Experiment: amylopectin from maize 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03214 and BACOVA_03216 are separated by 5 nucleotides BACOVA_03216 and BACOVA_03215 overlap by 357 nucleotides BACOVA_03215 and BACOVA_03217 are separated by 477 nucleotides
BACOVA_03214: BACOVA_03214 - hypothetical protein, at 302,702 to 304,012
_03214
BACOVA_03216: BACOVA_03216 - hypothetical protein, at 304,018 to 304,527
_03216
BACOVA_03215: BACOVA_03215 - hypothetical protein, at 304,171 to 304,350
_03215
BACOVA_03217: BACOVA_03217 - putative DNA-binding protein, at 304,828 to 305,436
_03217
Position (kb) 304
305 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 303.049 kb on + strand, within BACOVA_03214 at 303.049 kb on + strand, within BACOVA_03214 at 303.050 kb on - strand, within BACOVA_03214 at 303.067 kb on - strand, within BACOVA_03214 at 303.089 kb on + strand, within BACOVA_03214 at 303.120 kb on - strand, within BACOVA_03214 at 303.175 kb on - strand, within BACOVA_03214 at 303.190 kb on + strand, within BACOVA_03214 at 303.210 kb on - strand, within BACOVA_03214 at 303.255 kb on - strand, within BACOVA_03214 at 303.281 kb on + strand, within BACOVA_03214 at 303.291 kb on - strand, within BACOVA_03214 at 303.314 kb on - strand, within BACOVA_03214 at 303.314 kb on - strand, within BACOVA_03214 at 303.324 kb on - strand, within BACOVA_03214 at 303.324 kb on - strand, within BACOVA_03214 at 303.324 kb on - strand, within BACOVA_03214 at 303.326 kb on + strand, within BACOVA_03214 at 303.362 kb on - strand, within BACOVA_03214 at 303.411 kb on - strand, within BACOVA_03214 at 303.435 kb on - strand, within BACOVA_03214 at 303.437 kb on + strand, within BACOVA_03214 at 303.437 kb on + strand, within BACOVA_03214 at 303.438 kb on - strand, within BACOVA_03214 at 303.438 kb on - strand, within BACOVA_03214 at 303.439 kb on + strand, within BACOVA_03214 at 303.439 kb on + strand, within BACOVA_03214 at 303.470 kb on + strand, within BACOVA_03214 at 303.473 kb on - strand, within BACOVA_03214 at 303.473 kb on - strand, within BACOVA_03214 at 303.498 kb on - strand, within BACOVA_03214 at 303.547 kb on - strand, within BACOVA_03214 at 303.615 kb on + strand, within BACOVA_03214 at 303.615 kb on + strand, within BACOVA_03214 at 303.615 kb on + strand, within BACOVA_03214 at 303.672 kb on - strand, within BACOVA_03214 at 303.681 kb on + strand, within BACOVA_03214 at 303.684 kb on - strand, within BACOVA_03214 at 303.684 kb on - strand, within BACOVA_03214 at 303.684 kb on - strand, within BACOVA_03214 at 303.723 kb on - strand, within BACOVA_03214 at 303.739 kb on + strand, within BACOVA_03214 at 303.739 kb on + strand, within BACOVA_03214 at 303.740 kb on - strand, within BACOVA_03214 at 303.740 kb on - strand, within BACOVA_03214 at 303.740 kb on - strand, within BACOVA_03214 at 303.741 kb on + strand, within BACOVA_03214 at 303.741 kb on + strand, within BACOVA_03214 at 303.742 kb on - strand, within BACOVA_03214 at 303.756 kb on + strand, within BACOVA_03214 at 303.760 kb on - strand, within BACOVA_03214 at 303.795 kb on - strand, within