Experiment: amylopectin from maize 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04968 and BACOVA_04969 are separated by 102 nucleotides BACOVA_04969 and BACOVA_04970 are separated by 130 nucleotides BACOVA_04970 and BACOVA_04971 are separated by 84 nucleotides BACOVA_04971 and BACOVA_04972 are separated by 72 nucleotides
BACOVA_04968: BACOVA_04968 - hypothetical protein, at 414,438 to 416,198
_04968
BACOVA_04969: BACOVA_04969 - hypothetical protein, at 416,301 to 416,405
_04969
BACOVA_04970: BACOVA_04970 - hypothetical protein, at 416,536 to 416,640
_04970
BACOVA_04971: BACOVA_04971 - hypothetical protein, at 416,725 to 416,838
_04971
BACOVA_04972: BACOVA_04972 - GDSL-like protein, at 416,911 to 418,545
_04972
Position (kb) 416
417 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 415.313 kb on + strand, within BACOVA_04968 at 415.364 kb on - strand, within BACOVA_04968 at 415.383 kb on - strand, within BACOVA_04968 at 415.478 kb on + strand, within BACOVA_04968 at 415.479 kb on - strand, within BACOVA_04968 at 415.500 kb on - strand, within BACOVA_04968 at 415.512 kb on - strand, within BACOVA_04968 at 415.514 kb on + strand, within BACOVA_04968 at 415.545 kb on - strand, within BACOVA_04968 at 415.601 kb on - strand, within BACOVA_04968 at 415.609 kb on + strand, within BACOVA_04968 at 415.610 kb on - strand, within BACOVA_04968 at 415.610 kb on - strand, within BACOVA_04968 at 415.665 kb on + strand, within BACOVA_04968 at 415.676 kb on + strand, within BACOVA_04968 at 415.677 kb on - strand, within BACOVA_04968 at 415.687 kb on + strand, within BACOVA_04968 at 415.734 kb on + strand, within BACOVA_04968 at 415.740 kb on + strand, within BACOVA_04968 at 415.742 kb on + strand, within BACOVA_04968 at 415.745 kb on - strand, within BACOVA_04968 at 415.779 kb on + strand, within BACOVA_04968 at 415.780 kb on - strand, within BACOVA_04968 at 415.805 kb on - strand, within BACOVA_04968 at 415.816 kb on + strand, within BACOVA_04968 at 415.817 kb on - strand, within BACOVA_04968 at 415.817 kb on - strand, within BACOVA_04968 at 415.817 kb on - strand, within BACOVA_04968 at 415.853 kb on - strand, within BACOVA_04968 at 415.866 kb on - strand, within BACOVA_04968 at 415.866 kb on - strand, within BACOVA_04968 at 415.937 kb on + strand, within BACOVA_04968 at 415.962 kb on + strand, within BACOVA_04968 at 415.962 kb on + strand, within BACOVA_04968 at 415.981 kb on + strand, within BACOVA_04968 at 416.004 kb on + strand, within BACOVA_04968 at 416.007 kb on + strand, within BACOVA_04968 at 416.008 kb on - strand, within BACOVA_04968 at 416.018 kb on - strand, within BACOVA_04968 at 416.041 kb on - strand at 416.080 kb on + strand at 416.080 kb on + strand at 416.110 kb on + strand at 416.110 kb on + strand at 416.111 kb on - strand at 416.220 kb on - strand at 416.269 kb on + strand at 416.270 kb on - strand at 416.273 kb on - strand at 416.318 kb on + strand, within BACOVA_04969 at 416.349 kb on - strand, within BACOVA_04969 at 416.351 kb on - strand, within BACOVA_04969 at 416.360 kb on + strand, within BACOVA_04969 at 416.404 kb on - strand at 416.404 kb on - strand at 416.457 kb on + strand at 416.489 kb on + strand at 416.490 kb on - strand at 416.528 kb on + strand at 416.529 kb on - strand at 416.573 kb on + strand, within BACOVA_04970 at 416.633 kb on - strand at 416.816 kb on + strand, within BACOVA_04971 