Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03355

Experiment: amylopectin from maize 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03352 and BACOVA_03353 are separated by 9 nucleotidesBACOVA_03353 and BACOVA_03354 are separated by 56 nucleotidesBACOVA_03354 and BACOVA_03355 are separated by 180 nucleotidesBACOVA_03355 and BACOVA_03356 are separated by 34 nucleotides BACOVA_03352: BACOVA_03352 - putative DNA-binding protein, at 50,602 to 51,237 _03352 BACOVA_03353: BACOVA_03353 - hypothetical protein, at 51,247 to 51,402 _03353 BACOVA_03354: BACOVA_03354 - hypothetical protein, at 51,459 to 51,926 _03354 BACOVA_03355: BACOVA_03355 - hypothetical protein, at 52,107 to 52,229 _03355 BACOVA_03356: BACOVA_03356 - hypothetical protein, at 52,264 to 53,283 _03356 Position (kb) 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 51.171 kb on + strand, within BACOVA_03352at 51.185 kb on - strandat 51.258 kb on - strandat 51.258 kb on - strandat 51.258 kb on - strandat 51.282 kb on - strand, within BACOVA_03353at 51.282 kb on - strand, within BACOVA_03353at 51.366 kb on + strand, within BACOVA_03353at 51.373 kb on - strand, within BACOVA_03353at 51.375 kb on - strand, within BACOVA_03353at 51.375 kb on - strand, within BACOVA_03353at 51.383 kb on + strand, within BACOVA_03353at 51.384 kb on - strand, within BACOVA_03353at 51.405 kb on - strandat 51.405 kb on - strandat 51.418 kb on + strandat 51.440 kb on + strandat 51.440 kb on + strandat 51.443 kb on - strandat 51.460 kb on + strandat 51.461 kb on - strandat 51.464 kb on + strandat 51.464 kb on + strandat 51.513 kb on - strand, within BACOVA_03354at 51.525 kb on + strand, within BACOVA_03354at 51.554 kb on - strand, within BACOVA_03354at 51.554 kb on - strand, within BACOVA_03354at 51.554 kb on - strand, within BACOVA_03354at 51.555 kb on + strand, within BACOVA_03354at 51.577 kb on - strand, within BACOVA_03354at 51.585 kb on + strand, within BACOVA_03354at 51.591 kb on - strand, within BACOVA_03354at 51.617 kb on + strand, within BACOVA_03354at 51.618 kb on - strand, within BACOVA_03354at 51.643 kb on + strand, within BACOVA_03354at 51.664 kb on + strand, within BACOVA_03354at 51.724 kb on + strand, within BACOVA_03354at 51.725 kb on - strand, within BACOVA_03354at 51.754 kb on + strand, within BACOVA_03354at 51.808 kb on - strand, within BACOVA_03354at 51.812 kb on + strand, within BACOVA_03354at 51.813 kb on - strand, within BACOVA_03354at 51.902 kb on + strandat 51.902 kb on + strandat 51.932 kb on + strandat 51.955 kb on + strandat 51.956 kb on - strandat 51.991 kb on - strandat 51.994 kb on + strandat 52.012 kb on + strandat 52.013 kb on - strandat 52.030 kb on + strandat 52.031 kb on - strandat 52.031 kb on - strandat 52.031 kb on - strandat 52.031 kb on - strandat 52.033 kb on + strandat 52.033 kb on + strandat 52.033 kb on + strandat 52.034 kb on - strandat 52.057 kb on - strandat 52.096 kb on + strandat 52.102 kb on + strandat 52.134 kb on + strand, within BACOVA_03355at 52.173 kb on - strand, within BACOVA_03355at 52.173 kb on - strand, within BACOVA_03355at 52.173 kb on - strand, within BACOVA_03355at 52.175 kb on + strand, within BACOVA_03355at 52.175 kb on + strand, within BACOVA_03355at 52.176 kb on - strand, within BACOVA_03355at 52.176 kb on - strand, within BACOVA_03355at 52.176 kb on - strand, within BACOVA_03355at 52.181 kb on - strand, within BACOVA_03355at 52.193 kb on - strand, within BACOVA_03355at 52.198 kb on + strand, within BACOVA_03355at 52.199 kb