Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03865

Experiment: amylopectin from maize 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03863 and BACOVA_03864 are separated by 172 nucleotidesBACOVA_03864 and BACOVA_03865 are separated by 34 nucleotidesBACOVA_03865 and BACOVA_03866 are separated by 125 nucleotides BACOVA_03863: BACOVA_03863 - transcriptional regulator, AraC family, at 217,194 to 218,891 _03863 BACOVA_03864: BACOVA_03864 - hypothetical protein, at 219,064 to 219,723 _03864 BACOVA_03865: BACOVA_03865 - hypothetical protein, at 219,758 to 220,540 _03865 BACOVA_03866: BACOVA_03866 - IS66 family element, transposase, at 220,666 to 222,444 _03866 Position (kb) 219 220 221Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 218.776 kb on - strandat 218.838 kb on + strandat 218.839 kb on - strandat 218.848 kb on - strandat 218.889 kb on + strandat 218.948 kb on - strandat 218.948 kb on - strandat 219.011 kb on - strandat 219.015 kb on + strandat 219.019 kb on + strandat 219.023 kb on + strandat 219.043 kb on - strandat 219.063 kb on + strandat 219.072 kb on + strandat 219.120 kb on - strandat 219.122 kb on + strandat 219.122 kb on + strandat 219.123 kb on - strandat 219.123 kb on - strandat 219.131 kb on + strand, within BACOVA_03864at 219.159 kb on + strand, within BACOVA_03864at 219.159 kb on + strand, within BACOVA_03864at 219.181 kb on - strand, within BACOVA_03864at 219.189 kb on - strand, within BACOVA_03864at 219.189 kb on - strand, within BACOVA_03864at 219.214 kb on - strand, within BACOVA_03864at 219.217 kb on + strand, within BACOVA_03864at 219.228 kb on + strand, within BACOVA_03864at 219.229 kb on - strand, within BACOVA_03864at 219.307 kb on - strand, within BACOVA_03864at 219.334 kb on - strand, within BACOVA_03864at 219.390 kb on - strand, within BACOVA_03864at 219.399 kb on + strand, within BACOVA_03864at 219.421 kb on - strand, within BACOVA_03864at 219.427 kb on + strand, within BACOVA_03864at 219.439 kb on + strand, within BACOVA_03864at 219.453 kb on + strand, within BACOVA_03864at 219.509 kb on + strand, within BACOVA_03864at 219.514 kb on + strand, within BACOVA_03864at 219.514 kb on + strand, within BACOVA_03864at 219.533 kb on + strand, within BACOVA_03864at 219.569 kb on + strand, within BACOVA_03864at 219.569 kb on + strand, within BACOVA_03864at 219.579 kb on + strand, within BACOVA_03864at 219.580 kb on - strand, within BACOVA_03864at 219.580 kb on - strand, within BACOVA_03864at 219.581 kb on + strand, within BACOVA_03864at 219.581 kb on + strand, within BACOVA_03864at 219.582 kb on - strand, within BACOVA_03864at 219.604 kb on + strand, within BACOVA_03864at 219.606 kb on + strand, within BACOVA_03864at 219.607 kb on - strand, within BACOVA_03864at 219.607 kb on - strand, within BACOVA_03864at 219.607 kb on - strand, within BACOVA_03864at 219.610 kb on + strand, within BACOVA_03864at 219.611 kb on - strand, within BACOVA_03864at 219.611 kb on - strand, within BACOVA_03864at 219.612 