Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00178 and MPMX26_00179 are separated by 9 nucleotides MPMX26_00179 and MPMX26_00180 are separated by 76 nucleotides MPMX26_00180 and MPMX26_00181 are separated by 282 nucleotides
MPMX26_00178: MPMX26_00178 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 191,741 to 192,550
_00178
MPMX26_00179: MPMX26_00179 - ADP-ribose pyrophosphatase, at 192,560 to 193,180
_00179
MPMX26_00180: MPMX26_00180 - Phosphomethylpyrimidine synthase, at 193,257 to 195,149
_00180
MPMX26_00181: MPMX26_00181 - hypothetical protein, at 195,432 to 196,496
_00181
Position (kb) 193
194
195
196 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 192.311 kb on - strand, within MPMX26_00178 at 192.311 kb on - strand, within MPMX26_00178 at 192.332 kb on - strand, within MPMX26_00178 at 192.339 kb on + strand, within MPMX26_00178 at 192.342 kb on - strand, within MPMX26_00178 at 192.344 kb on + strand, within MPMX26_00178 at 192.361 kb on - strand, within MPMX26_00178 at 192.397 kb on - strand, within MPMX26_00178 at 192.424 kb on - strand, within MPMX26_00178 at 192.435 kb on - strand, within MPMX26_00178 at 192.442 kb on - strand, within MPMX26_00178 at 192.452 kb on - strand, within MPMX26_00178 at 192.452 kb on - strand, within MPMX26_00178 at 192.457 kb on - strand, within MPMX26_00178 at 192.542 kb on - strand at 192.586 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.742 kb on - strand, within MPMX26_00179 at 192.758 kb on - strand, within MPMX26_00179 at 192.758 kb on - strand, within MPMX26_00179 at 192.758 kb on - strand, within MPMX26_00179 at 192.758 kb on - strand, within MPMX26_00179 at 192.758 kb on - strand, within MPMX26_00179 at 192.771 kb on + strand, within MPMX26_00179 at 192.771 kb on + strand, within MPMX26_00179 at 192.774 kb on - strand, within MPMX26_00179 at 192.774 kb on - strand, within MPMX26_00179 at 192.774 kb on - strand, within MPMX26_00179 at 192.779 kb on - strand, within MPMX26_00179 at 192.779 kb on - strand, within MPMX26_00179 at 192.779 kb on - strand, within MPMX26_00179 at 192.779 kb on - strand, within MPMX26_00179 at 192.784 kb on - strand, within MPMX26_00179 at 192.784 kb on - strand, within MPMX26_00179 at 192.862 kb on - strand, within MPMX26_00179 at 192.863 kb on - strand, within MPMX26_00179 at 192.871 kb on - strand, within MPMX26_00179 at 192.873 kb on - strand, within MPMX26_00179 at 192.873 kb on - strand, within MPMX26_00179 at 192.873 kb on - strand, within MPMX26_00179 at 192.880 kb on - strand, within MPMX26_00179 at 192.902 kb on - strand, within MPMX26_00179 at 192.937 kb on - strand, within MPMX26_00179 at 192.953 kb on - strand, within MPMX26_00179 at 192.953 kb on - strand, within MPMX26_00179 at 192.953 kb on - strand, within MPMX26_00179 at 192.953 kb on - strand, within MPMX26_00179 at 192.953 kb on - strand, within MPMX26_00179 at 192.953 kb on - strand, within MPMX26_00179 at 192.953 kb on - strand, within MPMX26_00179 at 193.010 kb on - strand, within MPMX26_00179 at 193.042 kb on - strand, within MPMX26_00179 at 193.042 kb on - strand, within MPMX26_00179 at 193.045 kb on - strand, within MPMX26_00179 at 193.055 kb on - strand, within MPMX26_00179 at 193.107 kb on - strand, within MPMX26_00179 at 193.107 kb on - strand, within MPMX26_00179 at 193.107 kb on - strand, within MPMX26_00179 at 193.107 kb on - strand, within MPMX26_00179 at 193.163 kb on - strand at 193.173 kb on - strand at 193.173 kb on - strand at 193.183 kb on - strand at 193.224 kb on + strand at 193.275 kb on + strand at 193.275 kb on + strand at 193.283 kb on - strand at 193.293 kb on - strand at 193.308 kb on - strand at 193.360 kb on + strand at 193.360 kb on + strand at 193.373 kb on - strand at 193.377 kb on + strand at 193.385 kb on - strand at 193.413 kb on - strand at 193.461 kb on + strand, within MPMX26_00180 at 193.464 kb on - strand, within MPMX26_00180 at 193.492 kb on + strand, within MPMX26_00180 at 193.500 kb on - strand, within MPMX26_00180 at 193.500 kb on - strand, within MPMX26_00180 at 193.554 kb on - strand, within MPMX26_00180 at 193.554 kb on - strand, within MPMX26_00180 at 193.554 kb on - strand, within MPMX26_00180 at 193.554 kb on - strand, within MPMX26_00180 at 193.554 kb on - strand, within MPMX26_00180 at 193.554 kb on - strand, within MPMX26_00180 at 193.564 kb on - strand, within MPMX26_00180 at 193.577 kb on - strand, within MPMX26_00180 at 193.577 kb on - strand, within MPMX26_00180 at 193.596 kb on - strand, within MPMX26_00180 at 193.673 kb on - strand, within MPMX26_00180 at 193.673 kb on - strand, within MPMX26_00180 at 193.695 kb on - strand, within MPMX26_00180 at 193.700 kb on + strand, within MPMX26_00180 at 193.713 kb on - strand, within MPMX26_00180 at 193.736 kb on - strand, within MPMX26_00180 at 193.879 kb on + strand, within MPMX26_00180 at 193.887 kb on - strand, within MPMX26_00180 at 193.887 kb on - strand, within MPMX26_00180 at 193.887 kb on - strand, within MPMX26_00180 at 193.917 kb on - strand, within MPMX26_00180 at 193.917 kb on - strand, within MPMX26_00180 at 193.947 kb on - strand, within MPMX26_00180 at 194.096 kb on - strand, within MPMX26_00180 at 194.096 kb on - strand, within MPMX26_00180 at 194.096 kb on - strand, within MPMX26_00180 at 194.099 kb on - strand, within MPMX26_00180 at 194.117 kb on + strand, within MPMX26_00180 at 194.208 kb on - strand, within MPMX26_00180 at 194.296 kb on + strand, within MPMX26_00180 at 194.304 kb on - strand, within MPMX26_00180 at 194.304 kb on - strand, within MPMX26_00180 at 194.324 kb on - strand, within MPMX26_00180 at 194.324 kb on - strand, within MPMX26_00180 at 194.434 kb on - strand, within MPMX26_00180 at 194.444 kb on - strand, within MPMX26_00180 at 194.444 kb on - strand, within MPMX26_00180 at 194.546 kb on - strand, within MPMX26_00180 at 194.564 kb on - strand, within MPMX26_00180 at 194.615 kb on - strand, within MPMX26_00180 at 194.644 kb on - strand, within MPMX26_00180 at 194.646 kb on - strand, within MPMX26_00180 at 194.646 kb on - strand, within MPMX26_00180 at 194.646 kb on - strand, within MPMX26_00180 at 194.720 kb on - strand, within MPMX26_00180 at 194.754 kb on - strand, within MPMX26_00180 at 194.809 kb on + strand, within MPMX26_00180 at 194.817 kb on - strand, within MPMX26_00180 at 194.855 kb on - strand, within MPMX26_00180 at 194.948 kb on - strand, within MPMX26_00180 at 194.969 kb on - strand at 194.981 kb on - strand at 195.160 kb on - strand at 195.160 kb on - strand at 195.160 kb on - strand at 195.214 kb on - strand at 