Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03456

Experiment: amylopectin from maize 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03455 and BACOVA_03456 are separated by 16 nucleotidesBACOVA_03456 and BACOVA_03457 are separated by 12 nucleotides BACOVA_03455: BACOVA_03455 - hypothetical protein, at 197,230 to 198,513 _03455 BACOVA_03456: BACOVA_03456 - SpoIID/LytB domain protein, at 198,530 to 199,900 _03456 BACOVA_03457: BACOVA_03457 - glycosyltransferase, group 2 family protein, at 199,913 to 202,369 _03457 Position (kb) 198 199 200Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 197.557 kb on + strand, within BACOVA_03455at 197.557 kb on + strand, within BACOVA_03455at 197.557 kb on + strand, within BACOVA_03455at 197.558 kb on - strand, within BACOVA_03455at 197.558 kb on - strand, within BACOVA_03455at 197.561 kb on + strand, within BACOVA_03455at 197.562 kb on - strand, within BACOVA_03455at 197.562 kb on - strand, within BACOVA_03455at 197.562 kb on - strand, within BACOVA_03455at 197.562 kb on - strand, within BACOVA_03455at 197.563 kb on + strand, within BACOVA_03455at 197.563 kb on + strand, within BACOVA_03455at 197.564 kb on - strand, within BACOVA_03455at 197.564 kb on - strand, within BACOVA_03455at 197.599 kb on + strand, within BACOVA_03455at 197.600 kb on - strand, within BACOVA_03455at 197.663 kb on - strand, within BACOVA_03455at 197.669 kb on - strand, within BACOVA_03455at 197.678 kb on - strand, within BACOVA_03455at 197.678 kb on - strand, within BACOVA_03455at 197.679 kb on + strand, within BACOVA_03455at 197.679 kb on + strand, within BACOVA_03455at 197.680 kb on - strand, within BACOVA_03455at 197.680 kb on - strand, within BACOVA_03455at 197.720 kb on - strand, within BACOVA_03455at 197.731 kb on - strand, within BACOVA_03455at 197.761 kb on + strand, within BACOVA_03455at 197.761 kb on + strand, within BACOVA_03455at 197.761 kb on + strand, within BACOVA_03455at 197.902 kb on - strand, within BACOVA_03455at 197.940 kb on - strand, within BACOVA_03455at 197.944 kb on - strand, within BACOVA_03455at 197.947 kb on - strand, within BACOVA_03455at 197.975 kb on + strand, within BACOVA_03455at 197.976 kb on - strand, within BACOVA_03455at 197.976 kb on - strand, within BACOVA_03455at 197.982 kb on + strand, within BACOVA_03455at 197.983 kb on - strand, within BACOVA_03455at 198.077 kb on + strand, within BACOVA_03455at 198.084 kb on + strand, within BACOVA_03455at 198.085 kb on - strand, within BACOVA_03455at 198.085 kb on - strand, within BACOVA_03455at 198.118 kb on - strand, within BACOVA_03455at 198.138 kb on - strand, within BACOVA_03455at 198.165 kb on + strand, within BACOVA_03455at 198.212 kb on - strand, within BACOVA_03455at 198.215 kb on + strand, within BACOVA_03455at 198.215 kb on + strand, within BACOVA_03455at 198.215 kb on + strand, within BACOVA_03455at 198.216 kb on - strand, within BACOVA_03455at 198.328 kb