Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04397

Experiment: amylopectin from maize 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04395 and BACOVA_04396 are separated by 51 nucleotidesBACOVA_04396 and BACOVA_04397 overlap by 4 nucleotidesBACOVA_04397 and BACOVA_04398 are separated by 115 nucleotidesBACOVA_04398 and BACOVA_04400 are separated by 125 nucleotidesBACOVA_04400 and BACOVA_04399 overlap by 67 nucleotides BACOVA_04395: BACOVA_04395 - pullulanase, type I, at 307,513 to 309,519 _04395 BACOVA_04396: BACOVA_04396 - crossover junction endodeoxyribonuclease RuvC, at 309,571 to 310,137 _04396 BACOVA_04397: BACOVA_04397 - hypothetical protein, at 310,134 to 310,436 _04397 BACOVA_04398: BACOVA_04398 - tRNA-Ala, at 310,552 to 310,625 _04398 BACOVA_04400: BACOVA_04400 - hypothetical protein, at 310,751 to 310,888 _04400 BACOVA_04399: BACOVA_04399 - Sigma-70 region 2, at 310,822 to 311,481 _04399 Position (kb) 310 311Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 309.209 kb on + strand, within BACOVA_04395at 309.277 kb on + strand, within BACOVA_04395at 309.314 kb on + strand, within BACOVA_04395at 309.314 kb on + strand, within BACOVA_04395at 309.315 kb on - strand, within BACOVA_04395at 309.328 kb on + strandat 309.328 kb on + strandat 309.393 kb on + strandat 309.434 kb on + strandat 309.434 kb on + strandat 309.434 kb on + strandat 309.435 kb on - strandat 309.435 kb on - strandat 309.464 kb on - strandat 309.490 kb on + strandat 309.500 kb on + strandat 309.501 kb on - strandat 309.504 kb on + strandat 309.504 kb on + strandat 309.532 kb on + strandat 309.547 kb on + strandat 309.547 kb on + strandat 309.548 kb on - strandat 309.548 kb on - strandat 309.573 kb on - strandat 309.601 kb on - strandat 309.615 kb on + strandat 309.619 kb on - strandat 309.619 kb on - strandat 309.702 kb on + strand, within BACOVA_04396at 309.992 kb on + strand, within BACOVA_04396at 310.141 kb on - strandat 310.141 kb on - strandat 310.176 kb on - strand, within BACOVA_04397at 310.176 kb on - strand, within BACOVA_04397at 310.181 kb on + strand, within BACOVA_04397at 310.213 kb on - strand, within BACOVA_04397at 310.277 kb on - strand, within BACOVA_04397at 310.303 kb on - strand, within BACOVA_04397at 310.306 kb on - strand, within BACOVA_04397at 310.359 kb on - strand, within BACOVA_04397at 310.437 kb on - strandat 310.437 kb on - strandat 310.456 kb on - strandat 310.456 kb on - strandat 310.471 kb on - strandat 310.478 kb on - strandat 310.487 kb on + strandat 310.496 kb on - strandat 310.538 kb on + strandat 310.538 kb on + strandat 310.541 kb on - strandat 310.579 kb on + strand, within BACOVA_04398at 310.595 kb on - strand, within BACOVA_04398at 310.647 kb on - strandat 310.729 kb on + strandat 310.730 kb on - strandat 310.899 kb on + strand, within BACOVA_04399at 310.904 kb on + strand, within BACOVA_04399at 310.937 kb on + strand, within BACOVA_04399at 310.938 kb on - strand, within BACOVA_04399at 310.938 kb on - strand, within BACOVA_04399at 310.943 kb on + strand, within BACOVA_04399at 310.944 kb on - strand, within BACOVA_04399at 310.951 kb on - strand, within BACOVA_04399at 310.991 kb on - strand, within BACOVA_04399at 310.991 kb on - strand, within BACOVA_04399at 310.994 kb on - strand, within BACOVA_04399at 310.994 kb on - strand, within BACOVA_04399at 310.994 kb on - strand, within BACOVA_04399at 310.995 kb on + strand, within BACOVA_04399at 311.004 kb on - strand, within BACOVA_04399at 311.007 kb on + strand, within BACOVA_04399at 311.008 kb on - strand, within BACOVA_04399at 311.008 kb on - strand, within BACOVA_04399at 311.011 kb on + strand, within BACOVA_04399at 311.011 kb on + strand, within BACOVA_04399at 311.026 kb on - strand, within BACOVA_04399at 311.095 kb on + strand, within BACOVA_04399at 311.097 kb on + strand, within BACOVA_04399at 311.098 kb on - strand, within BACOVA_04399at 311.106 kb on + strand, within BACOVA_04399at 311.131 kb on + strand, within BACOVA_04399at 311.131 kb on + strand, within BACOVA_04399at 311.132 kb on - strand, within BACOVA_04399at 