Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03051

Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03049 and BACOVA_03050 are separated by 103 nucleotidesBACOVA_03050 and BACOVA_03051 are separated by 38 nucleotidesBACOVA_03051 and BACOVA_03053 are separated by 53 nucleotidesBACOVA_03053 and BACOVA_03052 overlap by 27 nucleotidesBACOVA_03052 and BACOVA_03054 are separated by 51 nucleotides BACOVA_03049: BACOVA_03049 - transporter, CPA2 family, at 119,723 to 121,855 _03049 BACOVA_03050: BACOVA_03050 - hypothetical protein, at 121,959 to 122,075 _03050 BACOVA_03051: BACOVA_03051 - hypothetical protein, at 122,114 to 122,500 _03051 BACOVA_03053: BACOVA_03053 - cyclic nucleotide-binding domain protein, at 122,554 to 123,141 _03053 BACOVA_03052: BACOVA_03052 - hypothetical protein, at 123,115 to 123,228 _03052 BACOVA_03054: BACOVA_03054 - multidrug resistance protein, SMR family, at 123,280 to 123,600 _03054 Position (kb) 122 123Strain fitness (log2 ratio) -2 -1 0 1 2at 121.126 kb on + strand, within BACOVA_03049at 121.243 kb on - strand, within BACOVA_03049at 121.246 kb on + strand, within BACOVA_03049at 121.250 kb on + strand, within BACOVA_03049at 121.274 kb on + strand, within BACOVA_03049at 121.328 kb on + strand, within BACOVA_03049at 121.329 kb on - strand, within BACOVA_03049at 121.387 kb on + strand, within BACOVA_03049at 121.387 kb on + strand, within BACOVA_03049at 121.388 kb on - strand, within BACOVA_03049at 121.391 kb on + strand, within BACOVA_03049at 121.458 kb on + strand, within BACOVA_03049at 121.458 kb on + strand, within BACOVA_03049at 121.459 kb on - strand, within BACOVA_03049at 121.459 kb on - strand, within BACOVA_03049at 121.470 kb on - strand, within BACOVA_03049at 121.473 kb on - strand, within BACOVA_03049at 121.473 kb on - strand, within BACOVA_03049at 121.488 kb on - strand, within BACOVA_03049at 121.488 kb on - strand, within BACOVA_03049at 121.495 kb on - strand, within BACOVA_03049at 121.503 kb on + strand, within BACOVA_03049at 121.543 kb on + strand, within BACOVA_03049at 121.574 kb on - strand, within BACOVA_03049at 121.601 kb on - strand, within BACOVA_03049at 121.601 kb on - strand, within BACOVA_03049at 121.632 kb on + strand, within BACOVA_03049at 121.633 kb on - strand, within BACOVA_03049at 121.633 kb on - strand, within BACOVA_03049at 121.633 kb on - strand, within BACOVA_03049at 121.688 kb on - strandat 121.760 kb on + strandat 121.760 kb on + strandat 121.760 kb on + strandat 121.781 kb on - strandat 121.784 kb on + strandat 121.790 kb on + strandat 121.791 kb on - strandat 121.811 kb on - strandat 121.819 kb on + strandat 121.822 kb on + strandat 121.823 kb on - strandat 121.823 kb on - strandat 121.833 kb on - strandat 121.833 kb on - strandat 121.920 kb on + strandat 121.998 kb on + strand, within BACOVA_03050at 121.998 