on + strand, within BACOVA_03455at 198.354 kb on - strand, within BACOVA_03455at 198.368 kb on + strand, within BACOVA_03455at 198.369 kb on - strand, within BACOVA_03455at 198.369 kb on - strand, within BACOVA_03455at 198.370 kb on + strand, within BACOVA_03455at 198.376 kb on + strand, within BACOVA_03455at 198.407 kb on + strandat 198.414 kb on + strandat 198.415 kb on - strandat 198.437 kb on - strandat 198.461 kb on + strandat 198.461 kb on + strandat 198.461 kb on + strandat 198.496 kb on + strandat 198.498 kb on + strandat 198.537 kb on + strandat 198.568 kb on - strandat 198.579 kb on - strandat 198.579 kb on - strandat 198.579 kb on - strandat 198.579 kb on - strandat 198.592 kb on + strandat 198.592 kb on + strandat 198.593 kb on - strandat 198.593 kb on - strandat 198.595 kb on - strandat 198.638 kb on + strandat 198.639 kb on - strandat 198.697 kb on + strand, within BACOVA_03456at 198.728 kb on + strand, within BACOVA_03456at 198.729 kb on - strand, within BACOVA_03456at 198.729 kb on - strand, within BACOVA_03456at 198.742 kb on + strand, within BACOVA_03456at 198.743 kb on - strand, within BACOVA_03456at 198.758 kb on - strand, within BACOVA_03456at 198.762 kb on - strand, within BACOVA_03456at 198.762 kb on - strand, within BACOVA_03456at 198.796 kb on + strand, within BACOVA_03456at 198.796 kb on + strand, within BACOVA_03456at 198.796 kb on + strand, within BACOVA_03456at 198.797 kb on - strand, within BACOVA_03456at 198.815 kb on + strand, within BACOVA_03456at 198.867 kb on - strand, within BACOVA_03456at 198.954 kb on + strand, within BACOVA_03456at 198.998 kb on + strand, within BACOVA_03456at 199.043 kb on - strand, within BACOVA_03456at 199.043 kb on - strand, within BACOVA_03456at 199.086 kb on - strand, within BACOVA_03456at 199.102 kb on + strand, within BACOVA_03456at 199.186 kb on + strand, within BACOVA_03456at 199.226 kb on + strand, within BACOVA_03456at 199.293 kb on + strand, within BACOVA_03456at 199.319 kb on + strand, within BACOVA_03456at 199.320 kb on - strand, within BACOVA_03456at 199.350 kb on + strand, within BACOVA_03456at 199.412 kb on + strand, within BACOVA_03456at 199.415 kb on - strand, within BACOVA_03456at 199.471 kb on + strand, within BACOVA_03456at 199.495 kb on + strand, within BACOVA_03456at 199.496 kb on - strand, within BACOVA_03456at 199.511 kb on + strand, within BACOVA_03456at 199.511 kb on + strand, within BACOVA_03456at 199.512 kb on - strand, within BACOVA_03456at 199.521 kb on - strand, within BACOVA_03456at 199.598 kb on - strand, within BACOVA_03456at 199.598 kb on - strand, within BACOVA_03456at 199.737 kb on - strand, within BACOVA_03456at 199.744 kb on + strand, within BACOVA_03456at 199.747 kb on - strand, within BACOVA_03456at 199.782 kb on + strandat 199.883 kb on + strandat 199.884 kb on - strandat 199.887 kb on - strandat 199.887 kb on - strandat 199.904 kb on - strandat 199.912 kb on - strandat 