Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02684

Experiment: amylopectin from maize 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02683 and BACOVA_02684 are separated by 68 nucleotidesBACOVA_02684 and BACOVA_02685 are separated by 30 nucleotides BACOVA_02683: BACOVA_02683 - hypothetical protein, at 88,581 to 89,588 _02683 BACOVA_02684: BACOVA_02684 - hypothetical protein, at 89,657 to 90,238 _02684 BACOVA_02685: BACOVA_02685 - hypothetical protein, at 90,269 to 92,146 _02685 Position (kb) 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 88.727 kb on + strand, within BACOVA_02683at 88.727 kb on + strand, within BACOVA_02683at 88.728 kb on - strand, within BACOVA_02683at 88.755 kb on + strand, within BACOVA_02683at 88.774 kb on - strand, within BACOVA_02683at 88.802 kb on + strand, within BACOVA_02683at 88.802 kb on + strand, within BACOVA_02683at 88.802 kb on + strand, within BACOVA_02683at 88.803 kb on - strand, within BACOVA_02683at 88.803 kb on - strand, within BACOVA_02683at 88.803 kb on - strand, within BACOVA_02683at 88.803 kb on - strand, within BACOVA_02683at 88.803 kb on - strand, within BACOVA_02683at 88.804 kb on + strand, within BACOVA_02683at 88.804 kb on + strand, within BACOVA_02683at 88.804 kb on + strand, within BACOVA_02683at 88.804 kb on + strand, within BACOVA_02683at 88.804 kb on + strand, within BACOVA_02683at 88.804 kb on + strand, within BACOVA_02683at 88.805 kb on - strand, within BACOVA_02683at 88.805 kb on - strand, within BACOVA_02683at 88.877 kb on - strand, within BACOVA_02683at 88.877 kb on - strand, within BACOVA_02683at 88.921 kb on + strand, within BACOVA_02683at 89.010 kb on + strand, within BACOVA_02683at 89.099 kb on + strand, within BACOVA_02683at 89.147 kb on + strand, within BACOVA_02683at 89.148 kb on - strand, within BACOVA_02683at 89.153 kb on + strand, within BACOVA_02683at 89.153 kb on + strand, within BACOVA_02683at 89.154 kb on - strand, within BACOVA_02683at 89.239 kb on + strand, within BACOVA_02683at 89.240 kb on - strand, within BACOVA_02683at 89.243 kb on + strand, within BACOVA_02683at 89.295 kb on + strand, within BACOVA_02683at 89.314 kb on + strand, within BACOVA_02683at 89.320 kb on + strand, within BACOVA_02683at 89.380 kb on - strand, within BACOVA_02683at 89.382 kb on - strand, within BACOVA_02683at 89.382 kb on - strand, within BACOVA_02683at 89.382 kb on - strand, within BACOVA_02683at 89.388 kb on + strand, within BACOVA_02683at 89.458 kb on + strand, within BACOVA_02683at 89.470 kb on + strand, within BACOVA_02683at 89.477 kb on + strand, within BACOVA_02683at 89.478 kb on - strand, within BACOVA_02683at 89.537 kb on + strandat 89.543 kb on + strandat 89.555 kb on + strandat 89.556 kb on - strandat 89.556 kb on - strandat 89.558 kb on - strandat 89.562 kb on + strandat 89.562 kb on + strandat 89.562 kb on + strandat 89.563 kb on - strandat 89.563 kb on - strandat 