Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01163 and BACOVA_01164 are separated by 38 nucleotides BACOVA_01164 and BACOVA_01165 overlap by 8 nucleotides
BACOVA_01163: BACOVA_01163 - tetratricopeptide repeat protein, at 117,981 to 118,943
_01163
BACOVA_01164: BACOVA_01164 - ATP-dependent DNA helicase, RecQ family, at 118,982 to 120,892
_01164
BACOVA_01165: BACOVA_01165 - single-stranded-DNA-specific exonuclease RecJ, at 120,885 to 122,651
_01165
Position (kb)
118
119
120
121 Strain fitness (log2 ratio)
-2
-1
0
1 at 117.982 kb on + strand at 117.983 kb on - strand at 118.141 kb on + strand, within BACOVA_01163 at 118.220 kb on + strand, within BACOVA_01163 at 118.222 kb on + strand, within BACOVA_01163 at 118.238 kb on - strand, within BACOVA_01163 at 118.238 kb on - strand, within BACOVA_01163 at 118.238 kb on - strand, within BACOVA_01163 at 118.238 kb on - strand, within BACOVA_01163 at 118.243 kb on + strand, within BACOVA_01163 at 118.386 kb on + strand, within BACOVA_01163 at 118.386 kb on + strand, within BACOVA_01163 at 118.386 kb on + strand, within BACOVA_01163 at 118.387 kb on - strand, within BACOVA_01163 at 118.387 kb on - strand, within BACOVA_01163 at 118.389 kb on - strand, within BACOVA_01163 at 118.400 kb on + strand, within BACOVA_01163 at 118.406 kb on + strand, within BACOVA_01163 at 118.406 kb on + strand, within BACOVA_01163 at 118.407 kb on - strand, within BACOVA_01163 at 118.409 kb on - strand, within BACOVA_01163 at 118.409 kb on - strand, within BACOVA_01163 at 118.443 kb on + strand, within BACOVA_01163 at 118.547 kb on - strand, within BACOVA_01163 at 118.604 kb on + strand, within BACOVA_01163 at 118.605 kb on - strand, within BACOVA_01163 at 118.632 kb on + strand, within BACOVA_01163 at 118.632 kb on + strand, within BACOVA_01163 at 118.633 kb on - strand, within BACOVA_01163 at 118.677 kb on - strand, within BACOVA_01163 at 118.732 kb on + strand, within BACOVA_01163 at 118.732 kb on + strand, within BACOVA_01163 at 118.733 kb on - strand, within BACOVA_01163 at 118.733 kb on - strand, within BACOVA_01163 at 118.801 kb on - strand, within BACOVA_01163 at 118.808 kb on - strand, within BACOVA_01163 at 118.847 kb on - strand at 118.963 kb on - strand at 118.978 kb on + strand at 118.978 kb on + strand at 118.994 kb on - strand at 118.998 kb on - strand at 118.998 kb on - strand at 119.037 kb on - strand at 119.041 kb on - strand at 119.079 kb on - strand at 119.079 kb on - strand at 119.091 kb on - strand at 120.883 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 117,982 + -0.7 117,983 - -1.2 118,141 + BACOVA_01163 0.17 +0.3 118,220 + BACOVA_01163 0.25 -0.9 118,222 + BACOVA_01163 0.25 -0.2 118,238 - BACOVA_01163 0.27 -1.5 118,238 - BACOVA_01163 0.27 -0.1 118,238 - BACOVA_01163 0.27 -0.7 118,238 - BACOVA_01163 0.27 -0.2 118,243 + BACOVA_01163 0.27 +0.2 118,386 + BACOVA_01163 0.42 -0.8 118,386 + BACOVA_01163 0.42 -1.1 118,386 + BACOVA_01163 0.42 +0.5 118,387 - BACOVA_01163 0.42 +0.0 118,387 - BACOVA_01163 0.42 -1.1 118,389 - BACOVA_01163 0.42 +0.4 118,400 + BACOVA_01163 0.44 -0.2 118,406 + BACOVA_01163 0.44 -0.9 118,406 + BACOVA_01163 0.44 -0.8 118,407 - BACOVA_01163 0.44 +0.3 118,409 - BACOVA_01163 0.44 -0.1 118,409 - BACOVA_01163 0.44 +1.3 118,443 + BACOVA_01163 0.48 -2.0 118,547 - BACOVA_01163 0.59 -0.1 118,604 + BACOVA_01163 0.65 -0.2 118,605 - BACOVA_01163 0.65 -0.0 118,632 + BACOVA_01163 0.68 -0.2 118,632 + BACOVA_01163 0.68 -0.3 118,633 - BACOVA_01163 0.68 +0.4 118,677 - BACOVA_01163 0.72 -0.2 118,732 + BACOVA_01163 0.78 +1.0 118,732 + BACOVA_01163 0.78 -0.3 118,733 - BACOVA_01163 0.78 +0.8 118,733 - BACOVA_01163 0.78 +1.7 118,801 - BACOVA_01163 0.85 +1.2 118,808 - BACOVA_01163 0.86 +0.1 118,847 - +0.2 118,963 - +0.3 118,978 + -0.5 118,978 + -0.8 118,994 - +0.3 118,998 - -1.2 118,998 - +0.1 119,037 - -0.2 119,041 - -0.7 119,079 - +0.3 119,079 - -0.2 119,091 - -0.1 120,883 - -0.7
Or see this region's nucleotide sequence