strand, within BACOVA_04789 at 140.910 kb on + strand, within BACOVA_04789 at 140.920 kb on - strand, within BACOVA_04789 at 140.984 kb on + strand, within BACOVA_04789 at 141.048 kb on + strand, within BACOVA_04789 at 141.072 kb on + strand, within BACOVA_04789 at 141.086 kb on - strand, within BACOVA_04789 at 141.123 kb on - strand, within BACOVA_04789 at 141.187 kb on + strand, within BACOVA_04789 at 141.208 kb on + strand, within BACOVA_04789 at 141.208 kb on + strand, within BACOVA_04789 at 141.209 kb on - strand, within BACOVA_04789 at 141.210 kb on + strand, within BACOVA_04789 at 141.210 kb on + strand, within BACOVA_04789 at 141.210 kb on + strand, within BACOVA_04789 at 141.210 kb on + strand, within BACOVA_04789 at 141.211 kb on - strand, within BACOVA_04789 at 141.223 kb on - strand, within BACOVA_04789 at 141.228 kb on + strand, within BACOVA_04789 at 141.229 kb on - strand, within BACOVA_04789 at 141.229 kb on - strand, within BACOVA_04789 at 141.249 kb on + strand at 141.249 kb on + strand at 141.249 kb on + strand at 141.250 kb on - strand at 141.251 kb on + strand at 141.254 kb on - strand at 141.326 kb on - strand at 141.335 kb on - strand at 141.335 kb on - strand at 141.379 kb on + strand at 141.387 kb on + strand at 141.388 kb on - strand at 141.433 kb on + strand at 141.434 kb on - strand at 141.434 kb on - strand at 141.434 kb on - strand at 141.434 kb on - strand at 141.487 kb on + strand at 141.610 kb on - strand, within BACOVA_04790 at 141.631 kb on - strand, within BACOVA_04790 at 141.678 kb on + strand at 141.678 kb on + strand at 141.923 kb on + strand at 141.943 kb on + strand at 141.944 kb on - strand at 141.944 kb on - strand at 141.944 kb on - strand at 141.944 kb on - strand at 141.945 kb on + strand at 141.945 kb on + strand at 141.948 kb on + strand at 141.967 kb on - strand, within BACOVA_04791 at 142.030 kb on + strand, within BACOVA_04791 at 142.030 kb on + strand, within BACOVA_04791 at 142.030 kb on + strand, within BACOVA_04791 at 142.030 kb on + strand, within BACOVA_04791 at 142.031 kb on - strand, within BACOVA_04791 at 142.031 kb on - strand, within BACOVA_04791 at 142.131 kb on + strand, within BACOVA_04791 at 142.222 kb on - strand, within BACOVA_04791 at 142.276 kb on + strand, within BACOVA_04791 at 142.276 kb on + strand, within BACOVA_04791 at 142.277 kb on - strand, within BACOVA_04791 at 142.277 kb on - strand, within BACOVA_04791 at 142.278 kb on + strand, within BACOVA_04791 at 142.278 kb on + strand, within BACOVA_04791 at 142.415 kb on - strand, within BACOVA_04791 at 142.558 kb on - strand, within BACOVA_04791 at 142.585 kb on + strand, within BACOVA_04791 at 142.617 kb on + strand, within BACOVA_04791
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 140,531 - BACOVA_04789 0.29 -0.7 140,531 - BACOVA_04789 0.29 -0.3 140,568 + BACOVA_04789 0.32 +0.7 140,569 - BACOVA_04789 0.32 +0.6 140,613 - BACOVA_04789 0.36 +0.9 140,614 + BACOVA_04789 0.36 +0.8 140,666 + BACOVA_04789 0.41 -0.6 140,667 - BACOVA_04789 0.41 +1.3 140,690 - BACOVA_04789 0.43 -0.5 140,712 - BACOVA_04789 0.45 -0.6 140,712 - BACOVA_04789 0.45 +0.3 140,740 + BACOVA_04789 0.47 +1.1 140,865 + BACOVA_04789 0.58 +0.2 140,866 - BACOVA_04789 0.58 -0.3 140,873 + BACOVA_04789 0.59 -0.6 140,874 - BACOVA_04789 0.59 -0.6 140,874 - BACOVA_04789 0.59 +2.7 140,874 - BACOVA_04789 0.59 +0.6 140,910 + BACOVA_04789 0.62 +0.0 140,920 - BACOVA_04789 0.63 +1.4 140,984 + BACOVA_04789 0.68 -0.2 141,048 + BACOVA_04789 0.74 +0.2 141,072 + BACOVA_04789 0.76 +0.2 141,086 - BACOVA_04789 0.77 +0.0 141,123 - BACOVA_04789 0.80 -0.2 141,187 + BACOVA_04789 0.86 -0.2 141,208 + BACOVA_04789 0.88 -0.4 141,208 + BACOVA_04789 0.88 -1.7 141,209 - BACOVA_04789 0.88 -1.9 141,210 + BACOVA_04789 0.88 +0.3 141,210 + BACOVA_04789 0.88 -0.1 141,210 + BACOVA_04789 0.88 -0.3 141,210 + BACOVA_04789 0.88 +0.2 141,211 - BACOVA_04789 0.88 +0.8 141,223 - BACOVA_04789 0.89 +0.3 141,228 + BACOVA_04789 0.90 -0.3 141,229 - BACOVA_04789 0.90 +0.3 141,229 - BACOVA_04789 0.90 +1.4 141,249 + +0.5 141,249 + -0.5 141,249 + +2.1 141,250 - -0.7 141,251 + -0.9 141,254 - -0.8 141,326 - -0.6 141,335 - +0.3 141,335 - -0.4 141,379 + +1.5 141,387 + -0.3 141,388 - -0.7 141,433 + +0.1 141,434 - -0.2 141,434 - +0.1 141,434 - -0.4 141,434 - +0.5 141,487 + -1.5 141,610 - BACOVA_04790 0.62 -0.0 141,631 - BACOVA_04790 0.73 +0.9 141,678 + -0.3 141,678 + +0.4 141,923 + +1.8 141,943 + -0.6 141,944 - -0.3 141,944 - -0.6 141,944 - +0.7 141,944 - -0.4 141,945 + +0.3 141,945 + -0.3 141,948 + +0.1 141,967 - BACOVA_04791 0.10 +0.3 142,030 + BACOVA_04791 0.13 +1.8 142,030 + BACOVA_04791 0.13 -0.9 142,030 + BACOVA_04791 0.13 +1.1 142,030 + BACOVA_04791 0.13 -0.5 142,031 - BACOVA_04791 0.13 +0.2 142,031 - BACOVA_04791 0.13 +1.2 142,131 + BACOVA_04791 0.16 -0.7 142,222 - BACOVA_04791 0.20 +1.4 142,276 + BACOVA_04791 0.22 +0.0 142,276 + BACOVA_04791 0.22 +1.8 142,277 - BACOVA_04791 0.22 -1.5 142,277 - BACOVA_04791 0.22 +0.0 142,278 + BACOVA_04791 0.22 +0.4 142,278 + BACOVA_04791 0.22 +1.4 142,415 - BACOVA_04791 0.27 -0.2 142,558 - BACOVA_04791 0.32 +0.3 142,585 + BACOVA_04791 0.33 +0.0 142,617 + BACOVA_04791 0.34 +0.0
Or see this region's nucleotide sequence