Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04276 and BACOVA_04277 are separated by 110 nucleotides BACOVA_04277 and BACOVA_04278 are separated by 2 nucleotides BACOVA_04278 and BACOVA_04279 are separated by 88 nucleotides BACOVA_04279 and BACOVA_04280 are separated by 99 nucleotides
BACOVA_04276: BACOVA_04276 - mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase, at 164,020 to 164,925
_04276
BACOVA_04277: BACOVA_04277 - putative cytidine deaminase, at 165,036 to 165,518
_04277
BACOVA_04278: BACOVA_04278 - transcriptional regulator, AraC family, at 165,521 to 166,360
_04278
BACOVA_04279: BACOVA_04279 - hypothetical protein, at 166,449 to 167,030
_04279
BACOVA_04280: BACOVA_04280 - pyridine nucleotide-disulfide oxidoreductase, at 167,130 to 168,503
_04280
Position (kb) 165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 164.529 kb on + strand, within BACOVA_04276 at 164.591 kb on + strand, within BACOVA_04276 at 164.611 kb on - strand, within BACOVA_04276 at 164.613 kb on - strand, within BACOVA_04276 at 164.613 kb on - strand, within BACOVA_04276 at 164.613 kb on - strand, within BACOVA_04276 at 164.686 kb on - strand, within BACOVA_04276 at 164.764 kb on - strand, within BACOVA_04276 at 164.816 kb on + strand, within BACOVA_04276 at 164.816 kb on + strand, within BACOVA_04276 at 164.816 kb on + strand, within BACOVA_04276 at 164.820 kb on + strand, within BACOVA_04276 at 164.820 kb on + strand, within BACOVA_04276 at 164.821 kb on - strand, within BACOVA_04276 at 164.825 kb on - strand, within BACOVA_04276 at 164.907 kb on + strand at 164.908 kb on - strand at 164.945 kb on - strand at 164.978 kb on + strand at 164.979 kb on - strand at 165.007 kb on + strand at 165.008 kb on - strand at 165.008 kb on - strand at 165.028 kb on + strand at 165.033 kb on + strand at 165.033 kb on + strand at 165.033 kb on + strand at 165.034 kb on - strand at 165.034 kb on - strand at 165.035 kb on + strand at 165.053 kb on + strand at 165.060 kb on - strand at 165.062 kb on + strand at 165.065 kb on + strand at 165.066 kb on - strand at 165.071 kb on - strand at 165.072 kb on + strand at 165.079 kb on - strand at 165.079 kb on - strand at 165.110 kb on + strand, within BACOVA_04277 at 165.144 kb on + strand, within BACOVA_04277 at 165.202 kb on + strand, within BACOVA_04277 at 165.202 kb on + strand, within BACOVA_04277 at 165.260 kb on + strand, within BACOVA_04277 at 165.260 kb on + strand, within BACOVA_04277 at 165.261 kb on - strand, within BACOVA_04277 at 165.261 kb on - strand, within BACOVA_04277 at 165.263 kb on + strand, within BACOVA_04277 at 165.269 kb on - strand, within BACOVA_04277 at 165.269 kb on - strand, within BACOVA_04277 at 165.269 kb on - strand, within BACOVA_04277 at 165.409 kb on - strand, within BACOVA_04277 at 165.433 kb on + strand, within BACOVA_04277 at 165.433 kb on + strand, within BACOVA_04277 at 165.434 kb on - strand, within BACOVA_04277 at 165.453 kb on + strand, within BACOVA_04277 at 165.460 kb on + strand, within BACOVA_04277 at 165.468 kb on - strand, within BACOVA_04277 at 165.520 kb on + strand at 165.520 kb on + strand at 165.520 kb on + strand at 165.533 kb on + strand at 165.547 kb on - strand at 165.566 kb on - strand at 