kb on + strand, within BACOVA_03050at 121.999 kb on - strand, within BACOVA_03050at 122.010 kb on + strand, within BACOVA_03050at 122.012 kb on + strand, within BACOVA_03050at 122.048 kb on + strand, within BACOVA_03050at 122.079 kb on + strandat 122.079 kb on + strandat 122.082 kb on + strandat 122.082 kb on + strandat 122.086 kb on - strandat 122.095 kb on + strandat 122.102 kb on - strandat 122.164 kb on + strand, within BACOVA_03051at 122.207 kb on - strand, within BACOVA_03051at 122.225 kb on + strand, within BACOVA_03051at 122.226 kb on - strand, within BACOVA_03051at 122.229 kb on + strand, within BACOVA_03051at 122.237 kb on + strand, within BACOVA_03051at 122.291 kb on + strand, within BACOVA_03051at 122.292 kb on - strand, within BACOVA_03051at 122.292 kb on - strand, within BACOVA_03051at 122.292 kb on - strand, within BACOVA_03051at 122.327 kb on - strand, within BACOVA_03051at 122.357 kb on + strand, within BACOVA_03051at 122.357 kb on + strand, within BACOVA_03051at 122.357 kb on + strand, within BACOVA_03051at 122.358 kb on - strand, within BACOVA_03051at 122.358 kb on - strand, within BACOVA_03051at 122.358 kb on - strand, within BACOVA_03051at 122.363 kb on - strand, within BACOVA_03051at 122.380 kb on + strand, within BACOVA_03051at 122.404 kb on + strand, within BACOVA_03051at 122.405 kb on - strand, within BACOVA_03051at 122.422 kb on + strand, within BACOVA_03051at 122.461 kb on + strand, within BACOVA_03051at 122.463 kb on + strandat 122.517 kb on + strandat 122.550 kb on + strandat 122.551 kb on - strandat 122.590 kb on + strandat 122.615 kb on + strand, within BACOVA_03053at 122.616 kb on - strand, within BACOVA_03053at 122.638 kb on + strand, within BACOVA_03053at 122.650 kb on + strand, within BACOVA_03053at 122.679 kb on + strand, within BACOVA_03053at 122.679 kb on + strand, within BACOVA_03053at 122.679 kb on + strand, within BACOVA_03053at 122.680 kb on - strand, within BACOVA_03053at 122.681 kb on + strand, within BACOVA_03053at 122.682 kb on - strand, within BACOVA_03053at 122.705 kb on - strand, within BACOVA_03053at 122.781 kb on + strand, within BACOVA_03053at 122.804 kb on - strand, within BACOVA_03053at 122.825 kb on + strand, within BACOVA_03053at 122.826 kb on - strand, within BACOVA_03053at 122.826 kb on - strand, within BACOVA_03053at 122.874 kb on + strand, within BACOVA_03053at 122.879 kb on - strand, within BACOVA_03053at 122.882 kb on + strand, within BACOVA_03053at 122.882 kb on + strand, within BACOVA_03053at 122.882 kb on + strand, within BACOVA_03053at 122.882 kb on + strand, within BACOVA_03053at 122.932 kb on + strand, within BACOVA_03053at 122.933 kb on - strand, within BACOVA_03053at 122.933 kb on - strand, within BACOVA_03053at 122.957 kb on + strand, within BACOVA_03053at 122.957 kb on + strand, within BACOVA_03053at 122.957 