Experiment: amylopectin from maize 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05326 and BACOVA_05327 are separated by 79 nucleotides BACOVA_05327 and BACOVA_05328 overlap by 8 nucleotides BACOVA_05328 and BACOVA_05329 are separated by 46 nucleotides
BACOVA_05326: BACOVA_05326 - hypothetical protein, at 812,221 to 812,745
_05326
BACOVA_05327: BACOVA_05327 - type I restriction modification DNA specificity domain protein, at 812,825 to 813,439
_05327
BACOVA_05328: BACOVA_05328 - type I restriction modification DNA specificity domain protein, at 813,432 to 814,661
_05328
BACOVA_05329: BACOVA_05329 - type I restriction-modification system, M subunit, at 814,708 to 816,252
_05329
Position (kb) 813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 812.433 kb on + strand, within BACOVA_05326 at 812.433 kb on + strand, within BACOVA_05326 at 812.434 kb on - strand, within BACOVA_05326 at 812.434 kb on - strand, within BACOVA_05326 at 812.435 kb on + strand, within BACOVA_05326 at 812.435 kb on + strand, within BACOVA_05326 at 812.441 kb on + strand, within BACOVA_05326 at 812.441 kb on + strand, within BACOVA_05326 at 812.442 kb on - strand, within BACOVA_05326 at 812.461 kb on + strand, within BACOVA_05326 at 812.547 kb on + strand, within BACOVA_05326 at 812.548 kb on - strand, within BACOVA_05326 at 812.556 kb on - strand, within BACOVA_05326 at 812.576 kb on - strand, within BACOVA_05326 at 812.590 kb on + strand, within BACOVA_05326 at 812.590 kb on + strand, within BACOVA_05326 at 812.619 kb on + strand, within BACOVA_05326 at 812.678 kb on - strand, within BACOVA_05326 at 812.686 kb on - strand, within BACOVA_05326 at 812.686 kb on - strand, within BACOVA_05326 at 812.701 kb on + strand at 812.701 kb on + strand at 812.702 kb on - strand at 812.702 kb on - strand at 812.715 kb on + strand at 812.751 kb on + strand at 812.752 kb on - strand at 812.796 kb on + strand at 812.797 kb on - strand at 812.812 kb on - strand at 812.812 kb on - strand at 812.831 kb on + strand at 812.833 kb on + strand at 812.833 kb on + strand at 812.834 kb on - strand at 812.834 kb on - strand at 812.834 kb on - strand at 812.846 kb on - strand at 812.856 kb on + strand at 812.857 kb on - strand at 812.857 kb on - strand at 812.942 kb on - strand, within BACOVA_05327 at 812.948 kb on + strand, within BACOVA_05327 at 812.952 kb on - strand, within BACOVA_05327 at 812.953 kb on + strand, within BACOVA_05327 at 812.977 kb on + strand, within BACOVA_05327 at 812.978 kb on - strand, within BACOVA_05327 at 813.001 kb on + strand, within BACOVA_05327 at 813.001 kb on + strand, within BACOVA_05327 at 813.001 kb on + strand, within BACOVA_05327 at 813.001 kb on + strand, within BACOVA_05327 at 813.001 kb on + strand, within BACOVA_05327 at 813.002 kb on - strand, within BACOVA_05327 at 813.005 kb on + strand, within BACOVA_05327 at 813.005 kb on + strand, within BACOVA_05327 at 813.006 kb on - strand, within BACOVA_05327 at 813.078 kb on - strand, within BACOVA_05327 at 813.078 kb on - strand, within BACOVA_05327 at 813.080 kb on - strand, within BACOVA_05327 at 813.084 kb on + strand, within BACOVA_05327 at 813.084 kb on + strand, within