195.257 kb on - strand at 195.264 kb on - strand at 195.267 kb on + strand at 195.274 kb on - strand at 195.274 kb on - strand at 195.274 kb on - strand at 195.274 kb on - strand at 195.274 kb on - strand at 195.274 kb on - strand at 195.275 kb on - strand at 195.275 kb on - strand at 195.275 kb on - strand at 195.275 kb on - strand at 195.275 kb on - strand at 195.275 kb on - strand at 195.275 kb on - strand at 195.275 kb on - strand at 195.275 kb on - strand at 195.275 kb on - strand at 195.275 kb on - strand at 195.275 kb on - strand at 195.275 kb on - strand at 195.275 kb on - strand at 195.275 kb on - strand at 195.275 kb on - strand at 195.283 kb on + strand at 195.290 kb on - strand at 195.291 kb on - strand at 195.291 kb on - strand at 195.294 kb on - strand at 195.361 kb on - strand at 195.361 kb on - strand at 195.361 kb on - strand at 195.361 kb on - strand at 195.369 kb on - strand at 195.445 kb on - strand at 195.463 kb on - strand at 195.463 kb on - strand at 195.489 kb on - strand at 195.489 kb on - strand at 195.489 kb on - strand at 195.489 kb on - strand at 195.489 kb on - strand at 195.489 kb on - strand at 195.489 kb on - strand at 195.489 kb on - strand at 195.489 kb on - strand at 195.489 kb on - strand at 195.501 kb on - strand at 195.501 kb on - strand at 195.501 kb on - strand at 195.501 kb on - strand at 195.507 kb on - strand at 195.564 kb on - strand, within MPMX26_00181 at 195.616 kb on - strand, within MPMX26_00181 at 195.647 kb on - strand, within MPMX26_00181 at 195.648 kb on - strand, within MPMX26_00181 at 195.667 kb on - strand, within MPMX26_00181 at 195.667 kb on - strand, within MPMX26_00181 at 195.667 kb on - strand, within MPMX26_00181 at 195.667 kb on - strand, within MPMX26_00181 at 195.674 kb on - strand, within MPMX26_00181 at 195.682 kb on - strand, within MPMX26_00181 at 195.682 kb on - strand, within MPMX26_00181 at 195.697 kb on - strand, within MPMX26_00181 at 195.699 kb on - strand, within MPMX26_00181 at 195.735 kb on - strand, within MPMX26_00181 at 195.738 kb on - strand, within MPMX26_00181 at 195.738 kb on - strand, within MPMX26_00181 at 195.751 kb on - strand, within MPMX26_00181 at 195.759 kb on - strand, within MPMX26_00181 at 195.764 kb on - strand, within MPMX26_00181 at 195.771 kb on - strand, within MPMX26_00181 at 195.812 kb on - strand, within MPMX26_00181 at 195.820 kb on - strand, within MPMX26_00181 at 195.820 kb on - strand, within MPMX26_00181 at 195.858 kb on - strand, within MPMX26_00181 at 195.858 kb on - strand, within MPMX26_00181 at 195.877 kb on - strand, within MPMX26_00181 at 195.921 kb on - strand, within MPMX26_00181 at 195.921 kb on - strand, within MPMX26_00181 at 195.921 kb on - strand, within MPMX26_00181 at 195.932 kb on - strand, within MPMX26_00181 at 196.039 kb on - strand, within MPMX26_00181 at 196.044 kb on - strand, within MPMX26_00181 at 196.044 kb on - strand, within MPMX26_00181 at 196.057 kb on + strand, within MPMX26_00181 at 196.077 kb on - strand, within MPMX26_00181 at 196.083 kb on - strand, within MPMX26_00181 at 196.083 kb on - strand, within MPMX26_00181 at 196.083 kb on - strand, within MPMX26_00181 at 196.087 kb on - strand, within MPMX26_00181 at 196.087 kb on - strand, within MPMX26_00181 at 196.088 kb on - strand, within MPMX26_00181 at 196.116 kb on - strand, within MPMX26_00181 at 196.133 kb on - strand, within MPMX26_00181 at 196.133 kb on - strand, within MPMX26_00181
