Experiment: amylopectin from maize 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04074 and BACOVA_04075 are separated by 57 nucleotides BACOVA_04075 and BACOVA_04076 are separated by 15 nucleotides BACOVA_04076 and BACOVA_04077 are separated by 121 nucleotides
BACOVA_04074: BACOVA_04074 - hypothetical protein, at 402,165 to 403,676
_04074
BACOVA_04075: BACOVA_04075 - hypothetical protein, at 403,734 to 405,446
_04075
BACOVA_04076: BACOVA_04076 - hypothetical protein, at 405,462 to 405,599
_04076
BACOVA_04077: BACOVA_04077 - hypothetical protein, at 405,721 to 406,719
_04077
Position (kb) 403
404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 402.791 kb on + strand, within BACOVA_04074 at 402.814 kb on - strand, within BACOVA_04074 at 402.822 kb on - strand, within BACOVA_04074 at 402.822 kb on - strand, within BACOVA_04074 at 402.822 kb on - strand, within BACOVA_04074 at 402.985 kb on - strand, within BACOVA_04074 at 402.993 kb on + strand, within BACOVA_04074 at 402.994 kb on - strand, within BACOVA_04074 at 403.023 kb on + strand, within BACOVA_04074 at 403.023 kb on + strand, within BACOVA_04074 at 403.090 kb on + strand, within BACOVA_04074 at 403.092 kb on - strand, within BACOVA_04074 at 403.112 kb on + strand, within BACOVA_04074 at 403.123 kb on + strand, within BACOVA_04074 at 403.123 kb on + strand, within BACOVA_04074 at 403.127 kb on + strand, within BACOVA_04074 at 403.128 kb on - strand, within BACOVA_04074 at 403.128 kb on - strand, within BACOVA_04074 at 403.257 kb on - strand, within BACOVA_04074 at 403.334 kb on + strand, within BACOVA_04074 at 403.338 kb on + strand, within BACOVA_04074 at 403.373 kb on - strand, within BACOVA_04074 at 403.415 kb on + strand, within BACOVA_04074 at 403.418 kb on - strand, within BACOVA_04074 at 403.529 kb on - strand at 403.537 kb on + strand at 403.538 kb on - strand at 403.643 kb on + strand at 403.644 kb on - strand at 403.644 kb on - strand at 403.675 kb on - strand at 403.708 kb on + strand at 403.730 kb on + strand at 403.746 kb on - strand at 403.849 kb on + strand at 403.854 kb on + strand at 403.854 kb on + strand at 403.855 kb on - strand at 403.875 kb on - strand at 403.921 kb on + strand, within BACOVA_04075 at 403.951 kb on - strand, within BACOVA_04075 at 403.958 kb on + strand, within BACOVA_04075 at 403.959 kb on - strand, within BACOVA_04075 at 404.004 kb on - strand, within BACOVA_04075 at 404.007 kb on + strand, within BACOVA_04075 at 404.008 kb on - strand, within BACOVA_04075 at 404.008 kb on - strand, within BACOVA_04075 at 404.017 kb on + strand, within BACOVA_04075 at 404.046 kb on - strand, within BACOVA_04075 at 404.046 kb on - strand, within BACOVA_04075 at 404.055 kb on - strand, within BACOVA_04075 at 404.055 kb on - strand, within BACOVA_04075 at 404.093 kb on + strand, within