BACOVA_05327 at 813.084 kb on + strand, within BACOVA_05327 at 813.088 kb on - strand, within BACOVA_05327 at 813.117 kb on + strand, within BACOVA_05327 at 813.136 kb on + strand, within BACOVA_05327 at 813.186 kb on + strand, within BACOVA_05327 at 813.216 kb on - strand, within BACOVA_05327 at 813.220 kb on + strand, within BACOVA_05327 at 813.220 kb on + strand, within BACOVA_05327 at 813.220 kb on + strand, within BACOVA_05327 at 813.221 kb on - strand, within BACOVA_05327 at 813.221 kb on - strand, within BACOVA_05327 at 813.230 kb on + strand, within BACOVA_05327 at 813.316 kb on + strand, within BACOVA_05327 at 813.317 kb on - strand, within BACOVA_05327 at 813.385 kb on - strand at 813.385 kb on - strand at 813.385 kb on - strand at 813.388 kb on + strand at 813.388 kb on + strand at 813.413 kb on + strand at 813.414 kb on - strand at 813.433 kb on + strand at 813.434 kb on - strand at 813.436 kb on - strand at 813.484 kb on - strand at 813.500 kb on + strand at 813.517 kb on + strand at 813.517 kb on + strand at 813.526 kb on - strand at 813.526 kb on - strand at 813.552 kb on - strand at 813.580 kb on + strand, within BACOVA_05328 at 813.588 kb on + strand, within BACOVA_05328 at 813.637 kb on - strand, within BACOVA_05328 at 813.641 kb on + strand, within BACOVA_05328 at 813.645 kb on - strand, within BACOVA_05328 at 813.678 kb on + strand, within BACOVA_05328 at 813.679 kb on - strand, within BACOVA_05328 at 813.735 kb on + strand, within BACOVA_05328 at 813.735 kb on + strand, within BACOVA_05328 at 813.739 kb on + strand, within BACOVA_05328 at 813.752 kb on + strand, within BACOVA_05328 at 813.790 kb on - strand, within BACOVA_05328 at 813.793 kb on - strand, within BACOVA_05328 at 813.793 kb on - strand, within BACOVA_05328 at 813.793 kb on - strand, within BACOVA_05328 at 813.797 kb on + strand, within BACOVA_05328 at 813.828 kb on + strand, within BACOVA_05328 at 813.828 kb on + strand, within BACOVA_05328 at 813.828 kb on + strand, within BACOVA_05328 at 813.830 kb on + strand, within BACOVA_05328 at 813.849 kb on + strand, within BACOVA_05328 at 813.849 kb on + strand, within BACOVA_05328 at 813.850 kb on - strand, within BACOVA_05328 at 813.850 kb on - strand, within BACOVA_05328 at 813.873 kb on + strand, within BACOVA_05328 at 813.874 kb on - strand, within BACOVA_05328 at 813.874 kb on - strand, within BACOVA_05328 at 813.875 kb on + strand, within BACOVA_05328 at 813.900 kb on + strand, within BACOVA_05328 at 813.901 kb on - strand, within BACOVA_05328 at 813.935 kb on - strand, within BACOVA_05328 at 813.978 kb on - strand, within BACOVA_05328 at 813.990 kb on + strand, within BACOVA_05328 at 813.991 kb on - strand, within BACOVA_05328 at 813.991 kb on - strand, within BACOVA_05328 at 813.991 kb on - strand, within BACOVA_05328 at 813.992 kb on + strand, within BACOVA_05328 at 814.088 kb on + strand, within BACOVA_05328 at 814.088 kb on + strand, within BACOVA_05328 at 814.089 kb on - strand, within BACOVA_05328 at 814.109 kb on + strand, within BACOVA_05328 at 814.147 kb on + strand, within BACOVA_05328 at 814.147 kb on + strand, within BACOVA_05328 at 814.148 kb on - strand, within