BACOVA_03214 at 303.850 kb on + strand, within BACOVA_03214 at 303.850 kb on + strand, within BACOVA_03214 at 303.851 kb on - strand, within BACOVA_03214 at 303.853 kb on + strand, within BACOVA_03214 at 303.861 kb on - strand, within BACOVA_03214 at 303.944 kb on - strand at 303.972 kb on - strand at 303.987 kb on - strand at 304.039 kb on + strand at 304.049 kb on - strand at 304.053 kb on + strand at 304.053 kb on + strand at 304.054 kb on - strand at 304.054 kb on - strand at 304.055 kb on + strand at 304.056 kb on - strand at 304.056 kb on - strand at 304.057 kb on + strand at 304.057 kb on + strand at 304.057 kb on + strand at 304.058 kb on - strand at 304.064 kb on - strand at 304.083 kb on + strand, within BACOVA_03216 at 304.092 kb on + strand, within BACOVA_03216 at 304.125 kb on + strand, within BACOVA_03216 at 304.134 kb on + strand, within BACOVA_03216 at 304.218 kb on + strand at 304.249 kb on - strand at 304.348 kb on + strand at 304.348 kb on + strand at 304.358 kb on + strand at 304.358 kb on + strand at 304.359 kb on - strand at 304.363 kb on + strand at 304.393 kb on - strand at 304.436 kb on - strand at 304.436 kb on - strand at 304.462 kb on + strand at 304.477 kb on - strand at 304.496 kb on - strand at 304.499 kb on + strand at 304.509 kb on + strand at 304.510 kb on - strand at 304.510 kb on - strand at 304.516 kb on + strand at 304.535 kb on + strand at 304.545 kb on + strand at 304.545 kb on + strand at 304.580 kb on + strand at 304.580 kb on + strand at 304.580 kb on + strand at 304.588 kb on - strand at 304.602 kb on + strand at 304.602 kb on + strand at 304.602 kb on + strand at 304.603 kb on - strand at 304.645 kb on - strand at 304.653 kb on - strand at 304.678 kb on + strand at 304.678 kb on + strand at 304.682 kb on - strand at 304.691 kb on - strand at 304.714 kb on - strand at 304.733 kb on + strand at 304.787 kb on + strand at 304.787 kb on + strand at 304.798 kb on - strand at 304.892 kb on - strand, within BACOVA_03217 at 304.892 kb on - strand, within BACOVA_03217 at 304.942 kb on + strand, within BACOVA_03217 at 304.959 kb on + strand, within BACOVA_03217 at 304.960 kb on - strand, within BACOVA_03217 at 304.960 kb on - strand, within BACOVA_03217 at 304.961 kb on + strand, within BACOVA_03217 at 304.962 kb on - strand, within BACOVA_03217 at 305.119 kb on + strand, within BACOVA_03217 at 305.149 kb on + strand, within BACOVA_03217 at 305.150 kb on - strand, within BACOVA_03217 at 305.150 kb on - strand, within BACOVA_03217 at 305.253 kb on + strand, within BACOVA_03217 at 305.432 kb on + strand at 305.432 kb on + strand at 305.445 kb on + strand at 305.445 kb on + strand at 305.510 kb on + strand at 305.524 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C) remove 303,049 + BACOVA_03214 0.26 +2.8 303,049 + BACOVA_03214 0.26 +0.1 303,050 - BACOVA_03214 0.27 -1.5 303,067 - BACOVA_03214 0.28 +0.1 303,089 + BACOVA_03214 0.30 +0.5 303,120 - BACOVA_03214 0.32 -1.0 303,175 - BACOVA_03214 0.36 +1.0 303,190 + BACOVA_03214 0.37 +1.3 303,210 - BACOVA_03214 0.39 -0.4 303,255 - BACOVA_03214 0.42 +2.3 303,281 + BACOVA_03214 0.44 +0.6 303,291 - BACOVA_03214 0.45 -1.7 303,314 - BACOVA_03214 0.47 -0.2 303,314 - BACOVA_03214 0.47 +4.5 303,324 - BACOVA_03214 0.47 -0.8 303,324 - BACOVA_03214 0.47 +2.3 303,324 - BACOVA_03214 0.47 -0.4 303,326 + BACOVA_03214 0.48 -1.9 303,362 - BACOVA_03214 0.50 +2.5 303,411 - BACOVA_03214 0.54 -1.8 303,435 - BACOVA_03214 0.56 +0.2 303,437 + BACOVA_03214 0.56 +1.1 303,437 + BACOVA_03214 0.56 -1.2 303,438 - BACOVA_03214 0.56 -2.0 303,438 - BACOVA_03214 0.56 +0.5 303,439 + BACOVA_03214 0.56 -0.2 303,439 + BACOVA_03214 0.56 +0.3 303,470 + BACOVA_03214 0.59 +0.7 303,473 - BACOVA_03214 0.59 +1.7 303,473 - BACOVA_03214 0.59 +1.0 303,498 - BACOVA_03214 0.61 +0.1 303,547 - BACOVA_03214 0.64 +0.2 303,615 + BACOVA_03214 0.70 -0.9 303,615 + BACOVA_03214 0.70 +0.3 303,615 + BACOVA_03214 0.70 -1.2 303,672 - BACOVA_03214 0.74 +0.3 303,681 + BACOVA_03214 0.75 -0.9 303,684 - BACOVA_03214 0.75 -1.3 303,684 - BACOVA_03214 0.75 +2.0 303,684 - BACOVA_03214 0.75 -1.6 303,723 - BACOVA_03214 0.78 +1.5 303,739 + BACOVA_03214 0.79 +2.0 303,739 + BACOVA_03214 0.79 -0.5 303,740 - BACOVA_03214 0.79 -1.3 303,740 - BACOVA_03214 0.79 +1.9 303,740 - BACOVA_03214 0.79 -0.6 303,741 + BACOVA_03214 0.79 -0.9 303,741 + BACOVA_03214 0.79 -0.3 303,742 - BACOVA_03214 0.79 +1.7 303,756 + BACOVA_03214 0.80 +0.1 303,760 - BACOVA_03214 0.81 -1.7 303,795 - BACOVA_03214 0.83 +0.3 303,850 + BACOVA_03214 0.88 -1.6 303,850 + BACOVA_03214 0.88 +0.6 303,851 - BACOVA_03214 0.88 -0.9 303,853 + BACOVA_03214 0.88 +0.7 303,861 - BACOVA_03214 0.88 -1.8 303,944 - -0.8 303,972 - -0.5 303,987 - +1.4 304,039 + +0.1 304,049 - +0.1 304,053 + -2.0 304,053 + -0.9 304,054 - +0.5 304,054 - +1.9 304,055 + -1.7 304,056 - -0.3 304,056 - -0.8 304,057 + -0.5 304,057 + +1.6 304,057 + +1.3 304,058 - +0.3 304,064 - -1.7 304,083 + BACOVA_03216 0.13 +0.1 304,092 + BACOVA_03216 0.15 -3.0 304,125 + BACOVA_03216 0.21 +0.5 304,134 + BACOVA_03216 0.23 -0.6 304,218 + +0.4 304,249 - -2.2 304,348 + -0.3 304,348 + -1.9 304,358 + +1.5 304,358 + -0.3 304,359 - -2.9 304,363 + +2.1 304,393 - -0.6 304,436 - +1.0 304,436 - +1.3 304,462 + -2.0 304,477 - -1.7 304,496 - +0.5 304,499 + +0.6 304,509 + -1.2 304,510 - -0.9 304,510 - +0.7 304,516 + -0.0 304,535 + +1.1 304,545 + -1.8 304,545 + -0.6 304,580 + +2.4 304,580 + -0.7 304,580 + -3.3 304,588 - -1.2 304,602 + -0.7 304,602 + +0.2 304,602 + +1.0 304,603 - +1.8 304,645 - -0.8 304,653 - -0.9 304,678 + -1.2 304,678 + -1.3 304,682 - -0.7 304,691 - +0.4 304,714 - -0.3 304,733 + +1.4 304,787 + -0.9 304,787 + -0.8 304,798 - +1.9 304,892 - BACOVA_03217 0.11 +1.8 304,892 - BACOVA_03217 0.11 +0.9 304,942 + BACOVA_03217 0.19 -1.7 304,959 + BACOVA_03217 0.22 -0.1 304,960 - BACOVA_03217 0.22 -1.1 304,960 - BACOVA_03217 0.22 -1.0 304,961 + BACOVA_03217 0.22 +0.2 304,962 - BACOVA_03217 0.22 -1.0 305,119 + BACOVA_03217 0.48 -0.0 305,149 + BACOVA_03217 0.53 +0.1 305,150 - BACOVA_03217 0.53 -0.7 305,150 - BACOVA_03217 0.53 -1.8 305,253 + BACOVA_03217 0.70 +1.7 305,432 + -1.3 305,432 + +1.1 305,445 + +0.3 305,445 + +0.8 305,510 + +0.8 305,524 - -1.9
Or see this region's nucleotide sequence