Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03499

Experiment: amylopectin from maize 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03497 and BACOVA_03498 overlap by 4 nucleotidesBACOVA_03498 and BACOVA_03499 are separated by 196 nucleotidesBACOVA_03499 and BACOVA_03500 are separated by 39 nucleotides BACOVA_03497: BACOVA_03497 - putative TIGR00659 family protein, at 255,148 to 255,843 _03497 BACOVA_03498: BACOVA_03498 - LrgA family protein, at 255,840 to 256,283 _03498 BACOVA_03499: BACOVA_03499 - phosphate acetyltransferase, at 256,480 to 257,499 _03499 BACOVA_03500: BACOVA_03500 - acetate kinase, at 257,539 to 258,738 _03500 Position (kb) 256 257 258Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 255.481 kb on + strand, within BACOVA_03497at 255.482 kb on - strand, within BACOVA_03497at 255.567 kb on + strand, within BACOVA_03497at 255.567 kb on + strand, within BACOVA_03497at 255.568 kb on - strand, within BACOVA_03497at 255.605 kb on + strand, within BACOVA_03497at 255.605 kb on + strand, within BACOVA_03497at 255.606 kb on - strand, within BACOVA_03497at 255.607 kb on + strand, within BACOVA_03497at 255.607 kb on + strand, within BACOVA_03497at 255.608 kb on - strand, within BACOVA_03497at 255.608 kb on - strand, within BACOVA_03497at 255.613 kb on + strand, within BACOVA_03497at 255.669 kb on + strand, within BACOVA_03497at 255.670 kb on - strand, within BACOVA_03497at 255.672 kb on + strand, within BACOVA_03497at 255.672 kb on + strand, within BACOVA_03497at 255.673 kb on - strand, within BACOVA_03497at 255.674 kb on + strand, within BACOVA_03497at 255.715 kb on + strand, within BACOVA_03497at 255.716 kb on - strand, within BACOVA_03497at 255.716 kb on - strand, within BACOVA_03497at 255.736 kb on + strand, within BACOVA_03497at 255.736 kb on + strand, within BACOVA_03497at 255.736 kb on + strand, within BACOVA_03497at 255.738 kb on + strand, within BACOVA_03497at 255.739 kb on - strand, within BACOVA_03497at 255.745 kb on + strand, within BACOVA_03497at 255.745 kb on + strand, within BACOVA_03497at 255.745 kb on + strand, within BACOVA_03497at 255.745 kb on + strand, within BACOVA_03497at 255.746 kb on - strand, within BACOVA_03497at 255.746 kb on - strand, within BACOVA_03497at 255.804 kb on + strandat 255.833 kb on - strandat 255.875 kb on + strandat 255.876 kb on - strandat 255.883 kb on - strandat 255.973 kb on - strand, within BACOVA_03498at 255.973 kb on - strand, within BACOVA_03498at 255.993 kb on + strand, within BACOVA_03498at 255.993 kb on + strand, within BACOVA_03498at 255.994 kb on - strand, within BACOVA_03498at 256.016 kb on + strand, within BACOVA_03498at 256.016 kb on + strand, within BACOVA_03498at 256.016 kb on + strand, within BACOVA_03498at 256.016 kb on + strand, within BACOVA_03498at 256.017 kb on - strand, within BACOVA_03498at 256.017 kb on - strand, within BACOVA_03498at 256.017 kb on - strand, within BACOVA_03498at 256.017 kb on - strand, within BACOVA_03498at 256.017 kb on - strand, within BACOVA_03498at 256.049 kb on + strand, within BACOVA_03498at 256.050 kb on - strand, within BACOVA_03498at 256.067 kb on + strand, within BACOVA_03498at 256.067 kb on + strand, within BACOVA_03498at 