kb on + strand, within BACOVA_03053at 122.957 kb on + strand, within BACOVA_03053at 122.958 kb on - strand, within BACOVA_03053at 123.019 kb on + strand, within BACOVA_03053at 123.019 kb on + strand, within BACOVA_03053at 123.020 kb on - strand, within BACOVA_03053at 123.021 kb on + strand, within BACOVA_03053at 123.021 kb on + strand, within BACOVA_03053at 123.022 kb on - strand, within BACOVA_03053at 123.022 kb on - strand, within BACOVA_03053at 123.039 kb on - strand, within BACOVA_03053at 123.097 kb on + strandat 123.097 kb on + strandat 123.118 kb on + strandat 123.118 kb on + strandat 123.118 kb on + strandat 123.119 kb on - strandat 123.142 kb on + strand, within BACOVA_03052at 123.143 kb on - strand, within BACOVA_03052at 123.166 kb on - strand, within BACOVA_03052at 123.191 kb on + strand, within BACOVA_03052at 123.192 kb on - strand, within BACOVA_03052at 123.197 kb on + strand, within BACOVA_03052at 123.221 kb on + strandat 123.266 kb on + strandat 123.271 kb on + strandat 123.291 kb on + strandat 123.301 kb on - strandat 123.338 kb on + strand, within BACOVA_03054at 123.373 kb on + strand, within BACOVA_03054at 123.404 kb on + strand, within BACOVA_03054at 123.450 kb on + strand, within BACOVA_03054at 123.451 kb on - strand, within BACOVA_03054at 123.483 kb on - strand, within BACOVA_03054

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C)
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121,126 + BACOVA_03049 0.66 -0.3
121,243 - BACOVA_03049 0.71 +0.3
121,246 + BACOVA_03049 0.71 +0.6
121,250 + BACOVA_03049 0.72 -1.2
121,274 + BACOVA_03049 0.73 -1.0
121,328 + BACOVA_03049 0.75 +0.1
121,329 - BACOVA_03049 0.75 +0.0
121,387 + BACOVA_03049 0.78 -0.1
121,387 + BACOVA_03049 0.78 -0.5
121,388 - BACOVA_03049 0.78 -0.2
121,391 + BACOVA_03049 0.78 -1.0
121,458 + BACOVA_03049 0.81 +0.8
121,458 + BACOVA_03049 0.81 +0.2
121,459 - BACOVA_03049 0.81 +1.8
121,459 - BACOVA_03049 0.81 +0.0
121,470 - BACOVA_03049 0.82 -0.3
121,473 - BACOVA_03049 0.82 +1.6
121,473 - BACOVA_03049 0.82 -1.0
121,488 - BACOVA_03049 0.83 +0.7
121,488 - BACOVA_03049 0.83 -0.3
121,495 - BACOVA_03049 0.83 -1.4
121,503 + BACOVA_03049 0.83 -1.0
121,543 + BACOVA_03049 0.85 -0.9
121,574 - BACOVA_03049 0.87 +0.7
121,601 - BACOVA_03049 0.88 +0.1
121,601 - BACOVA_03049 0.88 -0.6
121,632 + BACOVA_03049 0.89 -0.3
121,633 - BACOVA_03049 0.90 +0.1
121,633 - BACOVA_03049 0.90 -0.1
121,633 - BACOVA_03049 0.90 +0.4
121,688 - +0.2
121,760 + +0.3
121,760 + +0.3
121,760 + -0.2
121,781 - -1.0
121,784 + -1.4
121,790 + -0.8
121,791 - -0.4
121,811 - +0.3
121,819 + +0.1
121,822 + -1.0
121,823 - -0.2
121,823 - -0.9
121,833 - -0.8
121,833 - +1.4
121,920 + +1.4
121,998 + BACOVA_03050 0.33 -0.8
121,998 + BACOVA_03050 0.33 -0.4
121,999 - BACOVA_03050 0.34 -0.1
122,010 + BACOVA_03050 0.44 +0.1
122,012 + BACOVA_03050 0.45 -1.0