165.566 kb on - strand at 165.575 kb on + strand at 165.575 kb on + strand at 165.624 kb on + strand, within BACOVA_04278 at 165.631 kb on - strand, within BACOVA_04278 at 165.646 kb on + strand, within BACOVA_04278 at 165.652 kb on - strand, within BACOVA_04278 at 165.875 kb on - strand, within BACOVA_04278 at 165.916 kb on + strand, within BACOVA_04278 at 165.917 kb on - strand, within BACOVA_04278 at 165.948 kb on + strand, within BACOVA_04278 at 165.982 kb on + strand, within BACOVA_04278 at 166.058 kb on - strand, within BACOVA_04278 at 166.226 kb on + strand, within BACOVA_04278 at 166.259 kb on - strand, within BACOVA_04278 at 166.327 kb on - strand at 166.376 kb on + strand at 166.383 kb on - strand at 166.420 kb on + strand at 166.421 kb on - strand at 166.421 kb on - strand at 166.421 kb on - strand at 166.426 kb on - strand at 166.435 kb on - strand at 166.471 kb on + strand at 166.472 kb on - strand at 166.472 kb on - strand at 166.512 kb on - strand, within BACOVA_04279 at 166.534 kb on + strand, within BACOVA_04279 at 166.537 kb on + strand, within BACOVA_04279 at 166.544 kb on - strand, within BACOVA_04279 at 166.563 kb on + strand, within BACOVA_04279 at 166.572 kb on + strand, within BACOVA_04279 at 166.629 kb on + strand, within BACOVA_04279 at 166.630 kb on - strand, within BACOVA_04279 at 166.722 kb on + strand, within BACOVA_04279 at 166.723 kb on - strand, within BACOVA_04279 at 166.723 kb on - strand, within BACOVA_04279 at 166.723 kb on - strand, within BACOVA_04279 at 166.724 kb on + strand, within BACOVA_04279 at 166.734 kb on + strand, within BACOVA_04279 at 166.752 kb on - strand, within BACOVA_04279 at 166.752 kb on - strand, within BACOVA_04279 at 166.752 kb on - strand, within BACOVA_04279 at 166.752 kb on - strand, within BACOVA_04279 at 166.752 kb on - strand, within BACOVA_04279 at 166.775 kb on - strand, within BACOVA_04279 at 166.829 kb on + strand, within BACOVA_04279 at 166.918 kb on + strand, within BACOVA_04279 at 166.919 kb on - strand, within BACOVA_04279 at 166.982 kb on - strand at 167.019 kb on - strand at 167.028 kb on + strand at 167.041 kb on - strand at 167.096 kb on + strand at 167.097 kb on - strand at 167.098 kb on + strand at 167.098 kb on + strand at 167.098 kb on + strand at 167.106 kb on + strand at 167.129 kb on + strand at 167.139 kb on + strand at 167.150 kb on + strand at 167.156 kb on - strand at 167.156 kb on - strand at 167.244 kb on + strand at 167.244 kb on + strand at 167.244 kb on + strand at 167.245 kb on - strand at 167.245 kb on - strand at 167.245 kb on - strand at 167.266 kb on + strand at 167.274 kb on - strand, within BACOVA_04280 at 167.351 kb on + strand, within BACOVA_04280 at 167.355 kb on + strand, within BACOVA_04280 at 167.356 kb on - strand, within BACOVA_04280 at 167.356 kb on - strand, within BACOVA_04280 at 167.356 kb on - strand, within BACOVA_04280