89.563 kb on - strandat 89.563 kb on - strandat 89.564 kb on + strandat 89.601 kb on + strandat 89.613 kb on + strandat 89.617 kb on - strandat 89.628 kb on + strandat 89.629 kb on - strandat 89.645 kb on + strandat 89.713 kb on - strandat 89.758 kb on + strand, within BACOVA_02684at 89.758 kb on + strand, within BACOVA_02684at 89.799 kb on + strand, within BACOVA_02684at 89.799 kb on + strand, within BACOVA_02684at 89.800 kb on - strand, within BACOVA_02684at 89.800 kb on - strand, within BACOVA_02684at 89.800 kb on - strand, within BACOVA_02684at 89.801 kb on + strand, within BACOVA_02684at 89.802 kb on - strand, within BACOVA_02684at 89.809 kb on - strand, within BACOVA_02684at 89.809 kb on - strand, within BACOVA_02684at 89.855 kb on - strand, within BACOVA_02684at 89.882 kb on - strand, within BACOVA_02684at 89.934 kb on + strand, within BACOVA_02684at 89.935 kb on - strand, within BACOVA_02684at 89.946 kb on + strand, within BACOVA_02684at 89.947 kb on - strand, within BACOVA_02684at 89.947 kb on - strand, within BACOVA_02684at 89.986 kb on + strand, within BACOVA_02684at 90.037 kb on + strand, within BACOVA_02684at 90.037 kb on + strand, within BACOVA_02684at 90.038 kb on - strand, within BACOVA_02684at 90.067 kb on + strand, within BACOVA_02684at 90.253 kb on - strandat 90.259 kb on - strandat 90.259 kb on - strandat 90.263 kb on + strandat 90.263 kb on + strandat 90.299 kb on - strandat 90.343 kb on + strandat 90.347 kb on + strandat 90.348 kb on - strandat 90.348 kb on - strandat 90.464 kb on + strand, within BACOVA_02685at 90.488 kb on + strand, within BACOVA_02685at 90.517 kb on + strand, within BACOVA_02685at 90.529 kb on + strand, within BACOVA_02685at 90.665 kb on - strand, within BACOVA_02685at 90.691 kb on - strand, within BACOVA_02685at 90.692 kb on + strand, within BACOVA_02685at 90.693 kb on - strand, within BACOVA_02685at 90.842 kb on + strand, within BACOVA_02685at 90.842 kb on + strand, within BACOVA_02685at 90.887 kb on - strand, within BACOVA_02685at 90.899 kb on + strand, within BACOVA_02685at 90.919 kb on + strand, within BACOVA_02685at 90.952 kb on + strand, within BACOVA_02685at 90.999 kb on + strand, within BACOVA_02685at 91.028 kb on - strand, within BACOVA_02685at 91.028 kb on - strand, within BACOVA_02685at 91.039 kb on + strand, within BACOVA_02685at 91.049 kb on - strand, within BACOVA_02685at 91.083 kb on - strand, within BACOVA_02685

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C)
remove
88,727 + BACOVA_02683 0.14 +0.8
88,727 + BACOVA_02683 0.14 -1.6
88,728 - BACOVA_02683 0.15 -2.2
88,755 + BACOVA_02683 0.17 +0.1
88,774 - BACOVA_02683 0.19 -0.1
88,802 + BACOVA_02683 0.22 +0.7
88,802 + BACOVA_02683 0.22 +1.0
88,802 + BACOVA_02683 0.22 -0.8
88,803 - BACOVA_02683 0.22 -2.0
88,803 - BACOVA_02683 0.22 -1.5
88,803 - BACOVA_02683 0.22 -1.1
88,803 - BACOVA_02683 0.22 +0.4
88,803 - BACOVA_02683 0.22 +0.5