BACOVA_04075 at 404.097 kb on + strand, within BACOVA_04075 at 404.169 kb on + strand, within BACOVA_04075 at 404.169 kb on + strand, within BACOVA_04075 at 404.210 kb on + strand, within BACOVA_04075 at 404.347 kb on + strand, within BACOVA_04075 at 404.348 kb on - strand, within BACOVA_04075 at 404.378 kb on + strand, within BACOVA_04075 at 404.463 kb on - strand, within BACOVA_04075 at 404.463 kb on - strand, within BACOVA_04075 at 404.548 kb on + strand, within BACOVA_04075 at 404.553 kb on + strand, within BACOVA_04075 at 404.554 kb on - strand, within BACOVA_04075 at 404.554 kb on - strand, within BACOVA_04075 at 404.556 kb on + strand, within BACOVA_04075 at 404.598 kb on + strand, within BACOVA_04075 at 404.637 kb on + strand, within BACOVA_04075 at 404.684 kb on + strand, within BACOVA_04075 at 404.684 kb on + strand, within BACOVA_04075 at 404.693 kb on + strand, within BACOVA_04075 at 404.697 kb on - strand, within BACOVA_04075 at 404.729 kb on + strand, within BACOVA_04075 at 404.730 kb on - strand, within BACOVA_04075 at 404.772 kb on + strand, within BACOVA_04075 at 404.778 kb on + strand, within BACOVA_04075 at 404.779 kb on - strand, within BACOVA_04075 at 404.779 kb on - strand, within BACOVA_04075 at 404.779 kb on - strand, within BACOVA_04075 at 404.779 kb on - strand, within BACOVA_04075 at 404.779 kb on - strand, within BACOVA_04075 at 404.792 kb on + strand, within BACOVA_04075 at 404.793 kb on - strand, within BACOVA_04075 at 404.853 kb on + strand, within BACOVA_04075 at 404.918 kb on + strand, within BACOVA_04075 at 404.962 kb on - strand, within BACOVA_04075 at 404.964 kb on - strand, within BACOVA_04075 at 404.964 kb on - strand, within BACOVA_04075 at 405.023 kb on - strand, within BACOVA_04075 at 405.045 kb on + strand, within BACOVA_04075 at 405.048 kb on - strand, within BACOVA_04075 at 405.068 kb on + strand, within BACOVA_04075 at 405.069 kb on - strand, within BACOVA_04075 at 405.171 kb on + strand, within BACOVA_04075 at 405.196 kb on - strand, within BACOVA_04075 at 405.199 kb on - strand, within BACOVA_04075 at 405.202 kb on - strand, within BACOVA_04075 at 405.202 kb on - strand, within BACOVA_04075 at 405.204 kb on + strand, within BACOVA_04075 at 405.205 kb on - strand, within BACOVA_04075 at 405.247 kb on - strand, within BACOVA_04075 at 405.256 kb on - strand, within BACOVA_04075 at 405.263 kb on - strand, within BACOVA_04075 at 405.272 kb on + strand, within BACOVA_04075 at 405.273 kb on - strand, within BACOVA_04075 at 405.276 kb on + strand at 405.281 kb on + strand at 405.282 kb on - strand at 405.287 kb on + strand at 405.288 kb on - strand at 405.288 kb on - strand at 405.418 kb on + strand at 405.421 kb on - strand at 405.445 kb on - strand at 405.498 kb on + strand, within BACOVA_04076 at 405.678 kb on - strand at 