at 416.866 kb on - strand at 416.866 kb on - strand at 416.921 kb on + strand at 416.922 kb on - strand at 416.958 kb on + strand at 416.958 kb on + strand at 417.007 kb on - strand at 417.019 kb on - strand at 417.186 kb on + strand, within BACOVA_04972 at 417.193 kb on + strand, within BACOVA_04972 at 417.193 kb on + strand, within BACOVA_04972 at 417.264 kb on - strand, within BACOVA_04972 at 417.275 kb on + strand, within BACOVA_04972 at 417.276 kb on - strand, within BACOVA_04972 at 417.279 kb on + strand, within BACOVA_04972 at 417.279 kb on + strand, within BACOVA_04972 at 417.295 kb on + strand, within BACOVA_04972 at 417.349 kb on + strand, within BACOVA_04972 at 417.350 kb on - strand, within BACOVA_04972 at 417.350 kb on - strand, within BACOVA_04972 at 417.354 kb on + strand, within BACOVA_04972 at 417.358 kb on - strand, within BACOVA_04972 at 417.373 kb on - strand, within BACOVA_04972
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C) remove 415,313 + BACOVA_04968 0.50 -3.1 415,364 - BACOVA_04968 0.53 -0.3 415,383 - BACOVA_04968 0.54 -0.4 415,478 + BACOVA_04968 0.59 -0.2 415,479 - BACOVA_04968 0.59 -2.0 415,500 - BACOVA_04968 0.60 -1.1 415,512 - BACOVA_04968 0.61 -1.3 415,514 + BACOVA_04968 0.61 -0.5 415,545 - BACOVA_04968 0.63 -1.1 415,601 - BACOVA_04968 0.66 -1.9 415,609 + BACOVA_04968 0.66 +1.9 415,610 - BACOVA_04968 0.67 -0.9 415,610 - BACOVA_04968 0.67 -0.5 415,665 + BACOVA_04968 0.70 -2.9 415,676 + BACOVA_04968 0.70 -3.0 415,677 - BACOVA_04968 0.70 +1.0 415,687 + BACOVA_04968 0.71 -0.3 415,734 + BACOVA_04968 0.74 -2.1 415,740 + BACOVA_04968 0.74 -0.4 415,742 + BACOVA_04968 0.74 -0.3 415,745 - BACOVA_04968 0.74 +0.4 415,779 + BACOVA_04968 0.76 -0.6 415,780 - BACOVA_04968 0.76 -0.6 415,805 - BACOVA_04968 0.78 -1.4 415,816 + BACOVA_04968 0.78 +1.0 415,817 - BACOVA_04968 0.78 +0.6 415,817 - BACOVA_04968 0.78 +2.0 415,817 - BACOVA_04968 0.78 +0.8 415,853 - BACOVA_04968 0.80 +0.1 415,866 - BACOVA_04968 0.81 +0.4 415,866 - BACOVA_04968 0.81 -0.6 415,937 + BACOVA_04968 0.85 +1.8 415,962 + BACOVA_04968 0.87 -1.9 415,962 + BACOVA_04968 0.87 +1.7 415,981 + BACOVA_04968 0.88 +2.8 416,004 + BACOVA_04968 0.89 -0.9 416,007 + BACOVA_04968 0.89 -0.2 416,008 - BACOVA_04968 0.89 -0.6 416,018 - BACOVA_04968 0.90 -0.7 416,041 - -1.5 416,080 + -0.7 416,080 + -0.5 416,110 + -0.2 416,110 + +0.8 416,111 - -1.7 416,220 - -1.0 416,269 + -0.5 416,270 - -0.7 416,273 - +2.0 416,318 + BACOVA_04969 0.16 +1.7 416,349 - BACOVA_04969 0.46 -1.4 416,351 - BACOVA_04969 0.48 +0.1 416,360 + BACOVA_04969 0.56 +1.1 416,404 - -1.1 416,404 - +2.2 416,457 + +0.0 416,489 + -1.4 416,490 - -0.8 416,528 + -0.2 416,529 - -2.7 416,573 + BACOVA_04970 0.35 -0.6 416,633 - +0.4 416,816 + BACOVA_04971 0.80 +0.5 416,866 - +0.0 416,866 - -0.2 416,921 + -0.2 416,922 - +0.4 416,958 + +0.4 416,958 + +0.3 417,007 - -1.9 417,019 - +0.6 417,186 + BACOVA_04972 0.17 -0.0 417,193 + BACOVA_04972 0.17 -1.1 417,193 + BACOVA_04972 0.17 +1.8 417,264 - BACOVA_04972 0.22 -0.1 417,275 + BACOVA_04972 0.22 +1.6 417,276 - BACOVA_04972 0.22 +1.0 417,279 + BACOVA_04972 0.23 -1.5 417,279 + BACOVA_04972 0.23 -0.0 417,295 + BACOVA_04972 0.23 +0.6 417,349 + BACOVA_04972 0.27 +0.1 417,350 - BACOVA_04972 0.27 -0.3 417,350 - BACOVA_04972 0.27 -1.2 417,354 + BACOVA_04972 0.27 +0.1 417,358 - BACOVA_04972 0.27 -2.0 417,373 - BACOVA_04972 0.28 -2.1
Or see this region's nucleotide sequence