Experiment: amylopectin from maize 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02585 and BACOVA_02586 are separated by 28 nucleotides BACOVA_02586 and BACOVA_02587 are separated by 27 nucleotides
BACOVA_02585: BACOVA_02585 - efflux ABC transporter, permease protein, at 352,256 to 354,652
_02585
BACOVA_02586: BACOVA_02586 - putative bacteriocin export ABC transporter, lactococcin 972 group, at 354,681 to 355,355
_02586
BACOVA_02587: BACOVA_02587 - efflux ABC transporter, permease protein, at 355,383 to 357,704
_02587
Position (kb) 354
355
356 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 353.782 kb on + strand, within BACOVA_02585 at 353.784 kb on + strand, within BACOVA_02585 at 353.784 kb on + strand, within BACOVA_02585 at 353.785 kb on - strand, within BACOVA_02585 at 353.785 kb on - strand, within BACOVA_02585 at 353.789 kb on + strand, within BACOVA_02585 at 353.789 kb on + strand, within BACOVA_02585 at 353.790 kb on - strand, within BACOVA_02585 at 353.790 kb on - strand, within BACOVA_02585 at 353.803 kb on - strand, within BACOVA_02585 at 353.817 kb on + strand, within BACOVA_02585 at 353.858 kb on - strand, within BACOVA_02585 at 353.858 kb on - strand, within BACOVA_02585 at 353.863 kb on - strand, within BACOVA_02585 at 353.863 kb on - strand, within BACOVA_02585 at 353.981 kb on + strand, within BACOVA_02585 at 353.984 kb on - strand, within BACOVA_02585 at 353.984 kb on - strand, within BACOVA_02585 at 354.060 kb on + strand, within BACOVA_02585 at 354.060 kb on + strand, within BACOVA_02585 at 354.061 kb on - strand, within BACOVA_02585 at 354.061 kb on - strand, within BACOVA_02585 at 354.061 kb on - strand, within BACOVA_02585 at 354.110 kb on + strand, within BACOVA_02585 at 354.114 kb on + strand, within BACOVA_02585 at 354.206 kb on - strand, within BACOVA_02585 at 354.219 kb on + strand, within BACOVA_02585 at 354.242 kb on + strand, within BACOVA_02585 at 354.242 kb on + strand, within BACOVA_02585 at 354.264 kb on - strand, within BACOVA_02585 at 354.266 kb on - strand, within BACOVA_02585 at 354.330 kb on - strand, within BACOVA_02585 at 354.402 kb on + strand, within BACOVA_02585 at 354.513 kb on - strand at 354.513 kb on - strand at 354.574 kb on - strand at 354.574 kb on - strand at 354.592 kb on + strand at 354.599 kb on - strand at 354.637 kb on - strand at 354.674 kb on + strand at 354.680 kb on + strand at 354.687 kb on - strand at 354.687 kb on - strand at 354.912 kb on - strand, within BACOVA_02586 at 355.008 kb on + strand, within BACOVA_02586 at 355.011 kb on - strand, within BACOVA_02586 at 355.017 kb on - strand, within BACOVA_02586 at 355.055 kb on + strand, within BACOVA_02586 at 355.055 kb on + strand, within BACOVA_02586 at 355.346 kb on + strand at 355.349 kb on + strand at 355.365 kb on - strand at 355.379 kb on + strand at 355.423 kb on + strand at 355.423 kb on + strand at 355.424 kb on - strand at 355.428 kb on + strand at 355.448 kb on + strand at 355.449 kb on - strand at 355.449 kb on - strand at 355.449 kb on - strand at 355.451 kb on + strand at 355.452 kb on - strand at 355.495 kb on + strand at 355.522 kb on - strand at 355.555 kb on - strand at 355.601 kb on + strand at 355.627 kb on - strand, within BACOVA_02587 at 355.660 kb on + strand, within BACOVA_02587 at 355.739 kb on - strand, within BACOVA_02587 at 355.739 kb on - strand, within BACOVA_02587 at 355.774 kb on + strand, within BACOVA_02587 at 355.821 kb on - strand, within BACOVA_02587 at 355.871 kb on + strand, within BACOVA_02587 at 355.895 kb on + strand, within BACOVA_02587 at 355.924 kb on + strand, within BACOVA_02587 at 355.925 kb on - strand, within BACOVA_02587 at 355.961 kb on + strand, within BACOVA_02587 at 355.961 kb on + strand, within BACOVA_02587 at 355.963 kb on + strand, within BACOVA_02587 at 355.963 kb on + strand, within BACOVA_02587 at 355.964 kb on - strand, within BACOVA_02587 at 355.964 kb on - strand, within BACOVA_02587 at 355.983 kb on - strand, within BACOVA_02587 at 355.983 kb on - strand, within BACOVA_02587 at 356.027 kb on + strand, within BACOVA_02587 at 356.045 kb on + strand, within BACOVA_02587 at 356.046 kb on - strand, within BACOVA_02587 at 356.048 kb on - strand, within BACOVA_02587 at 356.048 kb on - strand, within BACOVA_02587 at 356.048 kb on - strand, within BACOVA_02587 at 356.099 kb on + strand, within BACOVA_02587 at 356.100 kb on - strand, within BACOVA_02587 at 356.187 kb on - strand, within BACOVA_02587 at 356.205 kb on - strand, within BACOVA_02587 at 356.205 kb on - strand, within BACOVA_02587 at 356.205 kb on - strand, within BACOVA_02587 at 356.233 kb on + strand, within BACOVA_02587 at 356.246 kb on - strand, within BACOVA_02587 at 356.343 kb on - strand, within BACOVA_02587
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C) remove 353,782 + BACOVA_02585 0.64 -0.5 353,784 + BACOVA_02585 0.64 -0.5 353,784 + BACOVA_02585 0.64 -1.2 353,785 - BACOVA_02585 0.64 -0.3 353,785 - BACOVA_02585 0.64 +1.0 353,789 + BACOVA_02585 0.64 -1.7 353,789 + BACOVA_02585 0.64 -1.0 353,790 - BACOVA_02585 0.64 +0.3 353,790 - BACOVA_02585 0.64 -2.1 353,803 - BACOVA_02585 0.65 -0.6 353,817 + BACOVA_02585 0.65 -0.3 353,858 - BACOVA_02585 0.67 +2.5 353,858 - BACOVA_02585 0.67 +0.3 353,863 - BACOVA_02585 0.67 -1.5 353,863 - BACOVA_02585 0.67 -3.0 353,981 + BACOVA_02585 0.72 -0.4 353,984 - BACOVA_02585 0.72 -1.2 353,984 - BACOVA_02585 0.72 -0.2 354,060 + BACOVA_02585 0.75 -0.3 354,060 + BACOVA_02585 0.75 -3.7 354,061 - BACOVA_02585 0.75 +0.2 354,061 - BACOVA_02585 0.75 -3.4 354,061 - BACOVA_02585 0.75 +1.2 354,110 + BACOVA_02585 0.77 +1.5 354,114 + BACOVA_02585 0.78 -0.5 354,206 - BACOVA_02585 0.81 -1.4 354,219 + BACOVA_02585 0.82 -1.5 354,242 + BACOVA_02585 0.83 -1.2 354,242 + BACOVA_02585 0.83 -4.0 354,264 - BACOVA_02585 0.84 +0.1 354,266 - BACOVA_02585 0.84 +0.6 354,330 - BACOVA_02585 0.87 -0.3 354,402 + BACOVA_02585 0.90 -0.9 354,513 - +2.3 354,513 - -1.5 354,574 - +0.5 354,574 - +1.3 354,592 + -0.9 354,599 - +1.4 354,637 - -0.3 354,674 + +0.9 354,680 + +2.9 354,687 - +1.0 354,687 - -2.5 354,912 - BACOVA_02586 0.34 -0.3 355,008 + BACOVA_02586 0.48 -0.5 355,011 - BACOVA_02586 0.49 +1.1 355,017 - BACOVA_02586 0.50 -0.6 355,055 + BACOVA_02586 0.55 +1.0 355,055 + BACOVA_02586 0.55 -0.4 355,346 + -1.7 355,349 + +0.5 355,365 - +0.2 355,379 + -0.5 355,423 + -1.0 355,423 + +0.4 355,424 - -2.9 355,428 + -1.8 355,448 + +0.9 355,449 - +0.5 355,449 - -0.3 355,449 - -2.5 355,451 + -1.6 355,452 - -0.5 355,495 + -0.5 355,522 - -0.0 355,555 - -0.5 355,601 + -2.0 355,627 - BACOVA_02587 0.11 -1.2 355,660 + BACOVA_02587 0.12 -1.9 355,739 - BACOVA_02587 0.15 -1.5 355,739 - BACOVA_02587 0.15 -0.4 355,774 + BACOVA_02587 0.17 -2.2 355,821 - BACOVA_02587 0.19 +0.2 355,871 + BACOVA_02587 0.21 +0.7 355,895 + BACOVA_02587 0.22 -1.0 355,924 + BACOVA_02587 0.23 -1.0 355,925 - BACOVA_02587 0.23 -0.3 355,961 + BACOVA_02587 0.25 -0.3 355,961 + BACOVA_02587 0.25 -1.3 355,963 + BACOVA_02587 0.25 -0.9 355,963 + BACOVA_02587 0.25 +3.1 355,964 - BACOVA_02587 0.25 -1.2 355,964 - BACOVA_02587 0.25 -0.4 355,983 - BACOVA_02587 0.26 -1.7 355,983 - BACOVA_02587 0.26 -1.5 356,027 + BACOVA_02587 0.28 +0.5 356,045 + BACOVA_02587 0.29 +1.0 356,046 - BACOVA_02587 0.29 +0.2 356,048 - BACOVA_02587 0.29 +0.1 356,048 - BACOVA_02587 0.29 -0.7 356,048 - BACOVA_02587 0.29 +1.1 356,099 + BACOVA_02587 0.31 -1.0 356,100 - BACOVA_02587 0.31 -1.4 356,187 - BACOVA_02587 0.35 -0.1 356,205 - BACOVA_02587 0.35 -0.8 356,205 - BACOVA_02587 0.35 -2.9 356,205 - BACOVA_02587 0.35 -2.7 356,233 + BACOVA_02587 0.37 +1.3 356,246 - BACOVA_02587 0.37 -2.3 356,343 - BACOVA_02587 0.41 +0.4
Or see this region's nucleotide sequence