Experiment: amylopectin from maize 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03147 and BACOVA_03148 overlap by 11 nucleotides BACOVA_03148 and BACOVA_03149 are separated by 114 nucleotides BACOVA_03149 and BACOVA_03150 are separated by 54 nucleotides BACOVA_03150 and BACOVA_03151 are separated by 36 nucleotides
BACOVA_03147: BACOVA_03147 - ABC 3 transport family protein, at 236,636 to 237,460
_03147
BACOVA_03148: BACOVA_03148 - hypothetical protein, at 237,450 to 237,893
_03148
BACOVA_03149: BACOVA_03149 - hypothetical protein, at 238,008 to 238,340
_03149
BACOVA_03150: BACOVA_03150 - leucine Rich Repeat protein, at 238,395 to 239,135
_03150
BACOVA_03151: BACOVA_03151 - peptidase, M28 family, at 239,172 to 240,173
_03151
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 237.428 kb on - strand at 237.428 kb on - strand at 237.428 kb on - strand at 237.435 kb on - strand at 237.438 kb on - strand at 237.472 kb on - strand at 237.596 kb on - strand, within BACOVA_03148 at 237.635 kb on - strand, within BACOVA_03148 at 237.635 kb on - strand, within BACOVA_03148 at 237.686 kb on - strand, within BACOVA_03148 at 237.691 kb on - strand, within BACOVA_03148 at 237.877 kb on - strand at 237.900 kb on - strand at 237.902 kb on - strand at 237.938 kb on - strand at 237.938 kb on - strand at 237.957 kb on + strand at 237.990 kb on + strand at 237.991 kb on - strand at 237.993 kb on + strand at 237.994 kb on - strand at 238.003 kb on - strand at 238.022 kb on + strand at 238.022 kb on + strand at 238.023 kb on - strand at 238.023 kb on - strand at 238.024 kb on + strand at 238.024 kb on + strand at 238.024 kb on + strand at 238.025 kb on - strand at 238.027 kb on + strand at 238.058 kb on - strand, within BACOVA_03149 at 238.058 kb on - strand, within BACOVA_03149 at 238.085 kb on + strand, within BACOVA_03149 at 238.196 kb on - strand, within BACOVA_03149 at 238.219 kb on + strand, within BACOVA_03149 at 238.219 kb on + strand, within BACOVA_03149 at 238.220 kb on - strand, within BACOVA_03149 at 238.250 kb on - strand, within BACOVA_03149 at 238.282 kb on + strand, within BACOVA_03149 at 238.283 kb on - strand, within BACOVA_03149 at 238.283 kb on - strand, within BACOVA_03149 at 238.283 kb on - strand, within BACOVA_03149 at 238.285 kb on - strand, within BACOVA_03149 at 238.286 kb on + strand, within BACOVA_03149 at 238.286 kb on + strand, within BACOVA_03149 at 238.286 kb on + strand, within BACOVA_03149 at 238.286 kb on + strand, within BACOVA_03149 at 238.286 kb on + strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.299 kb on - strand, within BACOVA_03149 at 238.306 kb on + strand, within BACOVA_03149 at 238.307 kb on - strand at 238.308 kb on + strand at 238.309 kb on - strand at 238.309 kb on - strand at 238.338 kb on + strand at 238.338 kb on + strand at 238.339 kb on - strand at 238.344 kb on - strand at 238.349 kb on + strand at 238.351 kb on + strand at 238.351 kb on + strand at 238.351 kb on + strand at 238.352 kb on - strand at 238.383 kb on + strand at 238.457 kb on + strand at 238.469 kb on + strand, within BACOVA_03150 at 238.469 kb on + strand, within BACOVA_03150 at 238.469 kb on + strand, within BACOVA_03150 at 238.485 kb on - strand, within BACOVA_03150 at 238.547 kb on + strand, within BACOVA_03150 at 238.548 kb on - strand, within BACOVA_03150 at 238.549 kb on + strand, within BACOVA_03150 at 238.582 kb on + strand, within BACOVA_03150 at 238.617 kb on + strand, within BACOVA_03150 at 238.626 kb on + strand, within BACOVA_03150 at 238.627 kb on - strand, within BACOVA_03150 at 238.628 kb on + strand, within BACOVA_03150 at 238.677 kb on - strand, within BACOVA_03150 at 238.691 kb on + strand, within BACOVA_03150 at 238.699 kb on + strand, within BACOVA_03150 at 238.699 kb on + strand, within BACOVA_03150 at 238.699 kb on + strand, within BACOVA_03150 at 238.700 kb on - strand, within BACOVA_03150 at 238.744 kb on + strand, within BACOVA_03150 at 238.744 kb on + strand, within BACOVA_03150 at 238.781 kb on + strand, within BACOVA_03150 at 238.782 kb on - strand, within BACOVA_03150 at 238.783 kb on + strand, within BACOVA_03150 at 238.813 kb on + strand, within BACOVA_03150 at 238.824 kb on + strand, within BACOVA_03150 at 238.825 kb on - strand, within BACOVA_03150 at 238.862 kb on + strand, within BACOVA_03150 at 238.863 kb on - strand, within BACOVA_03150 at 238.865 kb on + strand, within BACOVA_03150 at 238.866 kb on - strand, within BACOVA_03150 at 238.889 kb on + strand, within BACOVA_03150 at 238.890 kb on - strand, within BACOVA_03150 at 238.898 kb on - strand, within BACOVA_03150 at 238.898 kb on - strand, within BACOVA_03150 at 238.898 kb on - strand, within BACOVA_03150 at 238.930 kb on + strand, within BACOVA_03150 at 238.931 kb on - strand, within BACOVA_03150 at 238.941 kb on + strand, within BACOVA_03150 at 238.980 kb on - strand, within BACOVA_03150 at 238.980 kb on - strand, within BACOVA_03150 at 239.060 kb on + strand, within BACOVA_03150 at 239.066 kb on + strand at 239.066 kb on + strand at 239.087 kb on + strand at 239.139 kb on - strand at 239.155 kb on + strand at 239.155 kb on + strand at 239.162 kb on + strand at 239.162 kb on + strand at 239.166 kb on + strand at 239.166 kb on + strand at 239.167 kb on - strand at 239.167 kb on - strand at 239.167 kb on - strand at 239.167 kb on - strand at 239.167 kb on - strand at 239.224 kb on + strand at 239.262 kb on - strand at 239.285 kb on + strand, within BACOVA_03151 at 239.288 kb on + strand, within BACOVA_03151 at 239.361 kb on + strand, within BACOVA_03151 at 239.362 kb on - strand, within BACOVA_03151 at 239.362 kb on - strand, within BACOVA_03151 at 239.363 kb on + strand, within BACOVA_03151 at 239.364 kb on - strand, within BACOVA_03151 at 239.378 kb on - strand, within BACOVA_03151 at 239.392 kb on + strand, within