Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01054 and BACOVA_01055 overlap by 4 nucleotides BACOVA_01055 and BACOVA_01056 are separated by 53 nucleotides BACOVA_01056 and BACOVA_01057 are separated by 14 nucleotides
BACOVA_01054: BACOVA_01054 - hypothetical protein, at 261,662 to 262,873
_01054
BACOVA_01055: BACOVA_01055 - hypothetical protein, at 262,870 to 264,504
_01055
BACOVA_01056: BACOVA_01056 - hypothetical protein, at 264,558 to 264,764
_01056
BACOVA_01057: BACOVA_01057 - hypothetical protein, at 264,779 to 266,002
_01057
Position (kb) 262
263
264
265 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 261.888 kb on + strand, within BACOVA_01054 at 261.888 kb on + strand, within BACOVA_01054 at 261.889 kb on - strand, within BACOVA_01054 at 261.899 kb on + strand, within BACOVA_01054 at 261.899 kb on + strand, within BACOVA_01054 at 261.900 kb on - strand, within BACOVA_01054 at 261.900 kb on - strand, within BACOVA_01054 at 261.900 kb on - strand, within BACOVA_01054 at 261.923 kb on - strand, within BACOVA_01054 at 261.923 kb on - strand, within BACOVA_01054 at 261.945 kb on - strand, within BACOVA_01054 at 261.957 kb on + strand, within BACOVA_01054 at 261.957 kb on + strand, within BACOVA_01054 at 261.957 kb on + strand, within BACOVA_01054 at 261.958 kb on - strand, within BACOVA_01054 at 261.991 kb on - strand, within BACOVA_01054 at 261.991 kb on - strand, within BACOVA_01054 at 262.034 kb on - strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.036 kb on - strand, within BACOVA_01054 at 262.085 kb on - strand, within BACOVA_01054 at 262.099 kb on + strand, within BACOVA_01054 at 262.105 kb on - strand, within BACOVA_01054 at 262.129 kb on + strand, within BACOVA_01054 at 262.134 kb on - strand, within BACOVA_01054 at 262.136 kb on + strand, within BACOVA_01054 at 262.136 kb on + strand, within BACOVA_01054 at 262.191 kb on - strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.226 kb on - strand, within BACOVA_01054 at 262.234 kb on + strand, within BACOVA_01054 at 262.235 kb on - strand, within BACOVA_01054 at 262.239 kb on - strand, within BACOVA_01054 at 262.276 kb on + strand, within BACOVA_01054 at 262.352 kb on + strand, within BACOVA_01054 at 262.388 kb on + strand, within BACOVA_01054 at 262.395 kb on + strand, within BACOVA_01054 at 262.398 kb on + strand, within BACOVA_01054 at 262.415 kb on + strand, within BACOVA_01054 at 262.450 kb on + strand, within BACOVA_01054 at 262.451 kb on - strand, within BACOVA_01054 at 262.452 kb on + strand, within BACOVA_01054 at 262.534 kb on - strand, within BACOVA_01054 at 262.537 kb on - strand, within BACOVA_01054 at 262.537 kb on - strand, within BACOVA_01054 at 262.642 kb on - strand, within BACOVA_01054 at 262.657 kb on + strand, within BACOVA_01054 at 262.658 kb on - strand, within BACOVA_01054 at 262.663 kb on - strand, within BACOVA_01054 at 262.663 kb on - strand, within BACOVA_01054 at 262.679 kb on - strand, within BACOVA_01054 at 262.703 kb on + strand, within BACOVA_01054 at 262.705 kb on + strand, within BACOVA_01054 at 262.706 kb on - strand, within BACOVA_01054 at 262.743 kb on - strand, within BACOVA_01054 at 262.779 kb on + strand at 262.779 kb on + strand at 262.779 kb on + strand at 262.780 kb on - strand at 262.806 kb on + strand at 262.818 kb on - strand at 262.819 kb on + strand at 262.820 kb on - strand at 262.820 kb on - strand at 262.822 kb on + strand at 262.823 kb on - strand at 262.823 kb on - strand at 262.838 kb on - strand at 262.848 kb on + strand at 262.866 kb on + strand at 262.867 kb on - strand at 262.869 kb on + strand at 262.870 kb on - strand at 262.870 kb on - strand at 262.886 kb on + strand at 262.914 kb on - strand at 262.938 kb on - strand at 262.993 kb on + strand at 262.993 kb on + strand at 263.015 kb on + strand at 263.097 kb on + strand, within BACOVA_01055 at 263.098 kb on - strand, within BACOVA_01055 at 263.098 kb on - strand, within BACOVA_01055 at 263.100 kb on + strand, within BACOVA_01055 at 263.101 kb on - strand, within BACOVA_01055 at 263.121 kb on + strand, within BACOVA_01055 at 263.121 kb on + strand, within BACOVA_01055 at 263.122 kb on - strand, within BACOVA_01055 at 263.122 kb on - strand, within BACOVA_01055 at 263.192 kb on + strand, within BACOVA_01055 at 263.193 kb on - strand, within BACOVA_01055 at 263.193 kb on - strand, within BACOVA_01055 at 263.197 kb on - strand, within BACOVA_01055 at 263.204 kb on + strand, within BACOVA_01055 at 263.208 kb on + strand, within BACOVA_01055 at 263.209 kb on + strand, within BACOVA_01055 at 263.232 kb on - strand, within BACOVA_01055 at 263.246 kb on - strand, within BACOVA_01055 at 263.256 kb on + strand, within BACOVA_01055 at 263.295 kb on - strand, within BACOVA_01055 at 263.322 kb on - strand, within BACOVA_01055 at 263.330 kb on - strand, within BACOVA_01055 at 263.336 kb on + strand, within BACOVA_01055 at 263.336 kb on + strand, within BACOVA_01055 at 263.337 kb on - strand, within BACOVA_01055 at 263.337 kb on - strand, within BACOVA_01055 at 263.337 kb on - strand, within BACOVA_01055 at 263.343 kb on + strand, within BACOVA_01055 at 263.370 kb on + strand, within BACOVA_01055 at 263.371 kb on - strand, within BACOVA_01055 at 263.371 kb on - strand, within BACOVA_01055 at 263.380 kb on + strand, within BACOVA_01055 at 263.380 kb on + strand, within BACOVA_01055 at 263.381 kb on - strand, within BACOVA_01055 at 263.381 kb on - strand, within BACOVA_01055 at 263.393 kb on + strand, within BACOVA_01055 at 263.394 kb on - strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.494 kb on + strand, within BACOVA_01055 at 263.495 kb on - strand, within BACOVA_01055 at 263.625 kb on - strand, within BACOVA_01055 at 263.639 kb on - strand, within BACOVA_01055 at 263.641 kb on - strand, within BACOVA_01055 at 263.641 kb on - strand, within BACOVA_01055 at 263.645 kb on - strand, within BACOVA_01055 at 263.666 kb on + strand, within BACOVA_01055 at 263.668 kb on + strand, within BACOVA_01055 at 263.668 kb on + strand, within BACOVA_01055 at 263.748 kb on + strand, within BACOVA_01055 at 263.748 kb on + strand, within BACOVA_01055 at 263.749 kb on - strand, within BACOVA_01055 at 263.749 kb on - strand, within BACOVA_01055 at 263.758 kb on + strand, within BACOVA_01055 at 263.759 kb on - strand, within BACOVA_01055 at 263.807 kb on + strand, within BACOVA_01055 at 263.817 kb on + strand, within BACOVA_01055 at 263.817 kb on + strand, within BACOVA_01055 