Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_02040 and MPMX26_02041 are separated by 1 nucleotides MPMX26_02041 and MPMX26_02042 are separated by 210 nucleotides MPMX26_02042 and MPMX26_02043 are separated by 164 nucleotides
MPMX26_02040: MPMX26_02040 - 23S rRNA 5-hydroxycytidine synthase, at 2,106,487 to 2,107,881
_02040
MPMX26_02041: MPMX26_02041 - Ferredoxin YfhL, at 2,107,883 to 2,108,146
_02041
MPMX26_02042: MPMX26_02042 - Alkyl hydroperoxide reductase subunit F, at 2,108,357 to 2,109,922
_02042
MPMX26_02043: MPMX26_02043 - hypothetical protein, at 2,110,087 to 2,111,007
_02043
Position (kb)
2108
2109
2110 Strain fitness (log2 ratio)
-1
0
1 at 2108.393 kb on - strand at 2108.401 kb on - strand at 2108.699 kb on - strand, within MPMX26_02042 at 2108.699 kb on - strand, within MPMX26_02042 at 2108.699 kb on - strand, within MPMX26_02042 at 2108.701 kb on - strand, within MPMX26_02042 at 2108.701 kb on - strand, within MPMX26_02042 at 2108.872 kb on - strand, within MPMX26_02042 at 2108.882 kb on - strand, within MPMX26_02042 at 2108.902 kb on - strand, within MPMX26_02042 at 2108.963 kb on - strand, within MPMX26_02042 at 2108.963 kb on - strand, within MPMX26_02042 at 2108.963 kb on - strand, within MPMX26_02042 at 2109.007 kb on - strand, within MPMX26_02042 at 2109.017 kb on - strand, within MPMX26_02042 at 2109.050 kb on - strand, within MPMX26_02042 at 2109.050 kb on - strand, within MPMX26_02042 at 2109.050 kb on - strand, within MPMX26_02042 at 2109.050 kb on - strand, within MPMX26_02042 at 2109.259 kb on - strand, within MPMX26_02042 at 2109.259 kb on - strand, within MPMX26_02042 at 2109.259 kb on - strand, within MPMX26_02042 at 2109.736 kb on - strand, within MPMX26_02042 at 2109.752 kb on - strand, within MPMX26_02042 at 2110.306 kb on - strand, within MPMX26_02043 at 2110.500 kb on - strand, within MPMX26_02043 at 2110.500 kb on - strand, within MPMX26_02043 at 2110.500 kb on - strand, within MPMX26_02043
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 2,108,393 - -0.4 2,108,401 - -0.5 2,108,699 - MPMX26_02042 0.22 -0.9 2,108,699 - MPMX26_02042 0.22 -0.2 2,108,699 - MPMX26_02042 0.22 -0.5 2,108,701 - MPMX26_02042 0.22 +0.5 2,108,701 - MPMX26_02042 0.22 -0.7 2,108,872 - MPMX26_02042 0.33 -0.4 2,108,882 - MPMX26_02042 0.34 -0.7 2,108,902 - MPMX26_02042 0.35 +0.4 2,108,963 - MPMX26_02042 0.39 +0.0 2,108,963 - MPMX26_02042 0.39 +0.5 2,108,963 - MPMX26_02042 0.39 -0.4 2,109,007 - MPMX26_02042 0.42 +0.1 2,109,017 - MPMX26_02042 0.42 -0.2 2,109,050 - MPMX26_02042 0.44 -0.6 2,109,050 - MPMX26_02042 0.44 +0.1 2,109,050 - MPMX26_02042 0.44 -1.1 2,109,050 - MPMX26_02042 0.44 +0.7 2,109,259 - MPMX26_02042 0.58 -0.1 2,109,259 - MPMX26_02042 0.58 -0.1 2,109,259 - MPMX26_02042 0.58 -0.3 2,109,736 - MPMX26_02042 0.88 +0.0 2,109,752 - MPMX26_02042 0.89 +0.0 2,110,306 - MPMX26_02043 0.24 +0.5 2,110,500 - MPMX26_02043 0.45 +0.5 2,110,500 - MPMX26_02043 0.45 +0.4 2,110,500 - MPMX26_02043 0.45 +0.5
Or see this region's nucleotide sequence