405.720 kb on + strand at 405.721 kb on - strand at 405.751 kb on - strand at 405.767 kb on + strand at 405.767 kb on + strand at 405.767 kb on + strand at 405.767 kb on + strand at 405.772 kb on - strand at 405.790 kb on - strand at 405.790 kb on - strand at 405.791 kb on + strand at 405.833 kb on + strand, within BACOVA_04077 at 405.893 kb on + strand, within BACOVA_04077 at 405.894 kb on - strand, within BACOVA_04077 at 406.006 kb on - strand, within BACOVA_04077 at 406.010 kb on + strand, within BACOVA_04077 at 406.107 kb on - strand, within BACOVA_04077 at 406.134 kb on + strand, within BACOVA_04077 at 406.157 kb on - strand, within BACOVA_04077 at 406.157 kb on - strand, within BACOVA_04077 at 406.298 kb on - strand, within BACOVA_04077 at 406.299 kb on + strand, within BACOVA_04077 at 406.376 kb on - strand, within BACOVA_04077 at 406.376 kb on - strand, within BACOVA_04077 at 406.387 kb on + strand, within BACOVA_04077 at 406.389 kb on + strand, within BACOVA_04077 at 406.389 kb on + strand, within BACOVA_04077 at 406.389 kb on + strand, within BACOVA_04077 at 406.389 kb on + strand, within BACOVA_04077 at 406.390 kb on - strand, within BACOVA_04077 at 406.390 kb on - strand, within BACOVA_04077 at 406.420 kb on - strand, within BACOVA_04077
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C) remove 402,791 + BACOVA_04074 0.41 -1.2 402,814 - BACOVA_04074 0.43 +0.8 402,822 - BACOVA_04074 0.43 -0.4 402,822 - BACOVA_04074 0.43 -0.6 402,822 - BACOVA_04074 0.43 +0.9 402,985 - BACOVA_04074 0.54 -1.6 402,993 + BACOVA_04074 0.55 -2.0 402,994 - BACOVA_04074 0.55 -0.1 403,023 + BACOVA_04074 0.57 +1.3 403,023 + BACOVA_04074 0.57 -0.4 403,090 + BACOVA_04074 0.61 -1.0 403,092 - BACOVA_04074 0.61 -0.8 403,112 + BACOVA_04074 0.63 -0.0 403,123 + BACOVA_04074 0.63 -1.2 403,123 + BACOVA_04074 0.63 +0.7 403,127 + BACOVA_04074 0.64 +1.2 403,128 - BACOVA_04074 0.64 -2.5 403,128 - BACOVA_04074 0.64 -1.8 403,257 - BACOVA_04074 0.72 -1.5 403,334 + BACOVA_04074 0.77 -1.3 403,338 + BACOVA_04074 0.78 +0.6 403,373 - BACOVA_04074 0.80 +1.0 403,415 + BACOVA_04074 0.83 -1.4 403,418 - BACOVA_04074 0.83 +1.5 403,529 - -0.5 403,537 + -0.4 403,538 - +0.7 403,643 + -2.2 403,644 - +2.0 403,644 - -1.0 403,675 - -0.8 403,708 + -1.2 403,730 + -2.3 403,746 - +0.6 403,849 + +1.8 403,854 + -0.0 403,854 + +1.0 403,855 - -1.5 403,875 - -0.4 403,921 + BACOVA_04075 0.11 +0.1 403,951 - BACOVA_04075 0.13 -1.3 403,958 + BACOVA_04075 0.13 +0.5 403,959 - BACOVA_04075 0.13 -1.7 404,004 - BACOVA_04075 0.16 +0.3 404,007 + BACOVA_04075 0.16 -1.8 404,008 - BACOVA_04075 0.16 -0.2 404,008 - BACOVA_04075 0.16 +1.8 404,017 + BACOVA_04075 0.17 +0.3 404,046 - BACOVA_04075 0.18 -0.4 404,046 - BACOVA_04075 0.18 -1.4 404,055 - BACOVA_04075 0.19 -1.2 404,055 - BACOVA_04075 0.19 -0.6 404,093 + BACOVA_04075 0.21 -0.2 404,097 + BACOVA_04075 0.21 -0.6 404,169 + BACOVA_04075 0.25 -0.9 404,169 + BACOVA_04075 0.25 -0.4 404,210 + BACOVA_04075 0.28 -0.2 404,347 + BACOVA_04075 0.36 -0.1 404,348 - BACOVA_04075 0.36 +1.0 404,378 + BACOVA_04075 0.38 +1.4 404,463 - BACOVA_04075 0.43 -0.9 404,463 - BACOVA_04075 0.43 +0.1 404,548 + BACOVA_04075 0.48 -0.5 404,553 + BACOVA_04075 0.48 -0.8 404,554 - BACOVA_04075 0.48 -1.5 404,554 - BACOVA_04075 0.48 +1.9 404,556 + BACOVA_04075 0.48 +2.2 404,598 + BACOVA_04075 0.50 -0.1 404,637 + BACOVA_04075 0.53 +0.1 404,684 + BACOVA_04075 0.55 -0.2 404,684 + BACOVA_04075 0.55 +1.8 404,693 + BACOVA_04075 0.56 -2.3 404,697 - BACOVA_04075 0.56 -2.1 404,729 + BACOVA_04075 0.58 +2.9 404,730 - BACOVA_04075 0.58 +2.1 404,772 + BACOVA_04075 0.61 -1.0 404,778 + BACOVA_04075 0.61 +1.3 404,779 - BACOVA_04075 0.61 -0.2 404,779 - BACOVA_04075 0.61 -0.4 404,779 - BACOVA_04075 0.61 -0.6 404,779 - BACOVA_04075 0.61 +2.3 404,779 - BACOVA_04075 0.61 -0.3 404,792 + BACOVA_04075 0.62 +1.2 404,793 - BACOVA_04075 0.62 +0.5 404,853 + BACOVA_04075 0.65 -0.3 404,918 + BACOVA_04075 0.69 -0.4 404,962 - BACOVA_04075 0.72 -0.7 404,964 - BACOVA_04075 0.72 -0.4 404,964 - BACOVA_04075 0.72 +0.4 405,023 - BACOVA_04075 0.75 -1.8 405,045 + BACOVA_04075 0.77 +0.2 405,048 - BACOVA_04075 0.77 -3.1 405,068 + BACOVA_04075 0.78 -0.6 405,069 - BACOVA_04075 0.78 +0.1 405,171 + BACOVA_04075 0.84 +0.1 405,196 - BACOVA_04075 0.85 +0.1 405,199 - BACOVA_04075 0.86 +0.3 405,202 - BACOVA_04075 0.86 -0.7 405,202 - BACOVA_04075 0.86 -0.7 405,204 + BACOVA_04075 0.86 -1.2 405,205 - BACOVA_04075 0.86 +1.5 405,247 - BACOVA_04075 0.88 +1.6 405,256 - BACOVA_04075 0.89 -1.3 405,263 - BACOVA_04075 0.89 +2.3 405,272 + BACOVA_04075 0.90 -0.4 405,273 - BACOVA_04075 0.90 +0.4 405,276 + +1.0 405,281 + -0.0 405,282 - -0.6 405,287 + -0.6 405,288 - -1.3 405,288 - -0.6 405,418 + +0.7 405,421 - -0.5 405,445 - +1.1 405,498 + BACOVA_04076 0.26 -2.2 405,678 - +1.4 405,720 + -0.6 405,721 - +1.9 405,751 - -0.5 405,767 + -0.4 405,767 + -0.1 405,767 + +0.1 405,767 + -0.6 405,772 - -1.2 405,790 - +0.3 405,790 - -1.0 405,791 + +1.1 405,833 + BACOVA_04077 0.11 -0.1 405,893 + BACOVA_04077 0.17 -0.0 405,894 - BACOVA_04077 0.17 -1.2 406,006 - BACOVA_04077 0.29 +2.2 406,010 + BACOVA_04077 0.29 +2.2 406,107 - BACOVA_04077 0.39 -1.3 406,134 + BACOVA_04077 0.41 +1.4 406,157 - BACOVA_04077 0.44 -0.9 406,157 - BACOVA_04077 0.44 -0.5 406,298 - BACOVA_04077 0.58 -1.0 406,299 + BACOVA_04077 0.58 +1.6 406,376 - BACOVA_04077 0.66 -0.8 406,376 - BACOVA_04077 0.66 -1.7 406,387 + BACOVA_04077 0.67 +0.8 406,389 + BACOVA_04077 0.67 -2.0 406,389 + BACOVA_04077 0.67 +2.8 406,389 + BACOVA_04077 0.67 +0.1 406,389 + BACOVA_04077 0.67 -0.4 406,390 - BACOVA_04077 0.67 -1.3 406,390 - BACOVA_04077 0.67 -0.6 406,420 - BACOVA_04077 0.70 +0.8
Or see this region's nucleotide sequence