kb on + strand, within BACOVA_03864at 219.612 kb on + strand, within BACOVA_03864at 219.722 kb on - strandat 219.748 kb on + strandat 219.749 kb on - strandat 219.757 kb on + strandat 219.770 kb on - strandat 219.817 kb on - strandat 219.819 kb on - strandat 219.832 kb on - strandat 219.853 kb on + strand, within BACOVA_03865at 219.854 kb on - strand, within BACOVA_03865at 219.866 kb on - strand, within BACOVA_03865at 219.888 kb on + strand, within BACOVA_03865at 219.902 kb on + strand, within BACOVA_03865at 219.954 kb on + strand, within BACOVA_03865at 219.995 kb on - strand, within BACOVA_03865at 220.012 kb on + strand, within BACOVA_03865at 220.012 kb on + strand, within BACOVA_03865at 220.012 kb on + strand, within BACOVA_03865at 220.013 kb on - strand, within BACOVA_03865at 220.040 kb on + strand, within BACOVA_03865at 220.040 kb on + strand, within BACOVA_03865at 220.041 kb on - strand, within BACOVA_03865at 220.044 kb on - strand, within BACOVA_03865at 220.113 kb on - strand, within BACOVA_03865at 220.141 kb on + strand, within BACOVA_03865at 220.141 kb on + strand, within BACOVA_03865at 220.141 kb on + strand, within BACOVA_03865at 220.142 kb on - strand, within BACOVA_03865at 220.152 kb on + strand, within BACOVA_03865at 220.162 kb on - strand, within BACOVA_03865at 220.210 kb on - strand, within BACOVA_03865at 220.229 kb on + strand, within BACOVA_03865at 220.230 kb on - strand, within BACOVA_03865at 220.286 kb on + strand, within BACOVA_03865at 220.290 kb on + strand, within BACOVA_03865at 220.290 kb on + strand, within BACOVA_03865at 220.323 kb on - strand, within BACOVA_03865at 220.349 kb on + strand, within BACOVA_03865at 220.349 kb on + strand, within BACOVA_03865at 220.349 kb on + strand, within BACOVA_03865at 220.350 kb on - strand, within BACOVA_03865at 220.350 kb on - strand, within BACOVA_03865at 220.352 kb on + strand, within BACOVA_03865at 220.380 kb on + strand, within BACOVA_03865at 220.381 kb on - strand, within BACOVA_03865at 220.381 kb on - strand, within BACOVA_03865at 220.381 kb on - strand, within BACOVA_03865at 220.381 kb on - strand, within BACOVA_03865at 220.421 kb on + strand, within BACOVA_03865at 220.422 kb on - strand, within BACOVA_03865at 220.433 kb on - strand, within BACOVA_03865at 220.455 kb on - strand, within BACOVA_03865at 220.455 kb on - strand, within BACOVA_03865at 220.538 kb on + strandat 220.542 kb on + strandat 220.543 kb on - strandat 220.587 kb on - strandat 220.587 kb on - strandat 220.590 kb on - strandat 220.590 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C)
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218,776 - +1.4
218,838 + +0.7
218,839 - -1.1
218,848 - -1.0
218,889 + -0.1
218,948 - +0.4
218,948 - +0.1
219,011 - -1.9
219,015 + -1.3
219,019 + -0.6
219,023 + -2.7
219,043 - -2.2
219,063 + -0.2
219,072 + +1.0
219,120 - +0.7
219,122 + -1.7
219,122 + +0.8
219,123 - +1.2
219,123 - +3.0
219,131 + BACOVA_03864 0.10 -0.6
219,159 + BACOVA_03864 0.14 -1.9
219,159 + BACOVA_03864 0.14 -1.6