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 192,311 - MPMX26_00178 0.70 -0.1 192,311 - MPMX26_00178 0.70 +0.3 192,332 - MPMX26_00178 0.73 +0.4 192,339 + MPMX26_00178 0.74 +0.1 192,342 - MPMX26_00178 0.74 -0.4 192,344 + MPMX26_00178 0.74 +0.8 192,361 - MPMX26_00178 0.77 -0.2 192,397 - MPMX26_00178 0.81 -0.0 192,424 - MPMX26_00178 0.84 +0.6 192,435 - MPMX26_00178 0.86 -0.5 192,442 - MPMX26_00178 0.87 +0.1 192,452 - MPMX26_00178 0.88 +0.1 192,452 - MPMX26_00178 0.88 -0.1 192,457 - MPMX26_00178 0.88 +0.0 192,542 - -0.8 192,586 - +0.3 192,597 - -0.5 192,597 - +0.6 192,742 - MPMX26_00179 0.29 +0.1 192,758 - MPMX26_00179 0.32 +0.1 192,758 - MPMX26_00179 0.32 +0.0 192,758 - MPMX26_00179 0.32 -0.1 192,758 - MPMX26_00179 0.32 -0.5 192,758 - MPMX26_00179 0.32 +0.1 192,771 + MPMX26_00179 0.34 -0.1 192,771 + MPMX26_00179 0.34 -1.3 192,774 - MPMX26_00179 0.34 -0.2 192,774 - MPMX26_00179 0.34 +0.1 192,774 - MPMX26_00179 0.34 +0.1 192,779 - MPMX26_00179 0.35 +0.2 192,779 - MPMX26_00179 0.35 +0.1 192,779 - MPMX26_00179 0.35 -0.2 192,779 - MPMX26_00179 0.35 -0.0 192,784 - MPMX26_00179 0.36 +0.7 192,784 - MPMX26_00179 0.36 +1.3 192,862 - MPMX26_00179 0.49 +0.1 192,863 - MPMX26_00179 0.49 +0.1 192,871 - MPMX26_00179 0.50 +0.4 192,873 - MPMX26_00179 0.50 +0.3 192,873 - MPMX26_00179 0.50 -0.4 192,873 - MPMX26_00179 0.50 +0.3 192,880 - MPMX26_00179 0.52 -0.3 192,902 - MPMX26_00179 0.55 -0.1 192,937 - MPMX26_00179 0.61 -0.2 192,953 - MPMX26_00179 0.63 -0.7 192,953 - MPMX26_00179 0.63 -0.2 192,953 - MPMX26_00179 0.63 -0.4 192,953 - MPMX26_00179 0.63 -0.2 192,953 - MPMX26_00179 0.63 +0.1 192,953 - MPMX26_00179 0.63 +0.2 192,953 - MPMX26_00179 0.63 -0.1 193,010 - MPMX26_00179 0.72 -0.5 193,042 - MPMX26_00179 0.78 -0.4 193,042 - MPMX26_00179 0.78 +0.5 193,045 - MPMX26_00179 0.78 -0.3 193,055 - MPMX26_00179 0.80 +0.4 193,107 - MPMX26_00179 0.88 +0.0 193,107 - MPMX26_00179 0.88 +0.3 193,107 - MPMX26_00179 0.88 +0.3 193,107 - MPMX26_00179 0.88 -0.5 193,163 - +0.3 193,173 - +0.6 193,173 - +0.3 193,183 - -0.4 193,224 + +0.1 193,275 + +0.3 193,275 + -0.3 193,283 - -0.0 193,293 - -0.5 193,308 - +0.4 193,360 + +0.3 193,360 + -1.0 193,373 - -0.7 193,377 + +0.0 193,385 - +0.3 193,413 - +1.4 193,461 + MPMX26_00180 0.11 -1.4 193,464 - MPMX26_00180 0.11 +0.0 193,492 + MPMX26_00180 0.12 -2.8 193,500 - MPMX26_00180 0.13 +0.2 193,500 - MPMX26_00180 0.13 -0.0 193,554 - MPMX26_00180 0.16 +0.3 193,554 - MPMX26_00180 0.16 -0.7 193,554 - MPMX26_00180 0.16 +0.8 193,554 - MPMX26_00180 0.16 +1.8 193,554 - MPMX26_00180 0.16 -0.1 193,554 - MPMX26_00180 0.16 +0.2 193,564 - MPMX26_00180 0.16 +0.3 193,577 - MPMX26_00180 0.17 -1.0 193,577 - MPMX26_00180 0.17 +0.4 193,596 - MPMX26_00180 0.18 +0.4 193,673 - MPMX26_00180 0.22 +0.5 193,673 - MPMX26_00180 0.22 -0.4 193,695 - MPMX26_00180 0.23 -1.6 193,700 + MPMX26_00180 0.23 +0.8 193,713 - MPMX26_00180 0.24 +0.3 193,736 - MPMX26_00180 0.25 +0.2 193,879 + MPMX26_00180 0.33 +1.1 193,887 - MPMX26_00180 0.33 -0.4 193,887 - MPMX26_00180 0.33 -0.8 193,887 - MPMX26_00180 0.33 +0.2 193,917 - MPMX26_00180 0.35 -0.7 193,917 - MPMX26_00180 0.35 +0.4 193,947 - MPMX26_00180 