Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02458

Experiment: amylopectin from maize 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02456 and BACOVA_02457 are separated by 51 nucleotidesBACOVA_02457 and BACOVA_02458 are separated by 80 nucleotidesBACOVA_02458 and BACOVA_02459 overlap by 22 nucleotidesBACOVA_02459 and BACOVA_02460 overlap by 4 nucleotides BACOVA_02456: BACOVA_02456 - hypothetical protein, at 218,981 to 219,121 _02456 BACOVA_02457: BACOVA_02457 - transcription termination/antitermination factor NusG, at 219,173 to 219,748 _02457 BACOVA_02458: BACOVA_02458 - polysaccharide biosynthesis protein, at 219,829 to 221,364 _02458 BACOVA_02459: BACOVA_02459 - acyltransferase, at 221,343 to 222,335 _02459 BACOVA_02460: BACOVA_02460 - 4Fe-4S binding domain protein, at 222,332 to 223,480 _02460 Position (kb) 219 220 221 222Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 219.597 kb on + strand, within BACOVA_02457at 219.630 kb on + strand, within BACOVA_02457at 219.644 kb on - strand, within BACOVA_02457at 219.644 kb on - strand, within BACOVA_02457at 219.648 kb on + strand, within BACOVA_02457at 219.648 kb on + strand, within BACOVA_02457at 219.648 kb on + strand, within BACOVA_02457at 219.655 kb on + strand, within BACOVA_02457at 219.662 kb on - strand, within BACOVA_02457at 219.683 kb on - strand, within BACOVA_02457at 219.719 kb on + strandat 219.768 kb on + strandat 219.768 kb on + strandat 219.769 kb on - strandat 219.776 kb on - strandat 219.776 kb on - strandat 219.776 kb on - strandat 219.803 kb on - strandat 219.807 kb on + strandat 219.807 kb on + strandat 219.808 kb on - strandat 219.808 kb on - strandat 219.814 kb on - strandat 219.814 kb on - strandat 219.815 kb on + strandat 219.816 kb on - strandat 219.870 kb on + strandat 219.891 kb on + strandat 219.892 kb on - strandat 219.917 kb on + strandat 219.918 kb on - strandat 219.920 kb on - strandat 219.922 kb on - strandat 219.936 kb on - strandat 219.939 kb on - strandat 219.969 kb on - strandat 219.971 kb on - strandat 219.971 kb on - strandat 219.971 kb on - strandat 219.971 kb on - strandat 219.971 kb on - strandat 219.973 kb on - strandat 219.981 kb on - strandat 219.981 kb on - strandat 219.981 kb on - strandat 219.993 kb on - strand, within BACOVA_02458at 220.119 kb on - strand, within BACOVA_02458at 220.137 kb on - strand, within BACOVA_02458at 220.146 kb on - strand, within BACOVA_02458at 220.189 kb on - strand, within BACOVA_02458at 220.275 kb on + strand, within BACOVA_02458at 220.285 kb on - strand, within BACOVA_02458at 220.290 kb on - strand, within BACOVA_02458at 220.319 kb on - strand, within BACOVA_02458at 220.319 kb on - strand, within BACOVA_02458at 220.320 kb on + strand, within BACOVA_02458at 220.321 kb on - strand, within BACOVA_02458at 220.321 kb on - strand, within BACOVA_02458at 220.327 kb on - strand, within BACOVA_02458at 220.327 kb on - strand, within BACOVA_02458at 220.328 kb on + strand, within BACOVA_02458at 220.339 kb on - strand, within BACOVA_02458at 220.339 kb on - strand, within BACOVA_02458at 220.350 kb on + strand, within BACOVA_02458at 220.351 kb on - strand, within BACOVA_02458at 220.354 kb on - strand, within BACOVA_02458at 220.374 kb on - strand, within BACOVA_02458at 220.380 kb on + strand, within BACOVA_02458at 220.422 kb on - strand, within BACOVA_02458at 220.422 kb on - strand, within BACOVA_02458at 220.441 kb on - strand, within BACOVA_02458at 