at 263.817 kb on + strand, within BACOVA_01055 at 263.818 kb on - strand, within BACOVA_01055 at 263.828 kb on - strand, within BACOVA_01055 at 263.886 kb on + strand, within BACOVA_01055 at 263.887 kb on - strand, within BACOVA_01055 at 263.892 kb on + strand, within BACOVA_01055 at 263.897 kb on + strand, within BACOVA_01055 at 263.898 kb on - strand, within BACOVA_01055 at 263.898 kb on - strand, within BACOVA_01055 at 263.898 kb on - strand, within BACOVA_01055 at 263.915 kb on + strand, within BACOVA_01055 at 263.915 kb on + strand, within BACOVA_01055 at 263.930 kb on + strand, within BACOVA_01055 at 263.931 kb on - strand, within BACOVA_01055 at 263.931 kb on - strand, within BACOVA_01055 at 263.931 kb on - strand, within BACOVA_01055 at 263.931 kb on - strand, within BACOVA_01055 at 263.941 kb on + strand, within BACOVA_01055 at 263.941 kb on + strand, within BACOVA_01055 at 263.942 kb on - strand, within BACOVA_01055 at 263.943 kb on + strand, within BACOVA_01055 at 263.943 kb on + strand, within BACOVA_01055 at 263.943 kb on + strand, within BACOVA_01055 at 263.944 kb on - strand, within BACOVA_01055 at 264.009 kb on + strand, within BACOVA_01055 at 264.018 kb on + strand, within BACOVA_01055 at 264.026 kb on + strand, within BACOVA_01055 at 264.026 kb on + strand, within BACOVA_01055 at 264.027 kb on - strand, within BACOVA_01055 at 264.027 kb on - strand, within BACOVA_01055 at 264.094 kb on - strand, within BACOVA_01055 at 264.223 kb on + strand, within BACOVA_01055 at 264.224 kb on - strand, within BACOVA_01055 at 264.312 kb on - strand, within BACOVA_01055 at 264.312 kb on - strand, within BACOVA_01055 at 264.312 kb on - strand, within BACOVA_01055 at 264.315 kb on - strand, within BACOVA_01055 at 264.315 kb on - strand, within BACOVA_01055 at 264.340 kb on + strand, within BACOVA_01055 at 264.367 kb on + strand at 264.399 kb on - strand at 264.407 kb on - strand at 264.407 kb on - strand at 264.420 kb on + strand at 264.421 kb on - strand at 264.433 kb on - strand at 264.433 kb on - strand at 264.455 kb on + strand at 264.456 kb on - strand at 264.456 kb on - strand at 264.483 kb on + strand at 264.483 kb on - strand at 264.483 kb on - strand at 264.507 kb on + strand at 264.507 kb on + strand at 264.507 kb on + strand at 264.508 kb on - strand at 264.511 kb on + strand at 264.512 kb on - strand at 264.512 kb on - strand at 264.512 kb on - strand at 264.515 kb on + strand at 264.567 kb on - strand at 264.574 kb on + strand at 264.574 kb on + strand at 264.577 kb on - strand at 264.578 kb on + strand at 264.578 kb on + strand at 264.587 kb on - strand, within BACOVA_01056 at 264.612 kb on - strand, within BACOVA_01056 at 264.686 kb on + strand, within BACOVA_01056 at 264.695 kb on + strand, within BACOVA_01056 at 264.696 kb on - strand, within BACOVA_01056 at 264.746 kb on + strand at 264.746 kb on + strand at 264.746 kb on + strand at 264.746 kb on + strand at 264.767 kb on + strand at 264.768 kb on - strand at 264.772 kb on + strand at 264.772 kb on + strand at 264.775 kb on - strand at 264.777 kb on - strand at 264.781 kb on - strand at 264.800 kb on - strand at 264.