Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03438 and BACOVA_03439 overlap by 4 nucleotides BACOVA_03439 and BACOVA_03440 are separated by 43 nucleotides BACOVA_03440 and BACOVA_03441 are separated by 218 nucleotides
BACOVA_03438: BACOVA_03438 - hypothetical protein, at 170,682 to 173,117
_03438
BACOVA_03439: BACOVA_03439 - hypothetical protein, at 173,114 to 173,284
_03439
BACOVA_03440: BACOVA_03440 - hypothetical protein, at 173,328 to 173,795
_03440
BACOVA_03441: BACOVA_03441 - response regulator receiver domain protein, at 174,014 to 177,979
_03441
Position (kb) 173
174 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 172.115 kb on - strand, within BACOVA_03438 at 172.125 kb on + strand, within BACOVA_03438 at 172.125 kb on + strand, within BACOVA_03438 at 172.241 kb on + strand, within BACOVA_03438 at 172.243 kb on + strand, within BACOVA_03438 at 172.244 kb on - strand, within BACOVA_03438 at 172.253 kb on + strand, within BACOVA_03438 at 172.282 kb on - strand, within BACOVA_03438 at 172.282 kb on - strand, within BACOVA_03438 at 172.303 kb on + strand, within BACOVA_03438 at 172.350 kb on + strand, within BACOVA_03438 at 172.354 kb on + strand, within BACOVA_03438 at 172.355 kb on - strand, within BACOVA_03438 at 172.372 kb on - strand, within BACOVA_03438 at 172.372 kb on - strand, within BACOVA_03438 at 172.373 kb on + strand, within BACOVA_03438 at 172.374 kb on - strand, within BACOVA_03438 at 172.374 kb on - strand, within BACOVA_03438 at 172.374 kb on - strand, within BACOVA_03438 at 172.375 kb on + strand, within BACOVA_03438 at 172.376 kb on - strand, within BACOVA_03438 at 172.376 kb on - strand, within BACOVA_03438 at 172.447 kb on - strand, within BACOVA_03438 at 172.544 kb on + strand, within BACOVA_03438 at 172.544 kb on + strand, within BACOVA_03438 at 172.544 kb on + strand, within BACOVA_03438 at 172.544 kb on + strand, within BACOVA_03438 at 172.544 kb on + strand, within BACOVA_03438 at 172.545 kb on - strand, within BACOVA_03438 at 172.562 kb on + strand, within BACOVA_03438 at 172.563 kb on - strand, within BACOVA_03438 at 172.563 kb on - strand, within BACOVA_03438 at 172.563 kb on - strand, within BACOVA_03438 at 172.563 kb on - strand, within BACOVA_03438 at 172.564 kb on + strand, within BACOVA_03438 at 172.607 kb on + strand, within BACOVA_03438 at 172.608 kb on - strand, within BACOVA_03438 at 172.613 kb on + strand, within BACOVA_03438 at 172.613 kb on + strand, within BACOVA_03438 at 172.614 kb on - strand, within BACOVA_03438 at 172.614 kb on - strand, within BACOVA_03438 at 172.614 kb on - strand, within BACOVA_03438 at 172.616 kb on + strand, within BACOVA_03438 at 172.656 kb on - strand, within BACOVA_03438 at 172.657 kb on + strand, within BACOVA_03438 at 172.657 kb on + strand, within BACOVA_03438 at 172.658 kb on - strand, within BACOVA_03438 at 