Experiment: amylopectin from maize 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05306 and BACOVA_05307 are separated by 75 nucleotides BACOVA_05307 and BACOVA_05308 are separated by 120 nucleotides BACOVA_05308 and BACOVA_05309 are separated by 115 nucleotides
BACOVA_05306: BACOVA_05306 - pseudouridine synthase, RluA family, at 795,228 to 796,922
_05306
BACOVA_05307: BACOVA_05307 - hypothetical protein, at 796,998 to 797,525
_05307
BACOVA_05308: BACOVA_05308 - MaoC-like protein, at 797,646 to 798,110
_05308
BACOVA_05309: BACOVA_05309 - linear amide C-N hydrolase, choloylglycine hydrolase family protein, at 798,226 to 799,170
_05309
Position (kb) 796
797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 796.059 kb on + strand, within BACOVA_05306 at 796.072 kb on + strand, within BACOVA_05306 at 796.073 kb on - strand, within BACOVA_05306 at 796.073 kb on - strand, within BACOVA_05306 at 796.078 kb on + strand, within BACOVA_05306 at 796.092 kb on - strand, within BACOVA_05306 at 796.158 kb on + strand, within BACOVA_05306 at 796.159 kb on - strand, within BACOVA_05306 at 796.398 kb on - strand, within BACOVA_05306 at 796.519 kb on + strand, within BACOVA_05306 at 796.566 kb on + strand, within BACOVA_05306 at 796.567 kb on - strand, within BACOVA_05306 at 796.567 kb on - strand, within BACOVA_05306 at 796.633 kb on + strand, within BACOVA_05306 at 796.633 kb on + strand, within BACOVA_05306 at 796.712 kb on + strand, within BACOVA_05306 at 796.713 kb on - strand, within BACOVA_05306 at 796.725 kb on - strand, within BACOVA_05306 at 796.770 kb on + strand at 796.770 kb on + strand at 796.850 kb on + strand at 796.851 kb on - strand at 796.917 kb on + strand at 796.918 kb on - strand at 796.918 kb on - strand at 796.929 kb on - strand at 796.930 kb on + strand at 796.931 kb on - strand at 796.932 kb on + strand at 796.932 kb on + strand at 796.933 kb on - strand at 796.934 kb on + strand at 796.935 kb on - strand at 796.935 kb on - strand at 796.950 kb on + strand at 796.951 kb on - strand at 796.982 kb on + strand at 796.983 kb on - strand at 797.003 kb on + strand at 797.003 kb on + strand at 797.003 kb on + strand at 797.003 kb on + strand at 797.100 kb on + strand, within BACOVA_05307 at 797.128 kb on - strand, within BACOVA_05307 at 797.192 kb on + strand, within BACOVA_05307 at 797.217 kb on - strand, within BACOVA_05307 at 797.277 kb on + strand, within BACOVA_05307 at 797.300 kb on + strand, within BACOVA_05307 at 797.300 kb on + strand, within BACOVA_05307 at 797.307 kb on + strand, within BACOVA_05307 at 797.308 kb on - strand, within BACOVA_05307 at 797.316 kb on + strand, within BACOVA_05307 at 797.317 kb on - strand, within BACOVA_05307 at 797.403 kb on - strand, within BACOVA_05307 at 797.482 kb on - strand at 797.534 kb on + strand at 797.535 kb on - strand at 797.538 kb on + strand at 797.538 kb on + strand at 797.556 kb on + strand at 797.576 kb on + strand at 797.577 kb on - strand at 797.617 kb on - strand at 797.617 kb on - strand at 797.620 kb on + strand at 797.621 kb on - strand at 797.692 kb on + strand at 797.692 kb on + strand at 797.704 kb on + strand, within BACOVA_05308 at 797.742 kb on - strand, within BACOVA_05308 at 797.788 kb on + strand, within BACOVA_05308 at 797.789 kb on - strand, within BACOVA_05308 at 797.809 kb on + strand, within BACOVA_05308 at 797.810 kb on - strand, within BACOVA_05308 at 797.813 kb on + strand, within BACOVA_05308 at 797.826 kb on - strand, within BACOVA_05308 at 797.826 kb on - strand, within BACOVA_05308 at 797.869 kb