220.441 kb on - strand, within BACOVA_02458at 220.445 kb on - strand, within BACOVA_02458at 220.454 kb on - strand, within BACOVA_02458at 220.620 kb on - strand, within BACOVA_02458at 220.642 kb on - strand, within BACOVA_02458at 220.642 kb on - strand, within BACOVA_02458at 220.642 kb on - strand, within BACOVA_02458at 220.695 kb on - strand, within BACOVA_02458at 220.781 kb on - strand, within BACOVA_02458at 220.782 kb on + strand, within BACOVA_02458at 220.783 kb on - strand, within BACOVA_02458at 220.826 kb on - strand, within BACOVA_02458at 220.828 kb on - strand, within BACOVA_02458at 220.839 kb on - strand, within BACOVA_02458at 220.929 kb on + strand, within BACOVA_02458at 220.951 kb on - strand, within BACOVA_02458at 221.007 kb on - strand, within BACOVA_02458at 221.007 kb on - strand, within BACOVA_02458at 221.007 kb on - strand, within BACOVA_02458at 221.007 kb on - strand, within BACOVA_02458at 221.011 kb on + strand, within BACOVA_02458at 221.012 kb on - strand, within BACOVA_02458at 221.012 kb on - strand, within BACOVA_02458at 221.014 kb on - strand, within BACOVA_02458at 221.049 kb on - strand, within BACOVA_02458at 221.064 kb on - strand, within BACOVA_02458at 221.068 kb on - strand, within BACOVA_02458at 221.099 kb on - strand, within BACOVA_02458at 221.099 kb on - strand, within BACOVA_02458at 221.193 kb on - strand, within BACOVA_02458at 221.241 kb on - strandat 221.253 kb on - strandat 221.266 kb on - strandat 221.372 kb on + strandat 221.372 kb on + strandat 221.383 kb on + strandat 221.388 kb on - strandat 221.399 kb on + strandat 221.420 kb on - strandat 221.440 kb on + strandat 221.441 kb on - strandat 221.442 kb on + strandat 221.442 kb on + strandat 221.443 kb on - strand, within BACOVA_02459at 221.443 kb on - strand, within BACOVA_02459at 221.449 kb on + strand, within BACOVA_02459at 221.505 kb on + strand, within BACOVA_02459at 221.530 kb on + strand, within BACOVA_02459at 221.531 kb on - strand, within BACOVA_02459at 221.546 kb on - strand, within BACOVA_02459at 221.556 kb on - strand, within BACOVA_02459at 221.589 kb on - strand, within BACOVA_02459at 221.589 kb on - strand, within BACOVA_02459at 221.609 kb on + strand, within BACOVA_02459at 221.610 kb on - strand, within BACOVA_02459at 221.610 kb on - strand, within BACOVA_02459at 221.626 kb on + strand, within BACOVA_02459at 221.627 kb on - strand, within BACOVA_02459at 221.627 kb on - strand, within BACOVA_02459at 221.644 kb on - strand, within BACOVA_02459at 221.644 kb on - strand, within BACOVA_02459at 221.644 kb on - strand, within BACOVA_02459at 221.644 kb on - strand, within BACOVA_02459at 221.685 kb on - strand, within BACOVA_02459at 221.715 kb on + strand, within BACOVA_02459at 221.731 kb on + strand, within BACOVA_02459at 221.731 kb on + strand, within BACOVA_02459at 221.740 kb on + strand, within BACOVA_02459at 221.759 kb on - strand, within BACOVA_02459at 221.767 kb on - strand, within BACOVA_02459

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C)
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219,597 + BACOVA_02457 0.74 -2.0
219,630 + BACOVA_02457 0.79 +0.2
219,644 - BACOVA_02457 0.82 -0.9
219,644 - BACOVA_02457 0.82 +1.8
219,648 + BACOVA_02457 0.82 -1.8
219,648 + BACOVA_02457 0.82 +1.8
219,648 + BACOVA_02457 0.82 -0.2
219,655 + BACOVA_02457 0.84 -1.2
219,662 - BACOVA_02457 0.85 -0.2
219,683 - BACOVA_02457 0.89 +2.8
219,719 + -1.9
219,768 + -2.6
219,768 + -1.2
219,769 - +2.7
