Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01637 and BACOVA_01638 are separated by 29 nucleotides BACOVA_01638 and BACOVA_01639 are separated by 219 nucleotides BACOVA_01639 and BACOVA_01640 are separated by 556 nucleotides
BACOVA_01637: BACOVA_01637 - hypothetical protein, at 145,464 to 147,221
_01637
BACOVA_01638: BACOVA_01638 - DNA-binding helix-turn-helix protein, at 147,251 to 147,724
_01638
BACOVA_01639: BACOVA_01639 - hypothetical protein, at 147,944 to 148,207
_01639
BACOVA_01640: BACOVA_01640 - hypothetical protein, at 148,764 to 150,425
_01640
Position (kb) 147
148
149 Strain fitness (log2 ratio) -2
-1
0
1
2 at 146.991 kb on + strand, within BACOVA_01637 at 146.996 kb on - strand, within BACOVA_01637 at 147.043 kb on + strand, within BACOVA_01637 at 147.110 kb on - strand at 147.294 kb on - strand at 147.304 kb on - strand, within BACOVA_01638 at 147.359 kb on - strand, within BACOVA_01638 at 147.359 kb on - strand, within BACOVA_01638 at 147.383 kb on - strand, within BACOVA_01638 at 147.389 kb on - strand, within BACOVA_01638 at 147.389 kb on - strand, within BACOVA_01638 at 147.413 kb on - strand, within BACOVA_01638 at 147.416 kb on + strand, within BACOVA_01638 at 147.417 kb on - strand, within BACOVA_01638 at 147.417 kb on - strand, within BACOVA_01638 at 147.417 kb on - strand, within BACOVA_01638 at 147.417 kb on - strand, within BACOVA_01638 at 147.419 kb on - strand, within BACOVA_01638 at 147.473 kb on - strand, within BACOVA_01638 at 147.596 kb on - strand, within BACOVA_01638 at 147.620 kb on + strand, within BACOVA_01638 at 147.621 kb on - strand, within BACOVA_01638 at 147.621 kb on - strand, within BACOVA_01638 at 147.650 kb on - strand, within BACOVA_01638 at 147.668 kb on - strand, within BACOVA_01638 at 147.729 kb on - strand at 147.815 kb on - strand at 147.835 kb on + strand at 148.006 kb on + strand, within BACOVA_01639 at 148.010 kb on + strand, within BACOVA_01639 at 148.138 kb on - strand, within BACOVA_01639 at 148.170 kb on + strand, within BACOVA_01639 at 148.192 kb on + strand at 148.192 kb on + strand at 148.206 kb on - strand at 148.213 kb on + strand at 148.240 kb on + strand at 148.250 kb on - strand at 148.251 kb on + strand at 148.251 kb on + strand at 148.251 kb on + strand at 148.252 kb on - strand at 148.252 kb on - strand at 148.252 kb on - strand at 148.252 kb on - strand at 148.296 kb on - strand at 148.316 kb on + strand at 148.359 kb on + strand at 148.370 kb on - strand at 148.371 kb on + strand at 148.371 kb on + strand at 148.372 kb on - strand at 148.372 kb on - strand at 148.372 kb on - strand at 148.372 kb on - strand at 148.431 kb on - strand at 148.446 kb on + strand at 148.452 kb on - strand at 148.464 kb on - strand at 148.464 kb on - strand at 148.497 kb on + strand at 148.533 kb on + strand at 148.533 kb on + strand at 148.535 kb on + strand at 148.536 kb on - strand at 148.570 kb on + strand at 148.580 kb on - strand at 148.586 kb on - strand at 148.589 kb on - strand at 148.589 kb on - strand at 148.590 kb on + strand at 148.590 kb on + strand at 148.590 kb on + strand at 148.590 kb on + strand at 148.590 kb on + strand at 148.590 kb on + strand at 148.590 kb on + strand at 148.591 kb on - strand at 148.593 kb on - strand at 148.595 kb on + strand at 148.602 kb on - strand at 148.603 kb on + strand at 148.605 kb on + strand at 148.607 kb on + strand at 148.633 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 146,991 + BACOVA_01637 0.87 -0.1 146,996 - BACOVA_01637 0.87 -0.1 147,043 + BACOVA_01637 0.90 -0.0 147,110 - -2.6 147,294 - +0.1 147,304 - BACOVA_01638 0.11 +0.0 147,359 - BACOVA_01638 0.23 +0.8 147,359 - BACOVA_01638 0.23 +1.2 147,383 - BACOVA_01638 0.28 +0.6 147,389 - BACOVA_01638 0.29 +1.7 147,389 - BACOVA_01638 0.29 +0.9 147,413 - BACOVA_01638 0.34 -0.1 147,416 + BACOVA_01638 0.35 -0.4 147,417 - BACOVA_01638 0.35 -0.3 147,417 - BACOVA_01638 0.35 +0.7 147,417 - BACOVA_01638 0.35 +2.1 147,417 - BACOVA_01638 0.35 -1.0 147,419 - BACOVA_01638 0.35 +0.5 147,473 - BACOVA_01638 0.47 -0.2 147,596 - BACOVA_01638 0.73 +0.3 147,620 + BACOVA_01638 0.78 -0.1 147,621 - BACOVA_01638 0.78 -0.9 147,621 - BACOVA_01638 0.78 -0.7 147,650 - BACOVA_01638 0.84 +0.2 147,668 - BACOVA_01638 0.88 -0.3 147,729 - -0.4 147,815 - -0.2 147,835 + +0.3 148,006 + BACOVA_01639 0.23 +0.6 148,010 + BACOVA_01639 0.25 -1.1 148,138 - BACOVA_01639 0.73 -0.1 148,170 + BACOVA_01639 0.86 -0.2 148,192 + -0.9 148,192 + +0.2 148,206 - -0.8 148,213 + +1.9 148,240 + +1.0 148,250 - -1.9 148,251 + -0.2 148,251 + +0.1 148,251 + +0.2 148,252 - +1.1 148,252 - -1.6 148,252 - +0.5 148,252 - -0.4 148,296 - -0.0 148,316 + +1.4 148,359 + +0.5 148,370 - -0.7 148,371 + +0.6 148,371 + +1.2 148,372 - +0.0 148,372 - -2.7 148,372 - -0.2 148,372 - +0.9 148,431 - -1.6 148,446 + +0.1 148,452 - -0.3 148,464 - -0.3 148,464 - -1.8 148,497 + +0.4 148,533 + +0.9 148,533 + -1.3 148,535 + +0.7 148,536 - -1.6 148,570 + -0.7 148,580 - +1.0 148,586 - -0.4 148,589 - +0.1 148,589 - -1.1 148,590 + +0.8 148,590 + -0.1 148,590 + +0.5 148,590 + +1.0 148,590 + +0.1 148,590 + -0.9 148,590 + +1.9 148,591 - +0.4 148,593 - -2.0 148,595 + -1.1 148,602 - -2.5 148,603 + -0.6 148,605 + +1.4 148,607 + +0.6 148,633 + -1.0
Or see this region's nucleotide sequence