on - strand, within BACOVA_03355at 52.290 kb on - strandat 52.290 kb on - strandat 52.290 kb on - strandat 52.301 kb on + strandat 52.301 kb on + strandat 52.301 kb on + strandat 52.302 kb on - strandat 52.302 kb on - strandat 52.364 kb on - strandat 52.414 kb on - strand, within BACOVA_03356at 52.414 kb on - strand, within BACOVA_03356at 52.444 kb on - strand, within BACOVA_03356at 52.481 kb on - strand, within BACOVA_03356at 52.497 kb on + strand, within BACOVA_03356at 52.524 kb on + strand, within BACOVA_03356at 52.540 kb on + strand, within BACOVA_03356at 52.541 kb on - strand, within BACOVA_03356at 52.541 kb on - strand, within BACOVA_03356at 52.543 kb on - strand, within BACOVA_03356at 52.543 kb on - strand, within BACOVA_03356at 52.565 kb on + strand, within BACOVA_03356at 52.565 kb on + strand, within BACOVA_03356at 52.625 kb on - strand, within BACOVA_03356at 52.625 kb on - strand, within BACOVA_03356at 52.647 kb on + strand, within BACOVA_03356at 52.686 kb on + strand, within BACOVA_03356at 52.707 kb on - strand, within BACOVA_03356at 52.786 kb on + strand, within BACOVA_03356at 52.790 kb on + strand, within BACOVA_03356at 52.792 kb on + strand, within BACOVA_03356at 52.792 kb on + strand, within BACOVA_03356at 52.793 kb on - strand, within BACOVA_03356at 52.793 kb on - strand, within BACOVA_03356at 52.804 kb on + strand, within BACOVA_03356at 52.808 kb on + strand, within BACOVA_03356at 52.822 kb on - strand, within BACOVA_03356at 52.822 kb on - strand, within BACOVA_03356at 52.826 kb on + strand, within BACOVA_03356at 52.826 kb on + strand, within BACOVA_03356at 52.826 kb on + strand, within BACOVA_03356at 52.827 kb on - strand, within BACOVA_03356at 52.827 kb on - strand, within BACOVA_03356at 52.832 kb on + strand, within BACOVA_03356at 52.833 kb on - strand, within BACOVA_03356at 52.893 kb on - strand, within BACOVA_03356at 52.893 kb on - strand, within BACOVA_03356at 52.937 kb on + strand, within BACOVA_03356at 52.937 kb on + strand, within BACOVA_03356at 52.938 kb on - strand, within BACOVA_03356at 52.949 kb on - strand, within BACOVA_03356at 52.969 kb on + strand, within BACOVA_03356at 52.970 kb on - strand, within BACOVA_03356at 52.970 kb on - strand, within BACOVA_03356at 52.970 kb on - strand, within BACOVA_03356at 52.970 kb on - strand, within BACOVA_03356at 52.973 kb on - strand, within BACOVA_03356at 52.975 kb on - strand, within BACOVA_03356at 52.986 kb on + strand, within BACOVA_03356at 53.017 kb on + strand, within BACOVA_03356at 53.018 kb on - strand, within BACOVA_03356at 53.020 kb on - strand, within BACOVA_03356at 53.086 kb on - strand, within BACOVA_03356at 53.089 kb on + strand, within BACOVA_03356at 53.095 kb on + strand, within BACOVA_03356at 53.141 kb on + strand, within BACOVA_03356at 53.141 kb on + strand, within BACOVA_03356at 53.146 kb on - strand, within BACOVA_03356at 53.191 kb on - strandat 53.209 kb on - strandat 53.216 kb on - strandat 53.225 kb on + strandat 53.225 kb on + strandat 53.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C)
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51,171 + BACOVA_03352 0.89 +0.4
51,185 - +1.7
51,258 - -0.8
51,258 - +0.9
51,258 - -0.4
51,282 - BACOVA_03353 0.22 -1.2
51,282 - BACOVA_03353 0.22 +0.7
51,366 + BACOVA_03353 0.76 -1.8
51,373 - BACOVA_03353 0.81 -1.8
51,375 - BACOVA_03353 0.82 +0.9
51,375 - BACOVA_03353 0.82 -1.6
51,383 + BACOVA_03353 0.87 -1.1
51,384 - BACOVA_03353 0.88 -2.2
51,405 - +0.6
51,405 - -1.3
51,418 + -1.1
51,440 + +3.0
51,440 + -1.5