BACOVA_05328 at 814.170 kb on - strand, within BACOVA_05328 at 814.178 kb on - strand, within BACOVA_05328 at 814.182 kb on - strand, within BACOVA_05328 at 814.211 kb on - strand, within BACOVA_05328 at 814.216 kb on - strand, within BACOVA_05328 at 814.241 kb on + strand, within BACOVA_05328 at 814.295 kb on + strand, within BACOVA_05328 at 814.295 kb on + strand, within BACOVA_05328 at 814.296 kb on - strand, within BACOVA_05328 at 814.296 kb on - strand, within BACOVA_05328 at 814.329 kb on - strand, within BACOVA_05328 at 814.372 kb on - strand, within BACOVA_05328 at 814.372 kb on - strand, within BACOVA_05328 at 814.407 kb on + strand, within BACOVA_05328 at 814.408 kb on - strand, within BACOVA_05328 at 814.408 kb on - strand, within BACOVA_05328 at 814.408 kb on - strand, within BACOVA_05328 at 814.408 kb on - strand, within BACOVA_05328 at 814.459 kb on - strand, within BACOVA_05328 at 814.459 kb on - strand, within BACOVA_05328 at 814.461 kb on - strand, within BACOVA_05328 at 814.462 kb on + strand, within BACOVA_05328 at 814.463 kb on - strand, within BACOVA_05328 at 814.497 kb on + strand, within BACOVA_05328 at 814.498 kb on - strand, within BACOVA_05328 at 814.500 kb on - strand, within BACOVA_05328 at 814.538 kb on + strand, within BACOVA_05328 at 814.539 kb on - strand at 814.549 kb on + strand at 814.550 kb on - strand at 814.571 kb on + strand at 814.595 kb on + strand at 814.595 kb on + strand at 814.631 kb on + strand at 814.646 kb on + strand at 814.647 kb on - strand at 814.717 kb on + strand at 814.737 kb on - strand at 814.737 kb on - strand at 814.809 kb on + strand at 814.812 kb on - strand at 814.813 kb on + strand at 814.935 kb on - strand, within BACOVA_05329 at 814.939 kb on - strand, within BACOVA_05329 at 815.014 kb on + strand, within BACOVA_05329 at 815.026 kb on - strand, within BACOVA_05329 at 815.028 kb on + strand, within BACOVA_05329 at 815.028 kb on + strand, within BACOVA_05329 at 815.029 kb on - strand, within BACOVA_05329 at 815.029 kb on - strand, within BACOVA_05329 at 815.054 kb on - strand, within BACOVA_05329 at 815.059 kb on + strand, within BACOVA_05329 at 815.059 kb on + strand, within BACOVA_05329 at 815.060 kb on - strand, within BACOVA_05329 at 815.060 kb on - strand, within BACOVA_05329 at 815.065 kb on - strand, within BACOVA_05329 at 815.076 kb on + strand, within BACOVA_05329 at 815.078 kb on + strand, within BACOVA_05329 at 815.183 kb on - strand, within BACOVA_05329 at 815.234 kb on + strand, within BACOVA_05329 at 815.235 kb on - strand, within BACOVA_05329 at 815.268 kb on + strand, within BACOVA_05329 at 815.282 kb on - strand, within BACOVA_05329 at 815.299 kb on - strand, within BACOVA_05329 at 815.366 kb on - strand, within BACOVA_05329 at 815.404 kb on + strand, within BACOVA_05329 at 815.404 kb on + strand, within BACOVA_05329 at 815.409 kb on + strand, within BACOVA_05329 at 815.410 kb on - strand, within BACOVA_05329 at 815.443 kb on + strand, within BACOVA_05329 at 815.460 kb on + strand, within BACOVA_05329 at 815.469 kb on + strand, within BACOVA_05329 at 815.470 kb on - strand, within BACOVA_05329 at 815.512 kb on - strand, within BACOVA_05329 at 815.512 kb on - strand, within BACOVA_05329 at 815.523 kb on + strand, within BACOVA_05329 at 815.538 kb on + strand, within BACOVA_05329