0.36 -1.2 194,096 - MPMX26_00180 0.44 -0.4 194,096 - MPMX26_00180 0.44 +0.1 194,096 - MPMX26_00180 0.44 -0.2 194,099 - MPMX26_00180 0.44 -0.7 194,117 + MPMX26_00180 0.45 +0.8 194,208 - MPMX26_00180 0.50 -1.6 194,296 + MPMX26_00180 0.55 -1.0 194,304 - MPMX26_00180 0.55 -0.7 194,304 - MPMX26_00180 0.55 -0.8 194,324 - MPMX26_00180 0.56 +1.1 194,324 - MPMX26_00180 0.56 -0.7 194,434 - MPMX26_00180 0.62 +0.3 194,444 - MPMX26_00180 0.63 +0.1 194,444 - MPMX26_00180 0.63 -0.2 194,546 - MPMX26_00180 0.68 +0.0 194,564 - MPMX26_00180 0.69 -0.5 194,615 - MPMX26_00180 0.72 -0.2 194,644 - MPMX26_00180 0.73 -0.2 194,646 - MPMX26_00180 0.73 +1.1 194,646 - MPMX26_00180 0.73 -1.0 194,646 - MPMX26_00180 0.73 -0.1 194,720 - MPMX26_00180 0.77 +0.2 194,754 - MPMX26_00180 0.79 +0.2 194,809 + MPMX26_00180 0.82 -0.3 194,817 - MPMX26_00180 0.82 +0.0 194,855 - MPMX26_00180 0.84 -0.4 194,948 - MPMX26_00180 0.89 +0.5 194,969 - -0.4 194,981 - +0.8 195,160 - -1.0 195,160 - -0.2 195,160 - +0.6 195,214 - -0.6 195,257 - -0.2 195,264 - -0.5 195,267 + +0.1 195,274 - -0.4 195,274 - -0.4 195,274 - -0.1 195,274 - -0.2 195,274 - +0.2 195,274 - +1.1 195,275 - +0.2 195,275 - +0.0 195,275 - +0.1 195,275 - -0.2 195,275 - -0.3 195,275 - +0.4 195,275 - +0.0 195,275 - +0.0 195,275 - +0.1 195,275 - -0.2 195,275 - -0.2 195,275 - -1.6 195,275 - -0.4 195,275 - -0.4 195,275 - +0.6 195,275 - -2.0 195,283 + +0.8 195,290 - -0.7 195,291 - -0.4 195,291 - +0.1 195,294 - +0.0 195,361 - -0.8 195,361 - -0.2 195,361 - -0.6 195,361 - +0.4 195,369 - +0.4 195,445 - +0.2 195,463 - -0.1 195,463 - -0.2 195,489 - -0.9 195,489 - +0.4 195,489 - +0.2 195,489 - +0.7 195,489 - -0.2 195,489 - -0.4 195,489 - -0.6 195,489 - -0.1 195,489 - -0.6 195,489 - +0.2 195,501 - -0.3 195,501 - +0.4 195,501 - -0.2 195,501 - -0.0 195,507 - -0.2 195,564 - MPMX26_00181 0.12 +0.5 195,616 - MPMX26_00181 0.17 -0.3 195,647 - MPMX26_00181 0.20 +0.1 195,648 - MPMX26_00181 0.20 -0.9 195,667 - MPMX26_00181 0.22 -0.7 195,667 - MPMX26_00181 0.22 -0.4 195,667 - MPMX26_00181 0.22 -0.2 195,667 - MPMX26_00181 0.22 -0.6 195,674 - MPMX26_00181 0.23 -0.7 195,682 - MPMX26_00181 0.23 -0.2 195,682 - MPMX26_00181 0.23 +0.4 195,697 - MPMX26_00181 0.25 +0.2 195,699 - MPMX26_00181 0.25 -0.1 195,735 - MPMX26_00181 0.28 -0.1 195,738 - MPMX26_00181 0.29 +0.1 195,738 - MPMX26_00181 0.29 -0.1 195,751 - MPMX26_00181 0.30 +1.0 195,759 - MPMX26_00181 0.31 +0.0 195,764 - MPMX26_00181 0.31 +0.2 195,771 - MPMX26_00181 0.32 +0.5 195,812 - MPMX26_00181 0.36 +0.1 195,820 - MPMX26_00181 0.36 +0.1 195,820 - MPMX26_00181 0.36 -0.3 195,858 - MPMX26_00181 0.40 -0.5 195,858 - MPMX26_00181 0.40 +0.2 195,877 - MPMX26_00181 0.42 +0.3 195,921 - MPMX26_00181 0.46 -0.1 195,921 - MPMX26_00181 0.46 -0.2 195,921 - MPMX26_00181 0.46 -0.3 195,932 - MPMX26_00181 0.47 -0.5 196,039 - MPMX26_00181 0.57 -0.2 196,044 - MPMX26_00181 0.57 -0.6 196,044 - MPMX26_00181 0.57 -0.1 196,057 + MPMX26_00181 0.59 +0.0 196,077 - MPMX26_00181 0.61 +0.0 196,083 - MPMX26_00181 0.61 -1.8 196,083 - MPMX26_00181 0.61 +0.2 196,083 - MPMX26_00181 0.61 -0.1 196,087 - MPMX26_00181 0.62 -0.7 196,087 - MPMX26_00181 0.62 -1.0 196,088 - MPMX26_00181 0.62 -0.3 196,116 - MPMX26_00181 0.64 -0.3 196,133 - MPMX26_00181 0.66 -0.2 196,133 - MPMX26_00181 0.66 +1.5
Or see this region's nucleotide sequence