Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_02122 and MPMX26_02123 are separated by 33 nucleotides MPMX26_02123 and MPMX26_02124 are separated by 54 nucleotides MPMX26_02124 and MPMX26_02125 are separated by 0 nucleotides
MPMX26_02122: MPMX26_02122 - hypothetical protein, at 2,177,173 to 2,178,384
_02122
MPMX26_02123: MPMX26_02123 - hypothetical protein, at 2,178,418 to 2,178,948
_02123
MPMX26_02124: MPMX26_02124 - hypothetical protein, at 2,179,003 to 2,179,809
_02124
MPMX26_02125: MPMX26_02125 - hypothetical protein, at 2,179,810 to 2,181,069
_02125
Position (kb)
2178
2179 Strain fitness (log2 ratio)
-2
-1
0
1 at 2177.550 kb on + strand, within MPMX26_02122 at 2177.574 kb on + strand, within MPMX26_02122 at 2177.574 kb on + strand, within MPMX26_02122 at 2177.574 kb on + strand, within MPMX26_02122 at 2177.643 kb on + strand, within MPMX26_02122 at 2177.659 kb on - strand, within MPMX26_02122 at 2177.701 kb on + strand, within MPMX26_02122 at 2177.871 kb on + strand, within MPMX26_02122 at 2177.896 kb on + strand, within MPMX26_02122 at 2177.931 kb on + strand, within MPMX26_02122 at 2177.931 kb on + strand, within MPMX26_02122 at 2177.931 kb on + strand, within MPMX26_02122 at 2177.956 kb on + strand, within MPMX26_02122 at 2177.956 kb on + strand, within MPMX26_02122 at 2177.980 kb on + strand, within MPMX26_02122 at 2177.980 kb on + strand, within MPMX26_02122 at 2177.980 kb on + strand, within MPMX26_02122 at 2177.985 kb on + strand, within MPMX26_02122 at 2178.034 kb on + strand, within MPMX26_02122 at 2178.034 kb on + strand, within MPMX26_02122 at 2178.049 kb on + strand, within MPMX26_02122 at 2178.049 kb on + strand, within MPMX26_02122 at 2178.084 kb on + strand, within MPMX26_02122 at 2178.101 kb on + strand, within MPMX26_02122 at 2178.144 kb on + strand, within MPMX26_02122 at 2178.144 kb on + strand, within MPMX26_02122 at 2178.144 kb on + strand, within MPMX26_02122 at 2178.144 kb on + strand, within MPMX26_02122 at 2178.173 kb on + strand, within MPMX26_02122 at 2178.178 kb on + strand, within MPMX26_02122 at 2178.178 kb on + strand, within MPMX26_02122 at 2178.198 kb on + strand, within MPMX26_02122 at 2178.198 kb on + strand, within MPMX26_02122 at 2178.198 kb on + strand, within MPMX26_02122 at 2178.198 kb on + strand, within MPMX26_02122 at 2178.198 kb on + strand, within MPMX26_02122 at 2178.198 kb on + strand, within MPMX26_02122 at 2178.217 kb on + strand, within MPMX26_02122 at 2178.256 kb on + strand, within MPMX26_02122 at 2178.279 kb on + strand at 2178.354 kb on + strand at 2178.442 kb on - strand at 2178.471 kb on - strand, within MPMX26_02123 at 2178.471 kb on - strand, within MPMX26_02123 at 2178.471 kb on - strand, within MPMX26_02123 at 2178.471 kb on - strand, within MPMX26_02123 at 2178.471 kb on - strand, within MPMX26_02123 at 2178.471 kb on - strand, within MPMX26_02123 at 2178.471 kb on - strand, within MPMX26_02123 at 2178.471 kb on - strand, within MPMX26_02123 at 2178.471 kb on - strand, within MPMX26_02123 at 2178.471 kb on - strand, within MPMX26_02123 at 2178.471 kb on - strand, within MPMX26_02123 at 2178.693 kb on - strand, within MPMX26_02123 at 2178.739 kb on - strand, within MPMX26_02123 at 2178.739 kb on - strand, within MPMX26_02123 at 2178.739 kb on - strand, within MPMX26_02123 at 2178.739 kb on - strand, within MPMX26_02123 at 2178.758 kb on - strand, within MPMX26_02123 at 2178.836 kb on - strand, within MPMX26_02123 at 2178.836 kb on - strand, within MPMX26_02123 at 2178.844 kb on - strand, within MPMX26_02123 at 2178.969 kb on - strand at 2179.695 kb on - strand, within MPMX26_02124
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 2,177,550 + MPMX26_02122 0.31 -0.5 2,177,574 + MPMX26_02122 0.33 +0.4 2,177,574 + MPMX26_02122 0.33 +0.4 2,177,574 + MPMX26_02122 0.33 +1.4 2,177,643 + MPMX26_02122 0.39 +0.3 2,177,659 - MPMX26_02122 0.40 +1.1 2,177,701 + MPMX26_02122 0.44 -0.3 2,177,871 + MPMX26_02122 0.58 -0.0 2,177,896 + MPMX26_02122 0.60 -0.2 2,177,931 + MPMX26_02122 0.63 +0.2 2,177,931 + MPMX26_02122 0.63 -0.1 2,177,931 + MPMX26_02122 0.63 +0.7 2,177,956 + MPMX26_02122 0.65 +0.4 2,177,956 + MPMX26_02122 0.65 -0.6 2,177,980 + MPMX26_02122 0.67 -0.1 2,177,980 + MPMX26_02122 0.67 -0.4 2,177,980 + MPMX26_02122 0.67 -0.2 2,177,985 + MPMX26_02122 0.67 +0.1 2,178,034 + MPMX26_02122 0.71 +0.3 2,178,034 + MPMX26_02122 0.71 +0.8 2,178,049 + MPMX26_02122 0.72 +0.2 2,178,049 + MPMX26_02122 0.72 +0.3 2,178,084 + MPMX26_02122 0.75 +0.2 2,178,101 + MPMX26_02122 0.77 -0.3 2,178,144 + MPMX26_02122 0.80 +0.4 2,178,144 + MPMX26_02122 0.80 -0.5 2,178,144 + MPMX26_02122 0.80 -0.3 2,178,144 + MPMX26_02122 0.80 +0.1 2,178,173 + MPMX26_02122 0.83 +0.7 2,178,178 + MPMX26_02122 0.83 +0.3 2,178,178 + MPMX26_02122 0.83 +0.0 2,178,198 + MPMX26_02122 0.85 -0.1 2,178,198 + MPMX26_02122 0.85 +0.0 2,178,198 + MPMX26_02122 0.85 -0.5 2,178,198 + MPMX26_02122 0.85 -0.9 2,178,198 + MPMX26_02122 0.85 +0.0 2,178,198 + MPMX26_02122 0.85 -0.4 2,178,217 + MPMX26_02122 0.86 +0.2 2,178,256 + MPMX26_02122 0.89 +0.6 2,178,279 + -0.1 2,178,354 + -0.5 2,178,442 - -0.4 2,178,471 - MPMX26_02123 0.10 +0.1 2,178,471 - MPMX26_02123 0.10 -0.2 2,178,471 - MPMX26_02123 0.10 -0.0 2,178,471 - MPMX26_02123 0.10 -0.5 2,178,471 - MPMX26_02123 0.10 -0.5 2,178,471 - MPMX26_02123 0.10 -0.3 2,178,471 - MPMX26_02123 0.10 +0.2 2,178,471 - MPMX26_02123 0.10 -1.9 2,178,471 - MPMX26_02123 0.10 -0.7 2,178,471 - MPMX26_02123 0.10 -0.5 2,178,471 - MPMX26_02123 0.10 +0.1 2,178,693 - MPMX26_02123 0.52 -0.8 2,178,739 - MPMX26_02123 0.60 -1.2 2,178,739 - MPMX26_02123 0.60 -0.3 2,178,739 - MPMX26_02123 0.60 +0.5 2,178,739 - MPMX26_02123 0.60 +0.0 2,178,758 - MPMX26_02123 0.64 +0.3 2,178,836 - MPMX26_02123 0.79 +0.2 2,178,836 - MPMX26_02123 0.79 +0.4 2,178,844 - MPMX26_02123 0.80 +0.2 2,178,969 - -0.4 2,179,695 - MPMX26_02124 0.86 -1.0
Or see this region's nucleotide sequence