88,804 + BACOVA_02683 0.22 -1.9
88,804 + BACOVA_02683 0.22 -1.6
88,804 + BACOVA_02683 0.22 +0.0
88,804 + BACOVA_02683 0.22 -1.6
88,804 + BACOVA_02683 0.22 +0.3
88,804 + BACOVA_02683 0.22 -1.1
88,805 - BACOVA_02683 0.22 -1.9
88,805 - BACOVA_02683 0.22 -1.7
88,877 - BACOVA_02683 0.29 +1.0
88,877 - BACOVA_02683 0.29 -3.0
88,921 + BACOVA_02683 0.34 +1.6
89,010 + BACOVA_02683 0.43 +1.4
89,099 + BACOVA_02683 0.51 +0.3
89,147 + BACOVA_02683 0.56 -0.2
89,148 - BACOVA_02683 0.56 -1.3
89,153 + BACOVA_02683 0.57 +0.8
89,153 + BACOVA_02683 0.57 -0.6
89,154 - BACOVA_02683 0.57 -0.5
89,239 + BACOVA_02683 0.65 +0.4
89,240 - BACOVA_02683 0.65 -1.4
89,243 + BACOVA_02683 0.66 -0.6
89,295 + BACOVA_02683 0.71 -0.5
89,314 + BACOVA_02683 0.73 +0.7
89,320 + BACOVA_02683 0.73 -1.1
89,380 - BACOVA_02683 0.79 -1.2
89,382 - BACOVA_02683 0.79 -1.4
89,382 - BACOVA_02683 0.79 -0.7
89,382 - BACOVA_02683 0.79 -1.7
89,388 + BACOVA_02683 0.80 +0.5
89,458 + BACOVA_02683 0.87 +0.8
89,470 + BACOVA_02683 0.88 -1.4
89,477 + BACOVA_02683 0.89 -0.5
89,478 - BACOVA_02683 0.89 -1.4
89,537 + -1.4
89,543 + +0.2
89,555 + -0.1
89,556 - +1.5
89,556 - +1.2
89,558 - +0.2
89,562 + +1.7
89,562 + +0.1
89,562 + +0.3
89,563 - -2.8
89,563 - -0.2
89,563 - +1.4
89,563 - +1.2
89,564 + +2.2
89,601 + +1.5
89,613 + -0.2
89,617 - -0.2
89,628 + +2.9
89,629 - -0.5
89,645 + -0.3
89,713 - -1.9
89,758 + BACOVA_02684 0.17 -0.3
89,758 + BACOVA_02684 0.17 -0.9
89,799 + BACOVA_02684 0.24 +2.0
89,799 + BACOVA_02684 0.24 -3.1
89,800 - BACOVA_02684 0.25 -0.6
89,800 - BACOVA_02684 0.25 +1.3
89,800 - BACOVA_02684 0.25 +0.2
89,801 + BACOVA_02684 0.25 -0.8
89,802 - BACOVA_02684 0.25 -0.1
89,809 - BACOVA_02684 0.26 +0.5
89,809 - BACOVA_02684 0.26 -0.9
89,855 - BACOVA_02684 0.34 -2.1
89,882 - BACOVA_02684 0.39 +0.8
89,934 + BACOVA_02684 0.48 +1.2
89,935 - BACOVA_02684 0.48 -0.2
89,946 + BACOVA_02684 0.50 -3.2
89,947 - BACOVA_02684 0.50 -0.9
89,947 - BACOVA_02684 0.50 -1.5
89,986 + BACOVA_02684 0.57 -1.0
90,037 + BACOVA_02684 0.65 -1.2
90,037 + BACOVA_02684 0.65 -1.4
90,038 - BACOVA_02684 0.65 -2.7
90,067 + BACOVA_02684 0.70 -2.3
90,253 - -1.4
90,259 - -2.6
90,259 - -2.2
90,263 + +0.5
90,263 + +2.2
90,299 - -0.7
90,343 + -2.6
90,347 + -0.2
90,348 - -0.8
90,348 - +2.0
90,464 + BACOVA_02685 0.10 -0.2
90,488 + BACOVA_02685 0.12 +2.1
90,517 + BACOVA_02685 0.13 -0.7
90,529 + BACOVA_02685 0.14 +1.1
90,665 - BACOVA_02685 0.21 +1.3
90,691 - BACOVA_02685 0.22 -0.6
90,692 + BACOVA_02685 0.23 -0.5
90,693 - BACOVA_02685 0.23 -1.0
90,842 + BACOVA_02685 0.31 -0.6
90,842 + BACOVA_02685 0.31 -0.7
90,887 - BACOVA_02685 0.33 -1.7
90,899 + BACOVA_02685 0.34 -0.8
90,919 + BACOVA_02685 0.35 +2.2
90,952 + BACOVA_02685 0.36 -1.3
90,999 + BACOVA_02685 0.39 +0.4
91,028 - BACOVA_02685 0.40 +0.1
91,028 - BACOVA_02685 0.40 -2.1
91,039 + BACOVA_02685 0.41 +1.1
91,049 - BACOVA_02685 0.42 -0.9
91,083 - BACOVA_02685 0.43 -0.4

Or see this region's nucleotide sequence