51,443 - +0.8
51,460 + +3.9
51,461 - -0.2
51,464 + -1.3
51,464 + -0.4
51,513 - BACOVA_03354 0.12 +0.4
51,525 + BACOVA_03354 0.14 +0.5
51,554 - BACOVA_03354 0.20 -2.9
51,554 - BACOVA_03354 0.20 -1.1
51,554 - BACOVA_03354 0.20 +1.3
51,555 + BACOVA_03354 0.21 -0.0
51,577 - BACOVA_03354 0.25 -0.5
51,585 + BACOVA_03354 0.27 +1.4
51,591 - BACOVA_03354 0.28 +1.7
51,617 + BACOVA_03354 0.34 -0.2
51,618 - BACOVA_03354 0.34 -1.0
51,643 + BACOVA_03354 0.39 -0.7
51,664 + BACOVA_03354 0.44 -0.8
51,724 + BACOVA_03354 0.57 +0.7
51,725 - BACOVA_03354 0.57 +1.7
51,754 + BACOVA_03354 0.63 -2.4
51,808 - BACOVA_03354 0.75 -0.1
51,812 + BACOVA_03354 0.75 -1.9
51,813 - BACOVA_03354 0.76 +0.1
51,902 + -1.5
51,902 + -0.3
51,932 + -1.9
51,955 + +1.8
51,956 - +0.8
51,991 - -0.1
51,994 + -0.2
52,012 + -0.3
52,013 - -1.6
52,030 + -0.3
52,031 - -0.3
52,031 - -0.0
52,031 - -1.3
52,031 - +0.2
52,033 + -2.2
52,033 + -0.1
52,033 + +3.2
52,034 - +1.2
52,057 - -0.1
52,096 + +1.3
52,102 + +1.0
52,134 + BACOVA_03355 0.22 -0.4
52,173 - BACOVA_03355 0.54 +2.6
52,173 - BACOVA_03355 0.54 -1.1
52,173 - BACOVA_03355 0.54 -0.5
52,175 + BACOVA_03355 0.55 -0.1
52,175 + BACOVA_03355 0.55 -0.9
52,176 - BACOVA_03355 0.56 +0.2
52,176 - BACOVA_03355 0.56 -0.2
52,176 - BACOVA_03355 0.56 +0.7
52,181 - BACOVA_03355 0.60 -2.9
52,193 - BACOVA_03355 0.70 -0.0
52,198 + BACOVA_03355 0.74 -2.3
52,199 - BACOVA_03355 0.75 +0.9
52,290 - -1.5
52,290 - -2.0
52,290 - -1.8
52,301 + -0.6
52,301 + -1.4
52,301 + -0.3
52,302 - -0.1
52,302 - -0.1
52,364 - -0.3
52,414 - BACOVA_03356 0.15 +1.2
52,414 - BACOVA_03356 0.15 -1.1
52,444 - BACOVA_03356 0.18 -1.3
52,481 - BACOVA_03356 0.21 +0.1
52,497 + BACOVA_03356 0.23 +0.0
52,524 + BACOVA_03356 0.25 -0.1
52,540 + BACOVA_03356 0.27 +1.9
52,541 - BACOVA_03356 0.27 +1.1
52,541 - BACOVA_03356 0.27 -2.0
52,543 - BACOVA_03356 0.27 -2.1
52,543 - BACOVA_03356 0.27 +1.0
52,565 + BACOVA_03356 0.30 -1.6
52,565 + BACOVA_03356 0.30 +1.0
52,625 - BACOVA_03356 0.35 -0.0
52,625 - BACOVA_03356 0.35 +2.1
52,647 + BACOVA_03356 0.38 -0.6
52,686 + BACOVA_03356 0.41 -1.2
52,707 - BACOVA_03356 0.43 -2.6
52,786 + BACOVA_03356 0.51 +0.6
52,790 + BACOVA_03356 0.52 +0.1
52,792 + BACOVA_03356 0.52 +1.7
52,792 + BACOVA_03356 0.52 -1.0
52,793 - BACOVA_03356 0.52 -0.4
52,793 - BACOVA_03356 0.52 +0.2
52,804 + BACOVA_03356 0.53 -1.5
52,808 + BACOVA_03356 0.53 -0.7
52,822 - BACOVA_03356 0.55 +0.1
52,822 - BACOVA_03356 0.55 -0.4
52,826 + BACOVA_03356 0.55 +0.7
52,826 + BACOVA_03356 0.55 +0.9
52,826 + BACOVA_03356 0.55 +2.4
52,827 - BACOVA_03356 0.55 -1.0
52,827 - BACOVA_03356 0.55 -0.2
52,832 + BACOVA_03356 0.56 -0.3
52,833 - BACOVA_03356 0.56 -0.6
52,893 - BACOVA_03356 0.62 -2.0
52,893 - BACOVA_03356 0.62 +0.6
52,937 + BACOVA_03356 0.66 +0.1
52,937 + BACOVA_03356 0.66 +1.1
52,938 - BACOVA_03356 0.66 -1.4
52,949 - BACOVA_03356 0.67 +0.7
52,969 + BACOVA_03356 0.69 -1.9
52,970 - BACOVA_03356 0.69 +0.0
52,970 - BACOVA_03356 0.69 -1.1
52,970 - BACOVA_03356 0.69 -0.4
52,970 - BACOVA_03356 0.69 -1.0
52,973 - BACOVA_03356 0.70 +0.0
52,975 - BACOVA_03356 0.70 -0.6
52,986 + BACOVA_03356 0.71 -1.5
53,017 + BACOVA_03356 0.74 +0.7
53,018 - BACOVA_03356 0.74 -0.9
53,020 - BACOVA_03356 0.74 -1.0
53,086 - BACOVA_03356 0.81 -0.1
53,089 + BACOVA_03356 0.81 +0.4
53,095 + BACOVA_03356 0.81 +0.6
53,141 + BACOVA_03356 0.86 -0.9
53,141 + BACOVA_03356 0.86 +0.4
53,146 - BACOVA_03356 0.86 -0.4
53,191 - -0.2
53,209 - +0.8
53,216 - +0.2
53,225 + -0.9
53,225 + -1.2
53,226 - +1.8

Or see this region's nucleotide sequence