172.760 kb on - strand, within BACOVA_03438 at 172.767 kb on - strand, within BACOVA_03438 at 172.770 kb on + strand, within BACOVA_03438 at 172.770 kb on + strand, within BACOVA_03438 at 172.771 kb on - strand, within BACOVA_03438 at 172.771 kb on - strand, within BACOVA_03438 at 172.866 kb on + strand, within BACOVA_03438 at 172.867 kb on - strand, within BACOVA_03438 at 172.884 kb on + strand at 172.899 kb on - strand at 172.902 kb on - strand at 172.904 kb on + strand at 172.904 kb on + strand at 172.905 kb on - strand at 172.909 kb on + strand at 172.973 kb on - strand at 172.975 kb on - strand at 173.004 kb on - strand at 173.039 kb on + strand at 173.039 kb on + strand at 173.040 kb on - strand at 173.042 kb on - strand at 173.042 kb on - strand at 173.079 kb on + strand at 173.079 kb on + strand at 173.079 kb on + strand at 173.079 kb on + strand at 173.079 kb on + strand at 173.080 kb on - strand at 173.080 kb on - strand at 173.080 kb on - strand at 173.117 kb on + strand at 173.118 kb on - strand at 173.120 kb on + strand at 173.122 kb on + strand at 173.122 kb on + strand at 173.141 kb on + strand, within BACOVA_03439 at 173.157 kb on - strand, within BACOVA_03439 at 173.187 kb on - strand, within BACOVA_03439 at 173.197 kb on + strand, within BACOVA_03439 at 173.213 kb on + strand, within BACOVA_03439 at 173.220 kb on - strand, within BACOVA_03439 at 173.225 kb on + strand, within BACOVA_03439 at 173.226 kb on - strand, within BACOVA_03439 at 173.227 kb on + strand, within BACOVA_03439 at 173.227 kb on + strand, within BACOVA_03439 at 173.227 kb on + strand, within BACOVA_03439 at 173.228 kb on - strand, within BACOVA_03439 at 173.228 kb on - strand, within BACOVA_03439 at 173.229 kb on + strand, within BACOVA_03439 at 173.230 kb on - strand, within BACOVA_03439 at 173.237 kb on - strand, within BACOVA_03439 at 173.293 kb on - strand at 173.299 kb on + strand at 173.314 kb on + strand at 173.317 kb on - strand at 173.323 kb on - strand at 173.325 kb on - strand at 173.344 kb on - strand at 173.349 kb on + strand at 173.447 kb on + strand, within BACOVA_03440 at 173.468 kb on - strand, within BACOVA_03440 at 173.471 kb on - strand, within BACOVA_03440 at 173.483 kb on + strand, within BACOVA_03440 at 173.486 kb on - strand, within BACOVA_03440 at 173.505 kb on + strand, within BACOVA_03440 at 173.526 kb on - strand, within BACOVA_03440 at 173.527 kb on + strand, within BACOVA_03440 at 173.528 kb on - strand, within BACOVA_03440 at 173.532 kb on + strand, within BACOVA_03440 at 173.533 kb on - strand, within BACOVA_03440 at 173.611 kb on + strand, within BACOVA_03440 at 173.615 kb on + strand, within BACOVA_03440 at 173.616 kb on - strand, within BACOVA_03440 at 173.616 kb on - strand, within BACOVA_03440 at 173.621 kb on - strand, within BACOVA_03440 at 173.621 kb on - strand, within BACOVA_03440 