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 261,888 + BACOVA_01054 0.19 +0.6 261,888 + BACOVA_01054 0.19 -0.5 261,889 - BACOVA_01054 0.19 +0.6 261,899 + BACOVA_01054 0.20 -1.1 261,899 + BACOVA_01054 0.20 -1.1 261,900 - BACOVA_01054 0.20 +0.3 261,900 - BACOVA_01054 0.20 -0.4 261,900 - BACOVA_01054 0.20 +0.1 261,923 - BACOVA_01054 0.22 -0.3 261,923 - BACOVA_01054 0.22 -0.2 261,945 - BACOVA_01054 0.23 -0.1 261,957 + BACOVA_01054 0.24 +0.3 261,957 + BACOVA_01054 0.24 +0.3 261,957 + BACOVA_01054 0.24 +0.3 261,958 - BACOVA_01054 0.24 +0.5 261,991 - BACOVA_01054 0.27 +0.4 261,991 - BACOVA_01054 0.27 -0.3 262,034 - BACOVA_01054 0.31 +0.2 262,035 + BACOVA_01054 0.31 +1.1 262,035 + BACOVA_01054 0.31 +0.3 262,035 + BACOVA_01054 0.31 +1.4 262,035 + BACOVA_01054 0.31 +0.6 262,036 - BACOVA_01054 0.31 -0.3 262,085 - BACOVA_01054 0.35 -0.0 262,099 + BACOVA_01054 0.36 -1.4 262,105 - BACOVA_01054 0.37 -0.6 262,129 + BACOVA_01054 0.39 +1.1 262,134 - BACOVA_01054 0.39 +0.5 262,136 + BACOVA_01054 0.39 -0.2 262,136 + BACOVA_01054 0.39 +0.2 262,191 - BACOVA_01054 0.44 +0.5 262,225 + BACOVA_01054 0.46 -0.2 262,225 + BACOVA_01054 0.46 +1.3 262,225 + BACOVA_01054 0.46 +0.7 262,225 + BACOVA_01054 0.46 +1.1 262,226 - BACOVA_01054 0.47 -0.6 262,234 + BACOVA_01054 0.47 +0.2 262,235 - BACOVA_01054 0.47 -0.2 262,239 - BACOVA_01054 0.48 -1.1 262,276 + BACOVA_01054 0.51 +0.2 262,352 + BACOVA_01054 0.57 -0.5 262,388 + BACOVA_01054 0.60 +0.6 262,395 + BACOVA_01054 0.60 -0.1 262,398 + BACOVA_01054 0.61 -0.6 262,415 + BACOVA_01054 0.62 +0.7 262,450 + BACOVA_01054 0.65 -1.5 262,451 - BACOVA_01054 0.65 +0.2 262,452 + BACOVA_01054 0.65 -0.7 262,534 - BACOVA_01054 0.72 +0.4 262,537 - BACOVA_01054 0.72 -1.1 262,537 - BACOVA_01054 0.72 -0.9 262,642 - BACOVA_01054 0.81 +0.2 262,657 + BACOVA_01054 0.82 +0.6 262,658 - BACOVA_01054 0.82 -0.2 262,663 - BACOVA_01054 0.83 +0.0 262,663 - BACOVA_01054 0.83 -0.4 262,679 - BACOVA_01054 0.84 -1.2 262,703 + BACOVA_01054 0.86 -0.4 262,705 + BACOVA_01054 0.86 -2.8 262,706 - BACOVA_01054 0.86 +0.7 262,743 - BACOVA_01054 0.89 +0.5 262,779 + +0.1 262,779 + -1.2 262,779 + +0.1 262,780 - -0.3 262,806 + +0.4 262,818 - +0.1 262,819 + -1.0 262,820 - +0.2 262,820 - -0.1 262,822 + -0.7 262,823 - -0.1 262,823 - -0.3 262,838 - +0.1 262,848 + +0.3 262,866 + -0.3 262,867 - -0.3 262,869 + -0.2 262,870 - -0.1 262,870 - -0.4 262,886 + +0.2 262,914 - -1.2 262,938 - -0.2 262,993 + +0.6 262,993 + -0.4 263,015 + +0.3 263,097 + BACOVA_01055 0.14 -1.2 263,098 - BACOVA_01055 0.14 -0.0 263,098 - BACOVA_01055 0.14 +0.5 263,100 + BACOVA_01055 0.14 +0.7 263,101 - BACOVA_01055 0.14 -0.2 263,121 + BACOVA_01055 0.15 +0.2 263,121 + BACOVA_01055 0.15 +0.3 263,122 - BACOVA_01055 0.15 -0.4 263,122 - BACOVA_01055 0.15 -0.1 263,192 + BACOVA_01055 0.20 +0.3 263,193 - BACOVA_01055 0.20 -0.1 263,193 - BACOVA_01055 0.20 +0.8 263,197 - BACOVA_01055 0.20 -1.2 263,204 + BACOVA_01055 0.20 +0.6 263,208 + BACOVA_01055 0.21 +0.6 263,209 + BACOVA_01055 0.21 -0.4 263,232 - BACOVA_01055 0.22 -0.2 263,246 - BACOVA_01055 0.23 +0.4 263,256 + BACOVA_01055 0.24 +0.1 263,295 - BACOVA_01055 0.26 -0.2 263,322 - BACOVA_01055 0.28 +0.6 263,330 - BACOVA_01055 0.28 +0.5 263,336 + BACOVA_01055 0.29 +0.2 263,336 + BACOVA_01055 0.29 -0.3 263,337 - BACOVA_01055 0.29 -0.5 263,337 - BACOVA_01055 0.29 +0.0 263,337 - BACOVA_01055 0.29 -0.8 263,343 + BACOVA_01055 0.29 +0.1 263,370 + BACOVA_01055 0.31 +1.2 263,371 - BACOVA_01055 0.31 +0.1 263,371 - BACOVA_01055 0.31 +0.0 263,380 + BACOVA_01055 0.31 +1.1 263,380 + BACOVA_01055 0.31 +0.6 263,381 - BACOVA_01055 0.31 -0.5 263,381 - BACOVA_01055 0.31 -1.1 263,393 + BACOVA_01055 0.32 -0.2 263,394 - BACOVA_01055 0.32 -0.4 263,414 + BACOVA_01055 0.33 +0.1 263,414 + BACOVA_01055 0.33 +0.5 263,414 + BACOVA_01055 0.33 -0.2 263,414 + BACOVA_01055 0.33 -0.3 263,494 + BACOVA_01055 0.38 -0.3 263,495 - BACOVA_01055 0.38 +0.6 263,625 - BACOVA_01055 0.46 -0.4 263,639 - BACOVA_01055 0.47 -0.1 263,641 - BACOVA_01055 0.47 +0.4 263,641 - BACOVA_01055 0.47 -0.4 263,645 - BACOVA_01055 0.47 -0.1 263,666 + BACOVA_01055 0.49 +0.6 263,668 + BACOVA_01055 0.49 +0.1 263,668 + BACOVA_01055 0.49 +2.1 263,748 + BACOVA_01055 0.54 +0.6 263,748 + BACOVA_01055 0.54 +0.2 263,749 - BACOVA_01055 0.54 +0.2 263,749 - BACOVA_01055 0.54 -0.0 263,758 + BACOVA_01055 0.54 -0.7 263,759 - BACOVA_01055 0.54 +1.1 263,807 + BACOVA_01055 0.57 +1.3 263,817 + BACOVA_01055 0.58 +0.7 263,817 + BACOVA_01055 0.58 -0.8 263,817 + BACOVA_01055 0.58 +0.6 263,818 - BACOVA_01055 0.58 -0.0 263,828 - BACOVA_01055 0.59 -1.1 263,886 + BACOVA_01055 0.62 -0.7 263,887 - BACOVA_01055 0.62 -0.1 263,892 + BACOVA_01055 0.63 +0.1 263,897 + BACOVA_01055 0.63 -0.4 263,898 - BACOVA_01055 0.63 -0.1 263,898 - BACOVA_01055 0.63 -0.4 263,898 - BACOVA_01055 0.63 +0.2 263,915 + BACOVA_01055 0.64 +1.3 263,915 + BACOVA_01055 0.64 +1.2 263,930 + BACOVA_01055 0.65 -0.2 263,931 - BACOVA_01055 0.65 +1.1 263,931 - BACOVA_01055 0.65 -0.5 263,931 - BACOVA_01055 0.65 -0.6 263,931 - BACOVA_01055 0.65 -0.2 263,941 + BACOVA_01055 0.66 -0.5 263,941 + BACOVA_01055 0.66 +0.3 263,942 - BACOVA_01055 0.66 -0.2 263,943 + BACOVA_01055 0.66 +1.3 263,943 + BACOVA_01055 0.66 -0.1 263,943 + BACOVA_01055 0.66 -0.3 263,944 - BACOVA_01055 0.66 +0.1 264,009 + BACOVA_01055 0.70 +1.0 264,018 + BACOVA_01055 0.70 +1.1 264,026 + BACOVA_01055 0.71 -0.7 264,026 + BACOVA_01055 0.71 +1.4 264,027 - BACOVA_01055 0.71 -0.0 264,027 - BACOVA_01055 0.71 -1.4 264,094 - BACOVA_01055 0.75 +0.3 264,223 + BACOVA_01055 0.83 +0.7 264,224 - BACOVA_01055 0.83 -1.8 264,312 - BACOVA_01055 0.88 +0.6 264,312 - BACOVA_01055 0.88 -0.2 264,312 - BACOVA_01055 0.88 -2.4 264,315 - BACOVA_01055 0.88 +0.2 264,315 - BACOVA_01055 0.88 +0.4 264,340 + BACOVA_01055 0.90 +0.6 264,367 + -0.4 264,399 - +0.2 264,407 - +0.1 264,407 - -0.5 264,420 + +0.1 264,421 - +0.8 264,433 - +0.4 264,433 - +0.7 264,455 + +0.1 264,456 - -0.1 264,456 - -0.6 264,483 + +0.0 264,483 - +0.2 264,483 - -0.2 264,507 + -0.6 264,507 + -1.1 264,507 + -1.1 264,508 - -0.4 264,511 + +1.4 264,512 - +0.9 264,512 - -0.3 264,512 - -0.1 264,515 + -1.0 264,567 - -0.4 264,574 + -1.1 264,574 + +0.4 264,577 - -0.9 264,578 + -0.2 264,578 + -1.1 264,587 - BACOVA_01056 0.14 -0.5 264,612 - BACOVA_01056 0.26 +0.1 264,686 + BACOVA_01056 0.62 -0.9 264,695 + BACOVA_01056 0.66 +0.2 264,696 - BACOVA_01056 0.67 +0.4 264,746 + -1.1 264,746 + -2.1 264,746 + +1.7 264,746 + -0.7 264,767 + -1.7 264,768 - +1.4 264,772 + +1.4 264,772 + -1.9 264,775 - -0.5 264,777 - -0.5 264,781 - +0.8 264,800 - +1.2 264,800 - -0.7
Or see this region's nucleotide sequence