256.135 kb on - strand, within BACOVA_03498at 256.143 kb on + strand, within BACOVA_03498at 256.149 kb on - strand, within BACOVA_03498at 256.159 kb on - strand, within BACOVA_03498at 256.159 kb on - strand, within BACOVA_03498at 256.215 kb on - strand, within BACOVA_03498at 256.225 kb on + strand, within BACOVA_03498at 256.226 kb on - strand, within BACOVA_03498at 256.231 kb on - strand, within BACOVA_03498at 256.233 kb on + strand, within BACOVA_03498at 256.278 kb on + strandat 256.279 kb on - strandat 256.283 kb on + strandat 256.284 kb on - strandat 256.287 kb on + strandat 256.460 kb on + strandat 256.460 kb on + strandat 257.504 kb on + strandat 257.504 kb on + strandat 257.504 kb on + strandat 257.510 kb on + strandat 257.515 kb on + strandat 257.524 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C)
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255,481 + BACOVA_03497 0.48 +1.2
255,482 - BACOVA_03497 0.48 +0.6
255,567 + BACOVA_03497 0.60 -0.6
255,567 + BACOVA_03497 0.60 +1.0
255,568 - BACOVA_03497 0.60 -1.9
255,605 + BACOVA_03497 0.66 -0.6
255,605 + BACOVA_03497 0.66 +2.3
255,606 - BACOVA_03497 0.66 +0.6
255,607 + BACOVA_03497 0.66 +1.7
255,607 + BACOVA_03497 0.66 -0.6
255,608 - BACOVA_03497 0.66 -1.2
255,608 - BACOVA_03497 0.66 +2.4
255,613 + BACOVA_03497 0.67 -0.4
255,669 + BACOVA_03497 0.75 -0.5
255,670 - BACOVA_03497 0.75 +0.1
255,672 + BACOVA_03497 0.75 -0.2
255,672 + BACOVA_03497 0.75 -0.8
255,673 - BACOVA_03497 0.75 -1.4
255,674 + BACOVA_03497 0.76 -1.2
255,715 + BACOVA_03497 0.81 +0.7
255,716 - BACOVA_03497 0.82 -0.7
255,716 - BACOVA_03497 0.82 -0.3
255,736 + BACOVA_03497 0.84 -1.5
255,736 + BACOVA_03497 0.84 +1.3
255,736 + BACOVA_03497 0.84 +2.4
255,738 + BACOVA_03497 0.85 +1.6
255,739 - BACOVA_03497 0.85 -1.1
255,745 + BACOVA_03497 0.86 +0.0
255,745 + BACOVA_03497 0.86 +2.6
255,745 + BACOVA_03497 0.86 -0.6
255,745 + BACOVA_03497 0.86 +0.1
255,746 - BACOVA_03497 0.86 -1.2
255,746 - BACOVA_03497 0.86 +0.3
255,804 + -1.5
255,833 - -0.6
255,875 + -1.9
255,876 - +0.0
255,883 - +2.1
255,973 - BACOVA_03498 0.30 -0.9
255,973 - BACOVA_03498 0.30 -0.9
255,993 + BACOVA_03498 0.34 -0.6
255,993 + BACOVA_03498 0.34 +0.1
255,994 - BACOVA_03498 0.35 +0.9
256,016 + BACOVA_03498 0.40 +0.1
256,016 + BACOVA_03498 0.40 -0.8
256,016 + BACOVA_03498 0.40 -0.3
256,016 + BACOVA_03498 0.40 -1.2
256,017 - BACOVA_03498 0.40 -0.3
256,017 - BACOVA_03498 0.40 +0.7
256,017 - BACOVA_03498 0.40 -0.9
256,017 - BACOVA_03498 0.40 +0.0
256,017 - BACOVA_03498 0.40 +0.6
256,049 + BACOVA_03498 0.47 +0.5
256,050 - BACOVA_03498 0.47 +1.4
256,067 + BACOVA_03498 0.51 +1.4
256,067 + BACOVA_03498 0.51 +3.0
256,135 - BACOVA_03498 0.66 +1.7
256,143 + BACOVA_03498 0.68 +1.5
256,149 - BACOVA_03498 0.70 -0.5
256,159 - BACOVA_03498 0.72 -0.3
256,159 - BACOVA_03498 0.72 +0.6
256,215 - BACOVA_03498 0.84 -1.0
256,225 + BACOVA_03498 0.87 +0.4
256,226 - BACOVA_03498 0.87 +0.6
256,231 - BACOVA_03498 0.88 -1.5
256,233 + BACOVA_03498 0.89 +1.2
256,278 + +0.1
256,279 - -0.1
256,283 + -0.2
256,284 - -0.1
256,287 + +1.6
256,460 + +2.6
256,460 + -2.2
257,504 + +0.3
257,504 + +0.3
257,504 + -0.3
257,510 + +1.3
257,515 + -3.0
257,524 + +0.7

Or see this region's nucleotide sequence