219,776 - +1.7
219,776 - -1.1
219,776 - +1.8
219,803 - +0.6
219,807 + -0.6
219,807 + -1.7
219,808 - -0.0
219,808 - -1.0
219,814 - +3.6
219,814 - -1.5
219,815 + -0.8
219,816 - +1.8
219,870 + -0.9
219,891 + -1.0
219,892 - +1.1
219,917 + +0.2
219,918 - +4.2
219,920 - +0.6
219,922 - +2.6
219,936 - +1.6
219,939 - -2.0
219,969 - +1.7
219,971 - +2.7
219,971 - -0.9
219,971 - +1.4
219,971 - +2.8
219,971 - +2.5
219,973 - +1.1
219,981 - +1.0
219,981 - +2.6
219,981 - +1.6
219,993 - BACOVA_02458 0.11 +2.5
220,119 - BACOVA_02458 0.19 +0.0
220,137 - BACOVA_02458 0.20 +3.8
220,146 - BACOVA_02458 0.21 +1.0
220,189 - BACOVA_02458 0.23 +0.6
220,275 + BACOVA_02458 0.29 +0.9
220,285 - BACOVA_02458 0.30 -2.5
220,290 - BACOVA_02458 0.30 +2.9
220,319 - BACOVA_02458 0.32 +2.3
220,319 - BACOVA_02458 0.32 +2.1
220,320 + BACOVA_02458 0.32 -1.8
220,321 - BACOVA_02458 0.32 +1.0
220,321 - BACOVA_02458 0.32 +1.7
220,327 - BACOVA_02458 0.32 +3.5
220,327 - BACOVA_02458 0.32 +2.9
220,328 + BACOVA_02458 0.32 -1.8
220,339 - BACOVA_02458 0.33 +2.9
220,339 - BACOVA_02458 0.33 +1.6
220,350 + BACOVA_02458 0.34 +1.9
220,351 - BACOVA_02458 0.34 +1.1
220,354 - BACOVA_02458 0.34 +3.5
220,374 - BACOVA_02458 0.35 +2.1
220,380 + BACOVA_02458 0.36 +1.2
220,422 - BACOVA_02458 0.39 +2.3
220,422 - BACOVA_02458 0.39 +3.6
220,441 - BACOVA_02458 0.40 -2.2
220,441 - BACOVA_02458 0.40 -0.8
220,445 - BACOVA_02458 0.40 -0.8
220,454 - BACOVA_02458 0.41 +0.4
220,620 - BACOVA_02458 0.51 +0.0
220,642 - BACOVA_02458 0.53 +0.5
220,642 - BACOVA_02458 0.53 +0.2
220,642 - BACOVA_02458 0.53 -2.2
220,695 - BACOVA_02458 0.56 +0.5
220,781 - BACOVA_02458 0.62 -0.8
220,782 + BACOVA_02458 0.62 -1.1
220,783 - BACOVA_02458 0.62 -1.6
220,826 - BACOVA_02458 0.65 +1.7
220,828 - BACOVA_02458 0.65 -0.6
220,839 - BACOVA_02458 0.66 +2.2
220,929 + BACOVA_02458 0.72 +0.7
220,951 - BACOVA_02458 0.73 -0.4
221,007 - BACOVA_02458 0.77 +3.3
221,007 - BACOVA_02458 0.77 +1.9
221,007 - BACOVA_02458 0.77 +3.4
221,007 - BACOVA_02458 0.77 +2.8
221,011 + BACOVA_02458 0.77 +0.8
221,012 - BACOVA_02458 0.77 -1.7
221,012 - BACOVA_02458 0.77 +2.7
221,014 - BACOVA_02458 0.77 +1.3
221,049 - BACOVA_02458 0.79 +2.5
221,064 - BACOVA_02458 0.80 +2.4
221,068 - BACOVA_02458 0.81 -2.5
221,099 - BACOVA_02458 0.83 +3.4
221,099 - BACOVA_02458 0.83 -1.1
221,193 - BACOVA_02458 0.89 +1.4
221,241 - +1.4
221,253 - +1.9
221,266 - -0.4
221,372 + -2.0
221,372 + -1.6
221,383 + +3.0
221,388 - +3.0
221,399 + +2.0
221,420 - +3.7
221,440 + +4.1
221,441 - +0.5
221,442 + +0.4
221,442 + -1.6
221,443 - BACOVA_02459 0.10 -3.8
221,443 - BACOVA_02459 0.10 +1.2
221,449 + BACOVA_02459 0.11 +1.3
221,505 + BACOVA_02459 0.16 +1.4
221,530 + BACOVA_02459 0.19 -0.2
221,531 - BACOVA_02459 0.19 -1.2
221,546 - BACOVA_02459 0.20 -1.0
221,556 - BACOVA_02459 0.21 +0.9
221,589 - BACOVA_02459 0.25 +0.5
221,589 - BACOVA_02459 0.25 +2.0
221,609 + BACOVA_02459 0.27 +1.0
221,610 - BACOVA_02459 0.27 +2.4
221,610 - BACOVA_02459 0.27 +0.9
221,626 + BACOVA_02459 0.28 -2.6
221,627 - BACOVA_02459 0.29 -0.7
221,627 - BACOVA_02459 0.29 +1.7
221,644 - BACOVA_02459 0.30 +2.7
221,644 - BACOVA_02459 0.30 -1.1
221,644 - BACOVA_02459 0.30 +2.6
221,644 - BACOVA_02459 0.30 +2.1
221,685 - BACOVA_02459 0.34 +3.9
221,715 + BACOVA_02459 0.37 -2.0
221,731 + BACOVA_02459 0.39 -1.3
221,731 + BACOVA_02459 0.39 +0.5
221,740 + BACOVA_02459 0.40 +1.4
221,759 - BACOVA_02459 0.42 -2.4
221,767 - BACOVA_02459 0.43 -0.5

Or see this region's nucleotide sequence