311.184 kb on - strand, within BACOVA_04399at 311.219 kb on - strand, within BACOVA_04399at 311.222 kb on + strand, within BACOVA_04399at 311.222 kb on + strand, within BACOVA_04399at 311.222 kb on + strand, within BACOVA_04399at 311.222 kb on + strand, within BACOVA_04399at 311.224 kb on + strand, within BACOVA_04399at 311.224 kb on + strand, within BACOVA_04399at 311.225 kb on - strand, within BACOVA_04399at 311.225 kb on - strand, within BACOVA_04399at 311.225 kb on - strand, within BACOVA_04399at 311.225 kb on - strand, within BACOVA_04399at 311.226 kb on + strand, within BACOVA_04399at 311.229 kb on - strand, within BACOVA_04399at 311.229 kb on - strand, within BACOVA_04399at 311.324 kb on - strand, within BACOVA_04399at 311.324 kb on - strand, within BACOVA_04399at 311.324 kb on - strand, within BACOVA_04399at 311.376 kb on + strand, within BACOVA_04399at 311.389 kb on - strand, within BACOVA_04399at 311.401 kb on + strand, within BACOVA_04399at 311.402 kb on - strand, within BACOVA_04399at 311.402 kb on - strand, within BACOVA_04399at 311.431 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C)
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309,209 + BACOVA_04395 0.85 +0.1
309,277 + BACOVA_04395 0.88 -0.0
309,314 + BACOVA_04395 0.90 -0.2
309,314 + BACOVA_04395 0.90 +1.8
309,315 - BACOVA_04395 0.90 -0.8
309,328 + -0.7
309,328 + +0.5
309,393 + +0.4
309,434 + +0.6
309,434 + +1.7
309,434 + -0.1
309,435 - +0.5
309,435 - +0.9
309,464 - -0.6
309,490 + +0.1
309,500 + +0.8
309,501 - -2.3
309,504 + -0.0
309,504 + +1.1
309,532 + -1.1
309,547 + -0.4
309,547 + -0.9
309,548 - +0.8
309,548 - -1.2
309,573 - -1.6
309,601 - +1.6
309,615 + -0.2
309,619 - -0.5
309,619 - +1.8
309,702 + BACOVA_04396 0.23 -0.6
309,992 + BACOVA_04396 0.74 -0.2
310,141 - +0.2
310,141 - -1.1
310,176 - BACOVA_04397 0.14 +0.2
310,176 - BACOVA_04397 0.14 +0.7
310,181 + BACOVA_04397 0.16 +1.1
310,213 - BACOVA_04397 0.26 -0.0
310,277 - BACOVA_04397 0.47 +0.5
310,303 - BACOVA_04397 0.56 -0.5
310,306 - BACOVA_04397 0.57 +0.2
310,359 - BACOVA_04397 0.74 +2.8
310,437 - +0.3
310,437 - -3.6
310,456 - -1.9
310,456 - -0.5
310,471 - +0.7
310,478 - +2.3
310,487 + +1.1
310,496 - -1.6
310,538 + -0.4
310,538 + -2.3
310,541 - -1.5
310,579 + BACOVA_04398 0.36 -0.3
310,595 - BACOVA_04398 0.58 -2.0
310,647 - -1.9
310,729 + +0.7
310,730 - +0.8
310,899 + BACOVA_04399 0.12 +1.1
310,904 + BACOVA_04399 0.12 +0.7
310,937 + BACOVA_04399 0.17 -0.4
310,938 - BACOVA_04399 0.18 +0.9
310,938 - BACOVA_04399 0.18 +0.8
310,943 + BACOVA_04399 0.18 -1.6
310,944 - BACOVA_04399 0.18 -2.3
310,951 - BACOVA_04399 0.20 -0.0
310,991 - BACOVA_04399 0.26 -0.7
310,991 - BACOVA_04399 0.26 +2.1
310,994 - BACOVA_04399 0.26 +1.3
310,994 - BACOVA_04399 0.26 +2.1
310,994 - BACOVA_04399 0.26 -0.6
310,995 + BACOVA_04399 0.26 -0.2
311,004 - BACOVA_04399 0.28 +0.6
311,007 + BACOVA_04399 0.28 -1.3
311,008 - BACOVA_04399 0.28 -0.3
311,008 - BACOVA_04399 0.28 -1.2
311,011 + BACOVA_04399 0.29 +0.2
311,011 + BACOVA_04399 0.29 -0.1
311,026 - BACOVA_04399 0.31 -0.1
311,095 + BACOVA_04399 0.41 -1.7
311,097 + BACOVA_04399 0.42 -0.1
311,098 - BACOVA_04399 0.42 -0.3
311,106 + BACOVA_04399 0.43 +0.6
311,131 + BACOVA_04399 0.47 -2.3
311,131 + BACOVA_04399 0.47 -1.8
311,132 - BACOVA_04399 0.47 +0.7
311,184 - BACOVA_04399 0.55 +2.3
311,219 - BACOVA_04399 0.60 -1.3
311,222 + BACOVA_04399 0.61 -0.6
311,222 + BACOVA_04399 0.61 +0.3
311,222 + BACOVA_04399 0.61 -1.3
311,222 + BACOVA_04399 0.61 -0.2
311,224 + BACOVA_04399 0.61 -2.1
311,224 + BACOVA_04399 0.61 -2.0
311,225 - BACOVA_04399 0.61 -1.3
311,225 - BACOVA_04399 0.61 +1.3
311,225 - BACOVA_04399 0.61 -1.7
311,225 - BACOVA_04399 0.61 -0.1
311,226 + BACOVA_04399 0.61 -1.9
311,229 - BACOVA_04399 0.62 -1.4
311,229 - BACOVA_04399 0.62 -0.4
311,324 - BACOVA_04399 0.76 +0.0
311,324 - BACOVA_04399 0.76 -0.2
311,324 - BACOVA_04399 0.76 -1.3
311,376 + BACOVA_04399 0.84 -1.1
311,389 - BACOVA_04399 0.86 -0.4
311,401 + BACOVA_04399 0.88 -0.0
311,402 - BACOVA_04399 0.88 -1.5
311,402 - BACOVA_04399 0.88 +0.9
311,431 - +0.9

Or see this region's nucleotide sequence