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C) remove 812,433 + BACOVA_05326 0.40 -0.2 812,433 + BACOVA_05326 0.40 +1.5 812,434 - BACOVA_05326 0.41 +1.0 812,434 - BACOVA_05326 0.41 +0.2 812,435 + BACOVA_05326 0.41 -1.5 812,435 + BACOVA_05326 0.41 +0.8 812,441 + BACOVA_05326 0.42 +2.3 812,441 + BACOVA_05326 0.42 +0.5 812,442 - BACOVA_05326 0.42 -0.5 812,461 + BACOVA_05326 0.46 -0.8 812,547 + BACOVA_05326 0.62 -0.4 812,548 - BACOVA_05326 0.62 +3.4 812,556 - BACOVA_05326 0.64 +0.6 812,576 - BACOVA_05326 0.68 -0.1 812,590 + BACOVA_05326 0.70 +1.7 812,590 + BACOVA_05326 0.70 -0.6 812,619 + BACOVA_05326 0.76 -0.6 812,678 - BACOVA_05326 0.87 -2.0 812,686 - BACOVA_05326 0.89 -0.4 812,686 - BACOVA_05326 0.89 +0.8 812,701 + +2.8 812,701 + -0.4 812,702 - +1.1 812,702 - +1.0 812,715 + -0.6 812,751 + -0.8 812,752 - +1.1 812,796 + -0.3 812,797 - +0.6 812,812 - -0.0 812,812 - +1.1 812,831 + +0.4 812,833 + +1.5 812,833 + +0.5 812,834 - -0.8 812,834 - -0.3 812,834 - +0.8 812,846 - -0.2 812,856 + -1.1 812,857 - -0.9 812,857 - +2.9 812,942 - BACOVA_05327 0.19 +2.6 812,948 + BACOVA_05327 0.20 -2.9 812,952 - BACOVA_05327 0.21 +0.2 812,953 + BACOVA_05327 0.21 -1.3 812,977 + BACOVA_05327 0.25 +0.6 812,978 - BACOVA_05327 0.25 -2.6 813,001 + BACOVA_05327 0.29 -0.4 813,001 + BACOVA_05327 0.29 -0.6 813,001 + BACOVA_05327 0.29 +2.6 813,001 + BACOVA_05327 0.29 -0.9 813,001 + BACOVA_05327 0.29 +0.2 813,002 - BACOVA_05327 0.29 +0.6 813,005 + BACOVA_05327 0.29 -0.4 813,005 + BACOVA_05327 0.29 -1.9 813,006 - BACOVA_05327 0.29 -0.1 813,078 - BACOVA_05327 0.41 -1.1 813,078 - BACOVA_05327 0.41 -1.0 813,080 - BACOVA_05327 0.41 +2.2 813,084 + BACOVA_05327 0.42 -0.5 813,084 + BACOVA_05327 0.42 +3.1 813,084 + BACOVA_05327 0.42 -0.4 813,088 - BACOVA_05327 0.43 -0.2 813,117 + BACOVA_05327 0.47 -0.6 813,136 + BACOVA_05327 0.51 -0.6 813,186 + BACOVA_05327 0.59 -0.2 813,216 - BACOVA_05327 0.64 +0.7 813,220 + BACOVA_05327 0.64 -0.9 813,220 + BACOVA_05327 0.64 +0.2 813,220 + BACOVA_05327 0.64 -2.0 813,221 - BACOVA_05327 0.64 -0.8 813,221 - BACOVA_05327 0.64 +2.6 813,230 + BACOVA_05327 0.66 -1.6 813,316 + BACOVA_05327 0.80 -1.1 813,317 - BACOVA_05327 0.80 -0.0 813,385 - -0.4 813,385 - +2.4 813,385 - -0.7 813,388 + -0.1 813,388 + -0.9 813,413 + -2.0 813,414 - -0.7 813,433 + -0.0 813,434 - -0.6 813,436 - -0.1 813,484 - -3.3 813,500 + +1.4 813,517 + +1.0 813,517 + +1.0 813,526 - -1.1 813,526 - +1.1 813,552 - -0.8 813,580 + BACOVA_05328 0.12 -0.2 813,588 + BACOVA_05328 0.13 +1.8 813,637 - BACOVA_05328 0.17 -0.5 813,641 + BACOVA_05328 0.17 +0.9 813,645 - BACOVA_05328 0.17 +0.4 813,678 + BACOVA_05328 0.20 -0.2 813,679 - BACOVA_05328 0.20 +1.7 813,735 + BACOVA_05328 0.25 +1.2 813,735 + BACOVA_05328 0.25 -1.7 813,739 + BACOVA_05328 0.25 +0.5 813,752 + BACOVA_05328 0.26 -0.1 813,790 - BACOVA_05328 0.29 +0.5 813,793 - BACOVA_05328 0.29 -2.8 813,793 - BACOVA_05328 0.29 +0.6 813,793 - BACOVA_05328 0.29 -0.4 813,797 + BACOVA_05328 0.30 -0.4 813,828 + BACOVA_05328 0.32 -0.1 813,828 + BACOVA_05328 0.32 +3.1 