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 164,529 + BACOVA_04276 0.56 +1.5 164,591 + BACOVA_04276 0.63 -0.5 164,611 - BACOVA_04276 0.65 -0.8 164,613 - BACOVA_04276 0.65 -1.2 164,613 - BACOVA_04276 0.65 -1.1 164,613 - BACOVA_04276 0.65 +1.3 164,686 - BACOVA_04276 0.74 -1.0 164,764 - BACOVA_04276 0.82 -2.0 164,816 + BACOVA_04276 0.88 -1.4 164,816 + BACOVA_04276 0.88 -2.5 164,816 + BACOVA_04276 0.88 +0.2 164,820 + BACOVA_04276 0.88 -1.8 164,820 + BACOVA_04276 0.88 -1.7 164,821 - BACOVA_04276 0.88 +0.4 164,825 - BACOVA_04276 0.89 +0.2 164,907 + +1.0 164,908 - +0.7 164,945 - +0.6 164,978 + -0.7 164,979 - -0.0 165,007 + +0.3 165,008 - -2.3 165,008 - -0.3 165,028 + -1.6 165,033 + -1.0 165,033 + -0.9 165,033 + -0.2 165,034 - -1.0 165,034 - -0.5 165,035 + -0.9 165,053 + -1.9 165,060 - -1.3 165,062 + +0.8 165,065 + -1.0 165,066 - -2.5 165,071 - -1.7 165,072 + -0.1 165,079 - -0.8 165,079 - -2.1 165,110 + BACOVA_04277 0.15 -1.7 165,144 + BACOVA_04277 0.22 -0.6 165,202 + BACOVA_04277 0.34 -0.9 165,202 + BACOVA_04277 0.34 -0.1 165,260 + BACOVA_04277 0.46 +0.6 165,260 + BACOVA_04277 0.46 +0.0 165,261 - BACOVA_04277 0.47 -0.5 165,261 - BACOVA_04277 0.47 -3.1 165,263 + BACOVA_04277 0.47 -1.8 165,269 - BACOVA_04277 0.48 -0.0 165,269 - BACOVA_04277 0.48 -1.6 165,269 - BACOVA_04277 0.48 +0.2 165,409 - BACOVA_04277 0.77 -2.3 165,433 + BACOVA_04277 0.82 -1.0 165,433 + BACOVA_04277 0.82 -1.8 165,434 - BACOVA_04277 0.82 -0.3 165,453 + BACOVA_04277 0.86 -2.1 165,460 + BACOVA_04277 0.88 -1.2 165,468 - BACOVA_04277 0.89 +0.8 165,520 + -2.5 165,520 + -0.7 165,520 + +0.1 165,533 + +0.6 165,547 - -0.4 165,566 - +1.0 165,566 - +0.1 165,575 + -0.2 165,575 + +0.2 165,624 + BACOVA_04278 0.12 -1.3 165,631 - BACOVA_04278 0.13 -0.4 165,646 + BACOVA_04278 0.15 -0.4 165,652 - BACOVA_04278 0.16 +0.2 165,875 - BACOVA_04278 0.42 +0.5 165,916 + BACOVA_04278 0.47 +0.5 165,917 - BACOVA_04278 0.47 -0.3 165,948 + BACOVA_04278 0.51 -1.3 165,982 + BACOVA_04278 0.55 -0.8 166,058 - BACOVA_04278 0.64 -1.6 166,226 + BACOVA_04278 0.84 -0.8 166,259 - BACOVA_04278 0.88 +0.3 166,327 - -0.3 166,376 + +1.2 166,383 - +0.8 166,420 + -1.2 166,421 - +0.8 166,421 - +2.3 166,421 - -0.4 166,426 - -1.3 166,435 - -0.4 166,471 + -1.7 166,472 - -1.6 166,472 - +0.4 166,512 - BACOVA_04279 0.11 +0.4 166,534 + BACOVA_04279 0.15 -1.2 166,537 + BACOVA_04279 0.15 -0.3 166,544 - BACOVA_04279 0.16 +0.7 166,563 + BACOVA_04279 0.20 +0.6 166,572 + BACOVA_04279 0.21 +0.2 166,629 + BACOVA_04279 0.31 +1.3 166,630 - BACOVA_04279 0.31 -0.9 166,722 + BACOVA_04279 0.47 +0.0 166,723 - BACOVA_04279 0.47 +0.5 166,723 - BACOVA_04279 0.47 +1.3 166,723 - BACOVA_04279 0.47 -1.3 166,724 + BACOVA_04279 0.47 -0.1 166,734 + BACOVA_04279 0.49 +0.2 166,752 - BACOVA_04279 0.52 -0.2 166,752 - BACOVA_04279 0.52 +0.4 166,752 - BACOVA_04279 0.52 -0.5 166,752 - BACOVA_04279 0.52 -0.1 166,752 - BACOVA_04279 0.52 +0.1 166,775 - BACOVA_04279 0.56 -0.1 166,829 + BACOVA_04279 0.65 -0.2 166,918 + BACOVA_04279 0.81 +0.8 166,919 - BACOVA_04279 0.81 -0.2 166,982 - -0.2 167,019 - +0.6 167,028 + +0.6 167,041 - +1.8 167,096 + -0.3 167,097 - +1.0 167,098 + +0.6 167,098 + -0.2 167,098 + +1.0 167,106 + -0.8 167,129 + -0.1 167,139 + -0.5 167,150 + +0.7 167,156 - +0.6 167,156 - +0.6 167,244 + +0.2 167,244 + -0.2 167,244 + -0.3 167,245 - +0.1 167,245 - -0.4 167,245 - -0.3 167,266 + +1.5 167,274 - BACOVA_04280 0.10 -0.6 167,351 + BACOVA_04280 0.16 -1.4 167,355 + BACOVA_04280 0.16 -0.8 167,356 - BACOVA_04280 0.16 -1.5 167,356 - BACOVA_04280 0.16 -1.7 167,356 - BACOVA_04280 0.16 -2.3
Or see this region's nucleotide sequence