199.928 kb on + strandat 199.929 kb on - strandat 199.941 kb on - strandat 199.946 kb on - strandat 200.007 kb on - strandat 200.012 kb on - strandat 200.043 kb on - strandat 200.075 kb on + strandat 200.075 kb on + strandat 200.076 kb on - strandat 200.078 kb on + strandat 200.100 kb on + strandat 200.101 kb on - strandat 200.103 kb on + strandat 200.150 kb on + strandat 200.151 kb on - strandat 200.157 kb on - strandat 200.181 kb on - strand, within BACOVA_03457at 200.216 kb on + strand, within BACOVA_03457at 200.217 kb on - strand, within BACOVA_03457at 200.279 kb on + strand, within BACOVA_03457at 200.306 kb on - strand, within BACOVA_03457at 200.309 kb on + strand, within BACOVA_03457at 200.309 kb on + strand, within BACOVA_03457at 200.309 kb on + strand, within BACOVA_03457at 200.310 kb on - strand, within BACOVA_03457at 200.310 kb on - strand, within BACOVA_03457at 200.325 kb on - strand, within BACOVA_03457at 200.325 kb on - strand, within BACOVA_03457at 200.333 kb on + strand, within BACOVA_03457at 200.333 kb on + strand, within BACOVA_03457at 200.333 kb on + strand, within BACOVA_03457at 200.333 kb on + strand, within BACOVA_03457at 200.334 kb on - strand, within BACOVA_03457at 200.334 kb on - strand, within BACOVA_03457at 200.337 kb on + strand, within BACOVA_03457at 200.337 kb on + strand, within BACOVA_03457at 200.338 kb on - strand, within BACOVA_03457at 200.356 kb on + strand, within BACOVA_03457at 200.357 kb on - strand, within BACOVA_03457at 200.363 kb on + strand, within BACOVA_03457at 200.366 kb on + strand, within BACOVA_03457at 200.366 kb on + strand, within BACOVA_03457at 200.368 kb on + strand, within BACOVA_03457at 200.369 kb on - strand, within BACOVA_03457at 200.369 kb on - strand, within BACOVA_03457at 200.474 kb on - strand, within BACOVA_03457at 200.475 kb on + strand, within BACOVA_03457at 200.476 kb on - strand, within BACOVA_03457at 200.480 kb on + strand, within BACOVA_03457at 200.480 kb on + strand, within BACOVA_03457at 200.480 kb on + strand, within BACOVA_03457at 200.480 kb on + strand, within BACOVA_03457at 200.484 kb on + strand, within BACOVA_03457at 200.519 kb on - strand, within BACOVA_03457at 200.568 kb on - strand, within BACOVA_03457at 200.568 kb on - strand, within BACOVA_03457at 200.617 kb on - strand, within BACOVA_03457at 200.634 kb on + strand, within BACOVA_03457at 200.634 kb on + strand, within BACOVA_03457at 200.634 kb on + strand, within BACOVA_03457at 200.634 kb on + strand, within BACOVA_03457at 200.635 kb on - strand, within BACOVA_03457at 200.635 kb on - strand, within BACOVA_03457at 200.635 kb on - strand, within BACOVA_03457at 200.635 kb on - strand, within BACOVA_03457at 200.635 kb on - strand, within BACOVA_03457at 200.666 kb on + strand, within BACOVA_03457at 200.698 kb on + strand, within BACOVA_03457at 200.823 kb on + strand, within BACOVA_03457at 200.824 kb on - strand, within BACOVA_03457