on - strand, within BACOVA_05308 at 797.894 kb on - strand, within BACOVA_05308 at 797.897 kb on + strand, within BACOVA_05308 at 797.898 kb on - strand, within BACOVA_05308 at 797.919 kb on + strand, within BACOVA_05308 at 797.920 kb on - strand, within BACOVA_05308 at 797.920 kb on - strand, within BACOVA_05308 at 797.954 kb on - strand, within BACOVA_05308 at 797.984 kb on + strand, within BACOVA_05308 at 798.088 kb on + strand at 798.089 kb on - strand at 798.096 kb on + strand at 798.159 kb on - strand at 798.313 kb on - strand at 798.316 kb on + strand at 798.316 kb on + strand at 798.317 kb on - strand at 798.375 kb on + strand, within BACOVA_05309 at 798.375 kb on + strand, within BACOVA_05309 at 798.379 kb on - strand, within BACOVA_05309 at 798.405 kb on - strand, within BACOVA_05309 at 798.482 kb on + strand, within BACOVA_05309 at 798.496 kb on - strand, within BACOVA_05309 at 798.514 kb on + strand, within BACOVA_05309
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C) remove 796,059 + BACOVA_05306 0.49 -0.9 796,072 + BACOVA_05306 0.50 +1.8 796,073 - BACOVA_05306 0.50 +0.1 796,073 - BACOVA_05306 0.50 +0.1 796,078 + BACOVA_05306 0.50 -0.2 796,092 - BACOVA_05306 0.51 +0.2 796,158 + BACOVA_05306 0.55 -0.9 796,159 - BACOVA_05306 0.55 +1.9 796,398 - BACOVA_05306 0.69 -0.2 796,519 + BACOVA_05306 0.76 +0.9 796,566 + BACOVA_05306 0.79 -1.3 796,567 - BACOVA_05306 0.79 -2.1 796,567 - BACOVA_05306 0.79 +1.0 796,633 + BACOVA_05306 0.83 -2.6 796,633 + BACOVA_05306 0.83 +0.7 796,712 + BACOVA_05306 0.88 -0.7 796,713 - BACOVA_05306 0.88 +0.0 796,725 - BACOVA_05306 0.88 -1.9 796,770 + +2.0 796,770 + -1.2 796,850 + -0.3 796,851 - -1.2 796,917 + +1.7 796,918 - -2.5 796,918 - -1.2 796,929 - -1.9 796,930 + -1.9 796,931 - -1.8 796,932 + -1.2 796,932 + -0.1 796,933 - +0.2 796,934 + +2.6 796,935 - -1.3 796,935 - -0.5 796,950 + -0.2 796,951 - +0.7 796,982 + -1.2 796,983 - -0.4 797,003 + +0.8 797,003 + -1.2 797,003 + +1.9 797,003 + -1.7 797,100 + BACOVA_05307 0.19 -0.7 797,128 - BACOVA_05307 0.25 -1.2 797,192 + BACOVA_05307 0.37 -0.5 797,217 - BACOVA_05307 0.41 -0.2 797,277 + BACOVA_05307 0.53 +2.8 797,300 + BACOVA_05307 0.57 +1.2 797,300 + BACOVA_05307 0.57 -0.7 797,307 + BACOVA_05307 0.59 -1.1 797,308 - BACOVA_05307 0.59 +0.9 797,316 + BACOVA_05307 0.60 -0.2 797,317 - BACOVA_05307 0.60 +1.8 797,403 - BACOVA_05307 0.77 +1.5 797,482 - +0.8 797,534 + -1.7 797,535 - +1.5 797,538 + -0.9 797,538 + +1.8 797,556 + -1.1 797,576 + -1.8 797,577 - +3.8 797,617 - -0.6 797,617 - -1.4 797,620 + +0.6 797,621 - -1.4 797,692 + -0.2 797,692 + -1.9 797,704 + BACOVA_05308 0.12 -0.0 797,742 - BACOVA_05308 0.21 -0.9 797,788 + BACOVA_05308 0.31 +2.6 797,789 - BACOVA_05308 0.31 -0.2 797,809 + BACOVA_05308 0.35 -3.3 797,810 - BACOVA_05308 0.35 -1.1 797,813 + BACOVA_05308 0.36 -1.4 797,826 - BACOVA_05308 0.39 +0.3 797,826 - BACOVA_05308 0.39 +2.0 797,869 - BACOVA_05308 0.48 +0.1 797,894 - BACOVA_05308 0.53 -1.6 797,897 + BACOVA_05308 0.54 -1.6 797,898 - BACOVA_05308 0.54 +1.0 797,919 + BACOVA_05308 0.59 -2.3 797,920 - BACOVA_05308 0.59 -0.6 797,920 - BACOVA_05308 0.59 -0.0 797,954 - BACOVA_05308 0.66 -0.0 797,984 + BACOVA_05308 0.73 +0.4 798,088 + -1.2 798,089 - +2.6 798,096 + -0.0 798,159 - -1.6 798,313 - +1.4 798,316 + +0.1 798,316 + -0.1 798,317 - -0.0 798,375 + BACOVA_05309 0.16 -0.0 798,375 + BACOVA_05309 0.16 -0.2 798,379 - BACOVA_05309 0.16 +1.7 798,405 - BACOVA_05309 0.19 +2.2 798,482 + BACOVA_05309 0.27 -2.5 798,496 - BACOVA_05309 0.29 +3.0 798,514 + BACOVA_05309 0.30 -0.3
Or see this region's nucleotide sequence