813,828 + BACOVA_05328 0.32 -0.2 813,830 + BACOVA_05328 0.32 -0.7 813,849 + BACOVA_05328 0.34 +0.9 813,849 + BACOVA_05328 0.34 +5.0 813,850 - BACOVA_05328 0.34 -1.2 813,850 - BACOVA_05328 0.34 -0.2 813,873 + BACOVA_05328 0.36 +1.1 813,874 - BACOVA_05328 0.36 +0.5 813,874 - BACOVA_05328 0.36 -1.5 813,875 + BACOVA_05328 0.36 -1.0 813,900 + BACOVA_05328 0.38 +1.2 813,901 - BACOVA_05328 0.38 -0.8 813,935 - BACOVA_05328 0.41 -1.2 813,978 - BACOVA_05328 0.44 -0.4 813,990 + BACOVA_05328 0.45 -0.3 813,991 - BACOVA_05328 0.45 -1.6 813,991 - BACOVA_05328 0.45 +1.7 813,991 - BACOVA_05328 0.45 -0.2 813,992 + BACOVA_05328 0.46 +2.5 814,088 + BACOVA_05328 0.53 +1.8 814,088 + BACOVA_05328 0.53 -0.5 814,089 - BACOVA_05328 0.53 -0.2 814,109 + BACOVA_05328 0.55 +0.1 814,147 + BACOVA_05328 0.58 +1.9 814,147 + BACOVA_05328 0.58 -1.4 814,148 - BACOVA_05328 0.58 -1.6 814,170 - BACOVA_05328 0.60 -2.1 814,178 - BACOVA_05328 0.61 +3.3 814,182 - BACOVA_05328 0.61 +0.0 814,211 - BACOVA_05328 0.63 -1.8 814,216 - BACOVA_05328 0.64 +1.8 814,241 + BACOVA_05328 0.66 -1.3 814,295 + BACOVA_05328 0.70 +0.9 814,295 + BACOVA_05328 0.70 +1.5 814,296 - BACOVA_05328 0.70 +2.6 814,296 - BACOVA_05328 0.70 -0.6 814,329 - BACOVA_05328 0.73 -0.6 814,372 - BACOVA_05328 0.76 -0.9 814,372 - BACOVA_05328 0.76 -0.7 814,407 + BACOVA_05328 0.79 +2.9 814,408 - BACOVA_05328 0.79 -0.5 814,408 - BACOVA_05328 0.79 +0.6 814,408 - BACOVA_05328 0.79 -1.0 814,408 - BACOVA_05328 0.79 +1.8 814,459 - BACOVA_05328 0.83 -2.1 814,459 - BACOVA_05328 0.83 -2.5 814,461 - BACOVA_05328 0.84 +2.5 814,462 + BACOVA_05328 0.84 -1.0 814,463 - BACOVA_05328 0.84 -1.8 814,497 + BACOVA_05328 0.87 -0.2 814,498 - BACOVA_05328 0.87 -0.8 814,500 - BACOVA_05328 0.87 -0.8 814,538 + BACOVA_05328 0.90 -0.2 814,539 - -1.4 814,549 + -0.9 814,550 - +1.2 814,571 + -1.0 814,595 + -0.2 814,595 + +1.0 814,631 + +0.6 814,646 + +2.6 814,647 - +1.8 814,717 + +3.9 814,737 - -0.0 814,737 - +0.0 814,809 + -0.0 814,812 - +0.3 814,813 + -2.5 814,935 - BACOVA_05329 0.15 -0.4 814,939 - BACOVA_05329 0.15 +0.9 815,014 + BACOVA_05329 0.20 -0.9 815,026 - BACOVA_05329 0.21 -1.9 815,028 + BACOVA_05329 0.21 +0.7 815,028 + BACOVA_05329 0.21 -1.4 815,029 - BACOVA_05329 0.21 -0.0 815,029 - BACOVA_05329 0.21 -0.8 815,054 - BACOVA_05329 0.22 +0.7 815,059 + BACOVA_05329 0.23 -1.3 815,059 + BACOVA_05329 0.23 -0.2 815,060 - BACOVA_05329 0.23 +1.8 815,060 - BACOVA_05329 0.23 +0.3 815,065 - BACOVA_05329 0.23 +2.2 815,076 + BACOVA_05329 0.24 +3.9 815,078 + BACOVA_05329 0.24 -0.4 815,183 - BACOVA_05329 0.31 -0.5 815,234 + BACOVA_05329 0.34 -0.5 815,235 - BACOVA_05329 0.34 +0.5 815,268 + BACOVA_05329 0.36 +0.5 815,282 - BACOVA_05329 0.37 -1.2 815,299 - BACOVA_05329 0.38 -1.9 815,366 - BACOVA_05329 0.43 +2.6 815,404 + BACOVA_05329 0.45 +2.1 815,404 + BACOVA_05329 0.45 +0.4 815,409 + BACOVA_05329 0.45 -0.8 815,410 - BACOVA_05329 0.45 -0.4 815,443 + BACOVA_05329 0.48 -1.3 815,460 + BACOVA_05329 0.49 -0.6 815,469 + BACOVA_05329 0.49 +0.8 815,470 - BACOVA_05329 0.49 -3.1 815,512 - BACOVA_05329 0.52 +0.4 815,512 - BACOVA_05329 0.52 +1.8 815,523 + BACOVA_05329 0.53 +1.7 815,538 + BACOVA_05329 0.54 -1.7
Or see this region's nucleotide sequence