219,181 - BACOVA_03864 0.18 -1.0
219,189 - BACOVA_03864 0.19 -1.1
219,189 - BACOVA_03864 0.19 +0.3
219,214 - BACOVA_03864 0.23 +2.2
219,217 + BACOVA_03864 0.23 +0.5
219,228 + BACOVA_03864 0.25 +2.3
219,229 - BACOVA_03864 0.25 +0.9
219,307 - BACOVA_03864 0.37 -2.1
219,334 - BACOVA_03864 0.41 +0.4
219,390 - BACOVA_03864 0.49 +0.9
219,399 + BACOVA_03864 0.51 -1.1
219,421 - BACOVA_03864 0.54 -0.8
219,427 + BACOVA_03864 0.55 -3.4
219,439 + BACOVA_03864 0.57 +1.3
219,453 + BACOVA_03864 0.59 -0.5
219,509 + BACOVA_03864 0.67 +1.2
219,514 + BACOVA_03864 0.68 +2.0
219,514 + BACOVA_03864 0.68 -1.3
219,533 + BACOVA_03864 0.71 +0.3
219,569 + BACOVA_03864 0.77 -0.2
219,569 + BACOVA_03864 0.77 +0.7
219,579 + BACOVA_03864 0.78 +1.9
219,580 - BACOVA_03864 0.78 +2.9
219,580 - BACOVA_03864 0.78 -0.9
219,581 + BACOVA_03864 0.78 +0.2
219,581 + BACOVA_03864 0.78 -1.0
219,582 - BACOVA_03864 0.78 +0.9
219,604 + BACOVA_03864 0.82 +0.5
219,606 + BACOVA_03864 0.82 +0.1
219,607 - BACOVA_03864 0.82 +0.2
219,607 - BACOVA_03864 0.82 -2.0
219,607 - BACOVA_03864 0.82 -1.4
219,610 + BACOVA_03864 0.83 -0.8
219,611 - BACOVA_03864 0.83 +0.3
219,611 - BACOVA_03864 0.83 -0.2
219,612 + BACOVA_03864 0.83 +1.3
219,612 + BACOVA_03864 0.83 -2.4
219,722 - +3.0
219,748 + -0.6
219,749 - +0.7
219,757 + -0.6
219,770 - -1.5
219,817 - +1.6
219,819 - -3.5
219,832 - +0.9
219,853 + BACOVA_03865 0.12 +0.3
219,854 - BACOVA_03865 0.12 -0.2
219,866 - BACOVA_03865 0.14 -1.5
219,888 + BACOVA_03865 0.17 -0.4
219,902 + BACOVA_03865 0.18 +1.1
219,954 + BACOVA_03865 0.25 -0.6
219,995 - BACOVA_03865 0.30 +0.1
220,012 + BACOVA_03865 0.32 -0.6
220,012 + BACOVA_03865 0.32 +0.7
220,012 + BACOVA_03865 0.32 -2.4
220,013 - BACOVA_03865 0.33 -0.4
220,040 + BACOVA_03865 0.36 -0.4
220,040 + BACOVA_03865 0.36 -1.3
220,041 - BACOVA_03865 0.36 -0.1
220,044 - BACOVA_03865 0.37 +2.0
220,113 - BACOVA_03865 0.45 -1.4
220,141 + BACOVA_03865 0.49 -0.8
220,141 + BACOVA_03865 0.49 -0.8
220,141 + BACOVA_03865 0.49 -1.1
220,142 - BACOVA_03865 0.49 +2.7
220,152 + BACOVA_03865 0.50 +1.3
220,162 - BACOVA_03865 0.52 -0.5
220,210 - BACOVA_03865 0.58 +0.1
220,229 + BACOVA_03865 0.60 -0.5
220,230 - BACOVA_03865 0.60 +0.4
220,286 + BACOVA_03865 0.67 -2.7
220,290 + BACOVA_03865 0.68 -0.3
220,290 + BACOVA_03865 0.68 +2.3
220,323 - BACOVA_03865 0.72 -0.4
220,349 + BACOVA_03865 0.75 +0.7
220,349 + BACOVA_03865 0.75 +0.1
220,349 + BACOVA_03865 0.75 -3.8
220,350 - BACOVA_03865 0.76 +1.7
220,350 - BACOVA_03865 0.76 -1.2
220,352 + BACOVA_03865 0.76 +3.1
220,380 + BACOVA_03865 0.79 +3.9
220,381 - BACOVA_03865 0.80 +1.3
220,381 - BACOVA_03865 0.80 +0.2
220,381 - BACOVA_03865 0.80 -1.5
220,381 - BACOVA_03865 0.80 -0.7
220,421 + BACOVA_03865 0.85 +1.6
220,422 - BACOVA_03865 0.85 -1.2
220,433 - BACOVA_03865 0.86 +2.8
220,455 - BACOVA_03865 0.89 +0.3
220,455 - BACOVA_03865 0.89 +0.4
220,538 + +1.9
220,542 + -0.5
220,543 - -0.7
220,587 - +2.5
220,587 - -2.7
220,590 - +2.0
220,590 - -0.7

Or see this region's nucleotide sequence