Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02042

Experiment: casaminos (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02040 and MPMX26_02041 are separated by 1 nucleotidesMPMX26_02041 and MPMX26_02042 are separated by 210 nucleotidesMPMX26_02042 and MPMX26_02043 are separated by 164 nucleotides MPMX26_02040: MPMX26_02040 - 23S rRNA 5-hydroxycytidine synthase, at 2,106,487 to 2,107,881 _02040 MPMX26_02041: MPMX26_02041 - Ferredoxin YfhL, at 2,107,883 to 2,108,146 _02041 MPMX26_02042: MPMX26_02042 - Alkyl hydroperoxide reductase subunit F, at 2,108,357 to 2,109,922 _02042 MPMX26_02043: MPMX26_02043 - hypothetical protein, at 2,110,087 to 2,111,007 _02043 Position (kb) 2108 2109 2110Strain fitness (log2 ratio) -1 0 1at 2108.393 kb on - strandat 2108.401 kb on - strandat 2108.699 kb on - strand, within MPMX26_02042at 2108.699 kb on - strand, within MPMX26_02042at 2108.699 kb on - strand, within MPMX26_02042at 2108.701 kb on - strand, within MPMX26_02042at 2108.701 kb on - strand, within MPMX26_02042at 2108.872 kb on - strand, within MPMX26_02042at 2108.882 kb on - strand, within MPMX26_02042at 2108.902 kb on - strand, within MPMX26_02042at 2108.963 kb on - strand, within MPMX26_02042at 2108.963 kb on - strand, within MPMX26_02042at 2108.963 kb on - strand, within MPMX26_02042at 2109.007 kb on - strand, within MPMX26_02042at 2109.017 kb on - strand, within MPMX26_02042at 2109.050 kb on - strand, within MPMX26_02042at 2109.050 kb on - strand, within MPMX26_02042at 2109.050 kb on - strand, within MPMX26_02042at 2109.050 kb on - strand, within MPMX26_02042at 2109.259 kb on - strand, within MPMX26_02042at 2109.259 kb on - strand, within MPMX26_02042at 2109.259 kb on - strand, within MPMX26_02042at 2109.736 kb on - strand, within MPMX26_02042at 2109.752 kb on - strand, within MPMX26_02042at 2110.306 kb on - strand, within MPMX26_02043at 2110.500 kb on - strand, within MPMX26_02043at 2110.500 kb on - strand, within MPMX26_02043at 2110.500 kb on - strand, within MPMX26_02043

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
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2,108,393 - -0.4
2,108,401 - -0.5
2,108,699 - MPMX26_02042 0.22 -0.9
2,108,699 - MPMX26_02042 0.22 -0.2
2,108,699 - MPMX26_02042 0.22 -0.5
2,108,701 - MPMX26_02042 0.22 +0.5
2,108,701 - MPMX26_02042 0.22 -0.7
2,108,872 - MPMX26_02042 0.33 -0.4
2,108,882 - MPMX26_02042 0.34 -0.7
2,108,902 - MPMX26_02042 0.35 +0.4
2,108,963 - MPMX26_02042 0.39 +0.0
2,108,963 - MPMX26_02042 0.39 +0.5
2,108,963 - MPMX26_02042 0.39 -0.4
2,109,007 - MPMX26_02042 0.42 +0.1
2,109,017 - MPMX26_02042 0.42 -0.2
2,109,050 - MPMX26_02042 0.44 -0.6
2,109,050 - MPMX26_02042 0.44 +0.1
2,109,050 - MPMX26_02042 0.44 -1.1
2,109,050 - MPMX26_02042 0.44 +0.7
2,109,259 - MPMX26_02042 0.58 -0.1
2,109,259 - MPMX26_02042 0.58 -0.1
2,109,259 - MPMX26_02042 0.58 -0.3
2,109,736 - MPMX26_02042 0.88 +0.0
2,109,752 - MPMX26_02042 0.89 +0.0
2,110,306 - MPMX26_02043 0.24 +0.5
2,110,500 - MPMX26_02043 0.45 +0.5
2,110,500 - MPMX26_02043 0.45 +0.4
2,110,500 - MPMX26_02043 0.45 +0.5

Or see this region's nucleotide sequence