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C)
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197,557 + BACOVA_03455 0.25 -1.3
197,557 + BACOVA_03455 0.25 -2.0
197,557 + BACOVA_03455 0.25 +2.1
197,558 - BACOVA_03455 0.26 -1.4
197,558 - BACOVA_03455 0.26 +0.3
197,561 + BACOVA_03455 0.26 +0.1
197,562 - BACOVA_03455 0.26 -0.5
197,562 - BACOVA_03455 0.26 +0.0
197,562 - BACOVA_03455 0.26 +0.4
197,562 - BACOVA_03455 0.26 -1.3
197,563 + BACOVA_03455 0.26 -1.0
197,563 + BACOVA_03455 0.26 -0.3
197,564 - BACOVA_03455 0.26 -2.9
197,564 - BACOVA_03455 0.26 +0.6
197,599 + BACOVA_03455 0.29 +1.4
197,600 - BACOVA_03455 0.29 +2.6
197,663 - BACOVA_03455 0.34 -0.3
197,669 - BACOVA_03455 0.34 -1.1
197,678 - BACOVA_03455 0.35 +0.5
197,678 - BACOVA_03455 0.35 -1.9
197,679 + BACOVA_03455 0.35 +1.4
197,679 + BACOVA_03455 0.35 -1.5
197,680 - BACOVA_03455 0.35 -0.6
197,680 - BACOVA_03455 0.35 -2.1
197,720 - BACOVA_03455 0.38 +1.3
197,731 - BACOVA_03455 0.39 +1.0
197,761 + BACOVA_03455 0.41 +1.1
197,761 + BACOVA_03455 0.41 -0.3
197,761 + BACOVA_03455 0.41 +2.4
197,902 - BACOVA_03455 0.52 -0.0
197,940 - BACOVA_03455 0.55 +1.2
197,944 - BACOVA_03455 0.56 +0.5
197,947 - BACOVA_03455 0.56 +0.9
197,975 + BACOVA_03455 0.58 +1.1
197,976 - BACOVA_03455 0.58 +0.0
197,976 - BACOVA_03455 0.58 +1.1
197,982 + BACOVA_03455 0.59 -1.4
197,983 - BACOVA_03455 0.59 -0.6
198,077 + BACOVA_03455 0.66 +3.2
198,084 + BACOVA_03455 0.67 -0.0
198,085 - BACOVA_03455 0.67 -0.6
198,085 - BACOVA_03455 0.67 -0.4
198,118 - BACOVA_03455 0.69 +0.1
198,138 - BACOVA_03455 0.71 +2.2
198,165 + BACOVA_03455 0.73 -0.2
198,212 - BACOVA_03455 0.76 -0.2
198,215 + BACOVA_03455 0.77 +0.3
198,215 + BACOVA_03455 0.77 -0.2
198,215 + BACOVA_03455 0.77 -0.7
198,216 - BACOVA_03455 0.77 -2.0
198,328 + BACOVA_03455 0.86 +1.7
198,354 - BACOVA_03455 0.88 +0.2
198,368 + BACOVA_03455 0.89 -0.9
198,369 - BACOVA_03455 0.89 -0.1
198,369 - BACOVA_03455 0.89 +0.4
198,370 + BACOVA_03455 0.89 +0.7
198,376 + BACOVA_03455 0.89 +0.4
198,407 + +0.0
198,414 + +0.1
198,415 - +5.7
198,437 - -2.3
198,461 + -0.5
198,461 + +0.1
198,461 + +1.5
198,496 + -0.5
198,498 + +1.6
198,537 + +1.0
198,568 - -0.3
198,579 - -1.6
198,579 - +1.2
198,579 - -0.9
198,579 - +0.9
198,592 + -0.5
198,592 + -1.9
198,593 - +3.9
198,593 - +0.4
198,595 - +2.3
198,638 + +1.1
198,639 - -0.7
198,697 + BACOVA_03456 0.12 +3.2
198,728 + BACOVA_03456 0.14 +4.0
198,729 - BACOVA_03456 0.15 -0.0
198,729 - BACOVA_03456 0.15 -0.7
198,742 + BACOVA_03456 0.15 -0.8
198,743 - BACOVA_03456 0.16 +0.6
198,758 - BACOVA_03456 0.17 +1.5
198,762 - BACOVA_03456 0.17 -2.9
198,762 - BACOVA_03456 0.17 +1.3
198,796 + BACOVA_03456 0.19 -0.0
198,796 + BACOVA_03456 0.19 -0.2
198,796 + BACOVA_03456 0.19 +0.1
198,797 - BACOVA_03456 0.19 +1.4
198,815 + BACOVA_03456 0.21 -0.8
198,867 - BACOVA_03456 0.25 +1.2
198,954 + BACOVA_03456 0.31 +1.1
198,998 + BACOVA_03456 0.34 -0.5
199,043 - BACOVA_03456 0.37 +0.0
199,043 - BACOVA_03456 0.37 -1.4