at 173.664 kb on + strand, within BACOVA_03440 at 173.679 kb on + strand, within BACOVA_03440 at 173.680 kb on - strand, within BACOVA_03440 at 173.680 kb on - strand, within BACOVA_03440 at 173.680 kb on - strand, within BACOVA_03440 at 173.690 kb on + strand, within BACOVA_03440 at 173.691 kb on - strand, within BACOVA_03440 at 173.691 kb on - strand, within BACOVA_03440 at 173.691 kb on - strand, within BACOVA_03440 at 173.731 kb on - strand, within BACOVA_03440 at 173.749 kb on - strand at 173.769 kb on + strand at 173.769 kb on + strand at 173.769 kb on + strand at 173.779 kb on - strand at 173.782 kb on - strand at 173.785 kb on + strand at 173.799 kb on - strand at 173.809 kb on - strand at 173.828 kb on - strand at 173.846 kb on + strand at 173.852 kb on - strand at 173.956 kb on + strand at 173.957 kb on - strand at 173.994 kb on + strand at 174.028 kb on - strand at 174.028 kb on - strand at 174.080 kb on - strand at 174.089 kb on + strand at 174.140 kb on - strand at 174.151 kb on + strand at 174.151 kb on + strand at 174.152 kb on - strand at 174.152 kb on - strand at 174.195 kb on + strand at 174.209 kb on + strand at 174.210 kb on + strand at 174.210 kb on - strand at 174.212 kb on + strand at 174.212 kb on + strand at 174.213 kb on - strand at 174.214 kb on + strand at 174.215 kb on - strand at 174.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 172,115 - BACOVA_03438 0.59 -0.4 172,125 + BACOVA_03438 0.59 -0.6 172,125 + BACOVA_03438 0.59 -2.3 172,241 + BACOVA_03438 0.64 +0.0 172,243 + BACOVA_03438 0.64 -0.8 172,244 - BACOVA_03438 0.64 -0.3 172,253 + BACOVA_03438 0.64 +0.4 172,282 - BACOVA_03438 0.66 +1.6 172,282 - BACOVA_03438 0.66 -0.3 172,303 + BACOVA_03438 0.67 +1.6 172,350 + BACOVA_03438 0.68 -1.8 172,354 + BACOVA_03438 0.69 -0.2 172,355 - BACOVA_03438 0.69 -0.2 172,372 - BACOVA_03438 0.69 +2.6 172,372 - BACOVA_03438 0.69 +0.2 172,373 + BACOVA_03438 0.69 +0.2 172,374 - BACOVA_03438 0.69 +0.4 172,374 - BACOVA_03438 0.69 +1.1 172,374 - BACOVA_03438 0.69 +0.5 172,375 + BACOVA_03438 0.69 -2.1 172,376 - BACOVA_03438 0.70 +0.1 172,376 - BACOVA_03438 0.70 +0.1 172,447 - BACOVA_03438 0.72 +0.6 172,544 + BACOVA_03438 0.76 -1.3 172,544 + BACOVA_03438 0.76 +0.4 172,544 + BACOVA_03438 0.76 -0.5 172,544 + BACOVA_03438 0.76 -0.0 172,544 + BACOVA_03438 0.76 -0.9 172,545 - BACOVA_03438 0.76 -0.1 172,562 + BACOVA_03438 0.77 -0.6 172,563 - BACOVA_03438 0.77 -1.1 172,563 - BACOVA_03438 0.77 -0.3 172,563 - BACOVA_03438 0.77 +0.3 172,563 - BACOVA_03438 0.77 -0.8 172,564 + BACOVA_03438 0.77 +0.0 172,607 + BACOVA_03438 0.79 +0.8 172,608 - BACOVA_03438 0.79 -0.5 172,613 + BACOVA_03438 0.79 -1.1 172,613 + BACOVA_03438 0.79 +1.2 172,614 - BACOVA_03438 0.79 +0.0 172,614 - BACOVA_03438 0.79 +0.6 172,614 - BACOVA_03438 0.79 -0.2 172,616 + BACOVA_03438 0.79 -0.1 172,656 - BACOVA_03438 0.81 -0.6 172,657 + BACOVA_03438 0.81 -0.3 172,657 + BACOVA_03438 0.81 -0.3 172,658 - BACOVA_03438 0.81 -0.8 172,760 - BACOVA_03438 0.85 +0.4 172,767 - BACOVA_03438 0.86 +2.5 172,770 + BACOVA_03438 0.86 -0.5 172,770 + BACOVA_03438 0.86 +0.9 172,771 - BACOVA_03438 0.86 -0.2 172,771 - BACOVA_03438 0.86 -0.1 172,866 + BACOVA_03438 0.90 -1.9 172,867 - BACOVA_03438 0.90 +0.0 172,884 + -1.2 172,899 - +1.2 172,902 - -0.6 172,904 + -0.1 172,904 + -0.3 172,905 - +0.6 172,909 + +0.4 172,973 - +1.5 172,975 - +0.0 173,004 - -0.2 173,039 + +0.0 173,039 + +0.4 173,040 - -0.8 173,042 - -0.5 173,042 - +0.1 173,079 + +0.2 173,079 + +0.9 173,079 + -0.5 173,079 + +0.7 173,079 + +0.1 173,080 - -1.4 173,080 - +0.2 173,080 - -0.1 173,117 + -0.8 173,118 - -0.0 173,120 + +0.2 173,122 + -0.1 173,122 + -0.1 173,141 + BACOVA_03439 0.16 +0.6 173,157 - BACOVA_03439 0.25 -0.5 173,187 - BACOVA_03439 0.43 -0.4 173,197 + BACOVA_03439 0.49 -0.1 173,213 + BACOVA_03439 0.58 +0.7 173,220 - BACOVA_03439 0.62 -0.5 173,225 + BACOVA_03439 0.65 +0.7 173,226 - BACOVA_03439 0.65 +0.1 173,227 + BACOVA_03439 0.66 +1.1 173,227 + BACOVA_03439 0.66 +1.1 173,227 + BACOVA_03439 0.66 +1.7 173,228 - BACOVA_03439 0.67 +1.1 173,228 - BACOVA_03439 0.67 +0.4 173,229 + BACOVA_03439 0.67 +0.5 173,230 - BACOVA_03439 0.68 +1.4 173,237 - BACOVA_03439 0.72 +0.5 173,293 - -1.2 173,299 + +0.1 173,314 + -0.4 173,317 - -0.3 173,323 - +2.4 173,325 - -0.4 173,344 - +0.4 173,349 + -0.4 173,447 + BACOVA_03440 0.25 +0.4 173,468 - BACOVA_03440 0.30 +1.1 173,471 - BACOVA_03440 0.31 -0.0 173,483 + BACOVA_03440 0.33 +0.4 173,486 - BACOVA_03440 0.34 -0.8 173,505 + BACOVA_03440 0.38 +0.7 173,526 - BACOVA_03440 0.42 -0.3 173,527 + BACOVA_03440 0.43 -1.4 173,528 - BACOVA_03440 0.43 +0.5 173,532 + BACOVA_03440 0.44 +0.2 173,533 - BACOVA_03440 0.44 +0.2 173,611 + BACOVA_03440 0.60 -0.9 173,615 + BACOVA_03440 0.61 +0.5 173,616 - BACOVA_03440 0.62 +0.1 173,616 - BACOVA_03440 0.62 -0.2 173,621 - BACOVA_03440 0.63 +2.1 173,621 - BACOVA_03440 0.63 -0.1 173,664 + BACOVA_03440 0.72 -0.7 173,679 + BACOVA_03440 0.75 -0.3 173,680 - BACOVA_03440 0.75 -0.3 173,680 - BACOVA_03440 0.75 +0.9 173,680 - BACOVA_03440 0.75 +0.2 173,690 + BACOVA_03440 0.77 +0.5 173,691 - BACOVA_03440 0.78 +1.3 173,691 - BACOVA_03440 0.78 +0.9 173,691 - BACOVA_03440 0.78 -0.4 173,731 - BACOVA_03440 0.86 +1.0 173,749 - -0.1 173,769 + +0.2 173,769 + -0.1 173,769 + -0.4 173,779 - -0.5 173,782 - -0.5 173,785 + -0.1 173,799 - -0.7 173,809 - +1.4 173,828 - +0.5 173,846 + +0.0 173,852 - -0.5 173,956 + -0.3 173,957 - -1.4 173,994 + -0.0 174,028 - -1.0 174,028 - -0.2 174,080 - +2.9 174,089 + -1.3 174,140 - +0.6 174,151 + -0.5 174,151 + +0.5 174,152 - +0.4 174,152 - +2.9 174,195 + -0.5 174,209 + -0.5 174,210 + +0.3 174,210 - -0.6 174,212 + -1.1 174,212 + +0.4 174,213 - -0.3 174,214 + -0.3 174,215 - -0.1 174,230 - +0.1
Or see this region's nucleotide sequence