BACOVA_03151 at 239.392 kb on + strand, within BACOVA_03151 at 239.412 kb on + strand, within BACOVA_03151 at 239.433 kb on + strand, within BACOVA_03151 at 239.434 kb on - strand, within BACOVA_03151 at 239.485 kb on + strand, within BACOVA_03151 at 239.490 kb on - strand, within BACOVA_03151 at 239.558 kb on + strand, within BACOVA_03151 at 239.568 kb on + strand, within BACOVA_03151 at 239.568 kb on + strand, within BACOVA_03151 at 239.599 kb on + strand, within BACOVA_03151 at 239.600 kb on - strand, within BACOVA_03151 at 239.632 kb on + strand, within BACOVA_03151 at 239.632 kb on + strand, within BACOVA_03151 at 239.632 kb on + strand, within BACOVA_03151 at 239.633 kb on - strand, within BACOVA_03151 at 239.634 kb on + strand, within BACOVA_03151 at 239.684 kb on - strand, within BACOVA_03151 at 239.775 kb on - strand, within BACOVA_03151 at 239.803 kb on + strand, within BACOVA_03151 at 239.846 kb on + strand, within BACOVA_03151 at 239.886 kb on + strand, within BACOVA_03151 at 240.024 kb on - strand, within BACOVA_03151 at 240.040 kb on - strand, within BACOVA_03151 at 240.044 kb on + strand, within BACOVA_03151 at 240.045 kb on - strand, within BACOVA_03151 at 240.045 kb on - strand, within BACOVA_03151 at 240.113 kb on - strand at 240.122 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C) remove 237,428 - -0.4 237,428 - -0.5 237,428 - +0.7 237,435 - -0.5 237,438 - -1.8 237,472 - +0.7 237,596 - BACOVA_03148 0.33 -1.4 237,635 - BACOVA_03148 0.42 +0.1 237,635 - BACOVA_03148 0.42 -0.9 237,686 - BACOVA_03148 0.53 -1.2 237,691 - BACOVA_03148 0.54 -1.5 237,877 - -1.6 237,900 - -1.5 237,902 - -1.4 237,938 - -0.5 237,938 - +1.3 237,957 + -0.6 237,990 + -2.3 237,991 - +2.3 237,993 + +0.9 237,994 - +0.4 238,003 - -0.7 238,022 + +1.9 238,022 + -1.2 238,023 - +0.4 238,023 - +1.7 238,024 + +0.2 238,024 + +0.2 238,024 + -2.6 238,025 - -2.1 238,027 + -1.9 238,058 - BACOVA_03149 0.15 +0.1 238,058 - BACOVA_03149 0.15 +1.1 238,085 + BACOVA_03149 0.23 +1.4 238,196 - BACOVA_03149 0.56 +0.4 238,219 + BACOVA_03149 0.63 +3.2 238,219 + BACOVA_03149 0.63 -0.1 238,220 - BACOVA_03149 0.64 +2.3 238,250 - BACOVA_03149 0.73 -0.1 238,282 + BACOVA_03149 0.82 -2.2 238,283 - BACOVA_03149 0.83 -0.6 238,283 - BACOVA_03149 0.83 -0.4 238,283 - BACOVA_03149 0.83 +0.6 238,285 - BACOVA_03149 0.83 +1.7 238,286 + BACOVA_03149 0.83 -1.4 238,286 + BACOVA_03149 0.83 +1.4 238,286 + BACOVA_03149 0.83 +0.6 238,286 + BACOVA_03149 0.83 +2.9 238,286 + BACOVA_03149 0.83 +2.7 238,287 - BACOVA_03149 0.84 -3.0 238,287 - BACOVA_03149 0.84 -0.2 238,287 - BACOVA_03149 0.84 -0.6 238,287 - BACOVA_03149 0.84 -0.8 238,287 - BACOVA_03149 0.84 -0.1 238,287 - BACOVA_03149 0.84 -1.5 238,287 - BACOVA_03149 0.84 -1.7 238,299 - BACOVA_03149 0.87 -0.4 238,306 + BACOVA_03149 0.89 -0.7 238,307 - -0.1 238,308 + +1.3 238,309 - +2.0 238,309 - +1.0 238,338 + -0.1 238,338 + -0.6 238,339 - -0.6 238,344 - -2.0 238,349 + +0.2 238,351 + -1.0 238,351 + -0.2 238,351 + +1.1 238,352 - -0.9 238,383 + +0.5 238,457 + +1.7 238,469 + BACOVA_03150 0.10 +2.8 238,469 + BACOVA_03150 0.10 -0.1 238,469 + BACOVA_03150 0.10 +0.1 238,485 - BACOVA_03150 0.12 -0.4 238,547 + BACOVA_03150 0.21 +1.5 238,548 - BACOVA_03150 0.21 +3.0 238,549 + BACOVA_03150 0.21 -1.6 238,582 + BACOVA_03150 0.25 -0.1 238,617 + BACOVA_03150 0.30 -0.6 238,626 + BACOVA_03150 0.31 -1.2 238,627 - BACOVA_03150 0.31 -1.1 238,628 + BACOVA_03150 0.31 +0.1 238,677 - BACOVA_03150 0.38 +0.2 238,691 + BACOVA_03150 0.40 +1.6 238,699 + BACOVA_03150 0.41 +0.6 238,699 + BACOVA_03150 0.41 -2.6 238,699 + BACOVA_03150 0.41 -0.8 238,700 - BACOVA_03150 0.41 -0.3 238,744 + BACOVA_03150 0.47 +1.1 238,744 + BACOVA_03150 0.47 -0.2 238,781 + BACOVA_03150 0.52 -0.3 238,782 - BACOVA_03150 0.52 +1.6 238,783 + BACOVA_03150 0.52 -1.4 238,813 + BACOVA_03150 0.56 +0.7 238,824 + BACOVA_03150 0.58 -1.7 238,825 - BACOVA_03150 0.58 -2.3 238,862 + BACOVA_03150 0.63 +2.2 238,863 - BACOVA_03150 0.63 -0.1 238,865 + BACOVA_03150 0.63 -0.6 238,866 - BACOVA_03150 0.64 +0.1 238,889 + BACOVA_03150 0.67 -1.1 238,890 - BACOVA_03150 0.67 -2.0 238,898 - BACOVA_03150 0.68 -0.7 238,898 - BACOVA_03150 0.68 +4.8 238,898 - BACOVA_03150 0.68 +0.7 238,930 + BACOVA_03150 0.72 -1.1 238,931 - BACOVA_03150 0.72 -1.1 238,941 + BACOVA_03150 0.74 -1.8 238,980 - BACOVA_03150 0.79 -1.2 238,980 - BACOVA_03150 0.79 +0.8 239,060 + BACOVA_03150 0.90 -2.5 239,066 + -1.1 239,066 + -1.4 239,087 + +0.9 239,139 - -0.8 239,155 + -1.4 239,155 + +0.4 239,162 + -3.0 239,162 + +2.2 239,166 + -0.7 239,166 + -0.4 239,167 - -0.3 239,167 - +1.4 239,167 - -0.4 239,167 - +1.6 239,167 - -0.6 239,224 + +1.8 239,262 - +1.3 239,285 + BACOVA_03151 0.11 -1.6 239,288 + BACOVA_03151 0.12 -0.1 239,361 + BACOVA_03151 0.19 -0.9 239,362 - BACOVA_03151 0.19 -2.2 239,362 - BACOVA_03151 0.19 +3.8 239,363 + BACOVA_03151 0.19 -1.2 239,364 - BACOVA_03151 0.19 -0.1 239,378 - BACOVA_03151 0.21 +0.4 239,392 + BACOVA_03151 0.22 -1.0 239,392 + BACOVA_03151 0.22 +0.8 239,412 + BACOVA_03151 0.24 -0.9 239,433 + BACOVA_03151 0.26 +0.8 239,434 - BACOVA_03151 0.26 -0.7 239,485 + BACOVA_03151 0.31 +3.9 239,490 - BACOVA_03151 0.32 -1.1 239,558 + BACOVA_03151 0.39 +0.1 239,568 + BACOVA_03151 0.40 -1.6 239,568 + BACOVA_03151 0.40 +1.1 239,599 + BACOVA_03151 0.43 -1.8 239,600 - BACOVA_03151 0.43 -0.4 239,632 + BACOVA_03151 0.46 +1.0 239,632 + BACOVA_03151 0.46 -0.5 239,632 + BACOVA_03151 0.46 +1.2 239,633 - BACOVA_03151 0.46 +0.8 239,634 + BACOVA_03151 0.46 -1.2 239,684 - BACOVA_03151 0.51 -0.2 239,775 - BACOVA_03151 0.60 +1.9 239,803 + BACOVA_03151 0.63 -0.1 239,846 + BACOVA_03151 0.67 -0.3 239,886 + BACOVA_03151 0.71 -0.8 240,024 - BACOVA_03151 0.85 -0.3 240,040 - BACOVA_03151 0.87 -1.2 240,044 + BACOVA_03151 0.87 +1.0 240,045 - BACOVA_03151 0.87 +4.6 240,045 - BACOVA_03151 0.87 +1.2 240,113 - +0.9 240,122 + +0.0
Or see this region's nucleotide sequence