199,086 - BACOVA_03456 0.41 +1.3
199,102 + BACOVA_03456 0.42 +0.4
199,186 + BACOVA_03456 0.48 +1.0
199,226 + BACOVA_03456 0.51 -0.5
199,293 + BACOVA_03456 0.56 -1.7
199,319 + BACOVA_03456 0.58 +1.8
199,320 - BACOVA_03456 0.58 -0.7
199,350 + BACOVA_03456 0.60 +0.4
199,412 + BACOVA_03456 0.64 +0.0
199,415 - BACOVA_03456 0.65 +1.7
199,471 + BACOVA_03456 0.69 +1.9
199,495 + BACOVA_03456 0.70 +0.8
199,496 - BACOVA_03456 0.70 -2.0
199,511 + BACOVA_03456 0.72 -1.9
199,511 + BACOVA_03456 0.72 +2.2
199,512 - BACOVA_03456 0.72 +0.7
199,521 - BACOVA_03456 0.72 +0.1
199,598 - BACOVA_03456 0.78 -0.8
199,598 - BACOVA_03456 0.78 +0.5
199,737 - BACOVA_03456 0.88 -0.1
199,744 + BACOVA_03456 0.89 +2.5
199,747 - BACOVA_03456 0.89 +0.7
199,782 + -1.5
199,883 + -1.9
199,884 - +1.7
199,887 - +0.0
199,887 - -0.5
199,904 - +2.2
199,912 - -1.3
199,928 + -0.5
199,929 - -0.3
199,941 - +1.8
199,946 - +0.1
200,007 - -0.6
200,012 - -0.3
200,043 - +1.1
200,075 + +0.5
200,075 + +0.9
200,076 - -1.0
200,078 + -1.6
200,100 + +0.3
200,101 - -0.6
200,103 + -1.6
200,150 + +0.6
200,151 - -0.1
200,157 - -0.1
200,181 - BACOVA_03457 0.11 +0.4
200,216 + BACOVA_03457 0.12 -0.9
200,217 - BACOVA_03457 0.12 -1.1
200,279 + BACOVA_03457 0.15 +0.6
200,306 - BACOVA_03457 0.16 +0.9
200,309 + BACOVA_03457 0.16 -0.4
200,309 + BACOVA_03457 0.16 +3.8
200,309 + BACOVA_03457 0.16 +0.1
200,310 - BACOVA_03457 0.16 -1.9
200,310 - BACOVA_03457 0.16 -0.5
200,325 - BACOVA_03457 0.17 +1.4
200,325 - BACOVA_03457 0.17 -0.9
200,333 + BACOVA_03457 0.17 +1.0
200,333 + BACOVA_03457 0.17 +0.6
200,333 + BACOVA_03457 0.17 +1.6
200,333 + BACOVA_03457 0.17 +2.2
200,334 - BACOVA_03457 0.17 +0.5
200,334 - BACOVA_03457 0.17 -2.1
200,337 + BACOVA_03457 0.17 +2.1
200,337 + BACOVA_03457 0.17 -0.2
200,338 - BACOVA_03457 0.17 -2.6
200,356 + BACOVA_03457 0.18 -1.4
200,357 - BACOVA_03457 0.18 -0.6
200,363 + BACOVA_03457 0.18 +0.6
200,366 + BACOVA_03457 0.18 +0.3
200,366 + BACOVA_03457 0.18 +3.0
200,368 + BACOVA_03457 0.19 +0.7
200,369 - BACOVA_03457 0.19 +0.7
200,369 - BACOVA_03457 0.19 -2.5
200,474 - BACOVA_03457 0.23 +0.2
200,475 + BACOVA_03457 0.23 -0.8
200,476 - BACOVA_03457 0.23 +1.7
200,480 + BACOVA_03457 0.23 +0.4
200,480 + BACOVA_03457 0.23 +0.3
200,480 + BACOVA_03457 0.23 -0.2
200,480 + BACOVA_03457 0.23 -0.1
200,484 + BACOVA_03457 0.23 +0.1
200,519 - BACOVA_03457 0.25 +2.4
200,568 - BACOVA_03457 0.27 +0.1
200,568 - BACOVA_03457 0.27 +0.0
200,617 - BACOVA_03457 0.29 +0.1
200,634 + BACOVA_03457 0.29 +2.4
200,634 + BACOVA_03457 0.29 +1.1
200,634 + BACOVA_03457 0.29 +1.1
200,634 + BACOVA_03457 0.29 -1.4
200,635 - BACOVA_03457 0.29 -2.6
200,635 - BACOVA_03457 0.29 +1.1
200,635 - BACOVA_03457 0.29 -2.3
200,635 - BACOVA_03457 0.29 -0.5
200,635 - BACOVA_03457 0.29 +2.2
200,666 + BACOVA_03457 0.31 +1.8
200,698 + BACOVA_03457 0.32 -1.2
200,823 + BACOVA_03457 0.37 -2.7
200,824 - BACOVA_03457 0.37 +1.7

Or see this region's nucleotide sequence