122,048 + BACOVA_03050 0.76 -1.5
122,079 + -0.1
122,079 + -0.0
122,082 + +0.1
122,082 + +0.9
122,086 - -1.3
122,095 + -0.7
122,102 - +0.3
122,164 + BACOVA_03051 0.13 -0.2
122,207 - BACOVA_03051 0.24 +1.0
122,225 + BACOVA_03051 0.29 -0.5
122,226 - BACOVA_03051 0.29 +0.3
122,229 + BACOVA_03051 0.30 +0.5
122,237 + BACOVA_03051 0.32 +0.7
122,291 + BACOVA_03051 0.46 -0.6
122,292 - BACOVA_03051 0.46 +0.1
122,292 - BACOVA_03051 0.46 +0.2
122,292 - BACOVA_03051 0.46 -0.6
122,327 - BACOVA_03051 0.55 -0.0
122,357 + BACOVA_03051 0.63 -0.2
122,357 + BACOVA_03051 0.63 -0.2
122,357 + BACOVA_03051 0.63 -0.7
122,358 - BACOVA_03051 0.63 +0.7
122,358 - BACOVA_03051 0.63 +1.5
122,358 - BACOVA_03051 0.63 -0.8
122,363 - BACOVA_03051 0.64 +1.0
122,380 + BACOVA_03051 0.69 -1.1
122,404 + BACOVA_03051 0.75 -0.2
122,405 - BACOVA_03051 0.75 +0.2
122,422 + BACOVA_03051 0.80 -0.3
122,461 + BACOVA_03051 0.90 +0.5
122,463 + -0.7
122,517 + +0.4
122,550 + -1.0
122,551 - +0.0
122,590 + -0.4
122,615 + BACOVA_03053 0.10 +0.3
122,616 - BACOVA_03053 0.11 +1.1
122,638 + BACOVA_03053 0.14 -0.3
122,650 + BACOVA_03053 0.16 -0.3
122,679 + BACOVA_03053 0.21 -1.5
122,679 + BACOVA_03053 0.21 +0.3
122,679 + BACOVA_03053 0.21 +1.0
122,680 - BACOVA_03053 0.21 +0.4
122,681 + BACOVA_03053 0.22 -0.7
122,682 - BACOVA_03053 0.22 +1.0
122,705 - BACOVA_03053 0.26 +0.2
122,781 + BACOVA_03053 0.39 -0.3
122,804 - BACOVA_03053 0.43 +1.6
122,825 + BACOVA_03053 0.46 -0.7
122,826 - BACOVA_03053 0.46 -0.2
122,826 - BACOVA_03053 0.46 -0.8
122,874 + BACOVA_03053 0.54 +0.3
122,879 - BACOVA_03053 0.55 -1.3
122,882 + BACOVA_03053 0.56 +1.0
122,882 + BACOVA_03053 0.56 -0.6
122,882 + BACOVA_03053 0.56 -0.5
122,882 + BACOVA_03053 0.56 +0.1
122,932 + BACOVA_03053 0.64 +1.2
122,933 - BACOVA_03053 0.64 -2.3
122,933 - BACOVA_03053 0.64 -0.5
122,957 + BACOVA_03053 0.69 -0.1
122,957 + BACOVA_03053 0.69 -1.2
122,957 + BACOVA_03053 0.69 -0.7
122,957 + BACOVA_03053 0.69 -0.1
122,958 - BACOVA_03053 0.69 -1.0
123,019 + BACOVA_03053 0.79 -0.7
123,019 + BACOVA_03053 0.79 -0.0
123,020 - BACOVA_03053 0.79 -0.3
123,021 + BACOVA_03053 0.79 -0.1
123,021 + BACOVA_03053 0.79 +0.8
123,022 - BACOVA_03053 0.80 +0.1
123,022 - BACOVA_03053 0.80 -1.0
123,039 - BACOVA_03053 0.82 +0.5
123,097 + -0.0
123,097 + +0.5
123,118 + -1.0
123,118 + +0.7
123,118 + -1.2
123,119 - +0.4
123,142 + BACOVA_03052 0.24 -0.5
123,143 - BACOVA_03052 0.25 -0.3
123,166 - BACOVA_03052 0.45 -0.5
123,191 + BACOVA_03052 0.67 -0.6
123,192 - BACOVA_03052 0.68 -0.4
123,197 + BACOVA_03052 0.72 -0.3
123,221 + -0.3
123,266 + -1.2
123,271 + +0.5
123,291 + +0.1
123,301 - -0.9
123,338 + BACOVA_03054 0.18 +0.5
123,373 + BACOVA_03054 0.29 +0.8
123,404 + BACOVA_03054 0.39 +2.1
123,450 + BACOVA_03054 0.53 -0.1
123,451 - BACOVA_03054 0.53 +0.0
123,483 - BACOVA_03054 0.63 -0.7

Or see this region's nucleotide sequence