Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02294

Experiment: amylopectin from maize 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02293 and BACOVA_02294 overlap by 4 nucleotidesBACOVA_02294 and BACOVA_02295 are separated by 76 nucleotidesBACOVA_02295 and BACOVA_02296 are separated by 109 nucleotides BACOVA_02293: BACOVA_02293 - hypothetical protein, at 64,235 to 64,834 _02293 BACOVA_02294: BACOVA_02294 - hypothetical protein, at 64,831 to 65,604 _02294 BACOVA_02295: BACOVA_02295 - hypothetical protein, at 65,681 to 65,809 _02295 BACOVA_02296: BACOVA_02296 - hypothetical protein, at 65,919 to 67,463 _02296 Position (kb) 64 65 66Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 63.879 kb on + strandat 63.894 kb on - strandat 63.937 kb on + strandat 63.938 kb on - strandat 63.938 kb on - strandat 63.941 kb on + strandat 63.965 kb on + strandat 63.980 kb on + strandat 63.980 kb on + strandat 64.022 kb on - strandat 64.143 kb on - strandat 64.159 kb on - strandat 64.231 kb on + strandat 64.235 kb on - strandat 64.235 kb on - strandat 64.266 kb on + strandat 64.266 kb on + strandat 64.288 kb on + strandat 64.309 kb on + strand, within BACOVA_02293at 64.321 kb on - strand, within BACOVA_02293at 64.355 kb on - strand, within BACOVA_02293at 64.378 kb on - strand, within BACOVA_02293at 64.378 kb on - strand, within BACOVA_02293at 64.381 kb on + strand, within BACOVA_02293at 64.382 kb on - strand, within BACOVA_02293at 64.383 kb on + strand, within BACOVA_02293at 64.450 kb on + strand, within BACOVA_02293at 64.490 kb on + strand, within BACOVA_02293at 64.490 kb on + strand, within BACOVA_02293at 64.491 kb on - strand, within BACOVA_02293at 64.528 kb on + strand, within BACOVA_02293at 64.528 kb on + strand, within BACOVA_02293at 64.529 kb on - strand, within BACOVA_02293at 64.608 kb on - strand, within BACOVA_02293at 64.612 kb on + strand, within BACOVA_02293at 64.648 kb on + strand, within BACOVA_02293at 64.648 kb on + strand, within BACOVA_02293at 64.651 kb on + strand, within BACOVA_02293at 64.651 kb on + strand, within BACOVA_02293at 64.734 kb on + strand, within BACOVA_02293at 64.811 kb on + strandat 64.812 kb on - strandat 64.814 kb on - strandat 64.816 kb on - strandat 64.816 kb on - strandat 64.970 kb on + strand, within BACOVA_02294at 64.994 kb on + strand, within BACOVA_02294at 65.001 kb on + strand, within BACOVA_02294at 65.001 kb on + strand, within BACOVA_02294at 65.002 kb on - strand, within BACOVA_02294at 65.002 kb on - strand, within BACOVA_02294at 65.005 kb on + strand, within BACOVA_02294at 65.005 kb on + strand, within BACOVA_02294at 65.006 kb on - strand, within BACOVA_02294at 65.006 kb on - strand, within BACOVA_02294at 65.006 kb on - strand, within BACOVA_02294at 65.031 kb on + strand, within BACOVA_02294at 65.052 kb on + strand, within BACOVA_02294at 65.052 kb on + strand, within BACOVA_02294at 65.086 kb on - strand, within BACOVA_02294at 65.133 kb on + strand, within BACOVA_02294at 65.146 kb on + strand, within BACOVA_02294at 65.201 kb on - strand, within BACOVA_02294at 65.201 kb on - strand, within BACOVA_02294at 65.205 kb on + strand, within BACOVA_02294at 65.205 kb on + strand, within BACOVA_02294at 65.244 kb on - strand, within BACOVA_02294at 65.256 kb on + strand, within BACOVA_02294at 65.321 kb on + strand, within BACOVA_02294at 65.325 kb on + strand, within BACOVA_02294at 65.325 kb on + strand, within BACOVA_02294at 65.326 kb on - strand, within BACOVA_02294at 65.336 kb on + strand, within BACOVA_02294at 65.336 kb on + strand, within BACOVA_02294at 65.337 kb on - strand, within BACOVA_02294at 65.347 kb on - strand, within BACOVA_02294at 65.347 kb on - strand, within BACOVA_02294at 65.365 kb on - strand, within BACOVA_02294at 65.385 kb on + strand, within BACOVA_02294at 65.429 kb on + strand, within BACOVA_02294at 65.467 kb on - strand, within BACOVA_02294at 65.469 kb on + strand, within BACOVA_02294at 65.470 kb on - strand, within BACOVA_02294at 65.483 kb on + strand, within BACOVA_02294at 65.490 kb on + strand, within BACOVA_02294at 65.490 kb on + strand, within BACOVA_02294at 65.545 kb on - strandat 65.578 kb on + strandat 65.592 kb on + strandat 65.593 kb on - strandat 65.594 kb on + strandat 65.594 kb on + strandat 65.597 kb on + strandat 65.606 kb on - strandat 65.628 kb on + strandat 65.629 kb on - strandat 65.683 kb on - strandat 65.704 kb on + strand, within BACOVA_02295at 65.705 kb on - strand, within BACOVA_02295at 65.996 kb on + strandat 66.010 kb on - strandat 66.010 kb on - strandat 66.010 kb on - strandat 66.021 kb on + strandat 66.021 kb on + strandat 66.021 kb on + strandat 66.022 kb on - strandat 66.022 kb on - strandat 66.022 kb on - strandat 66.030 kb on + strandat 66.084 kb on + strand, within BACOVA_02296at 66.085 kb on - strand, within BACOVA_02296at 66.141 kb on + strand, within BACOVA_02296at 66.142 kb on - strand, within BACOVA_02296at 66.142 kb on - strand, within BACOVA_02296at 66.142 kb on - strand, within BACOVA_02296at 66.142 kb on - strand, within BACOVA_02296at 66.207 kb on + strand, within BACOVA_02296at 66.304 kb on - strand, within BACOVA_02296at 66.514 kb on - strand, within BACOVA_02296at 66.528 kb on + strand, within BACOVA_02296at 66.529 kb on - strand, within BACOVA_02296at 66.541 kb on + strand, within BACOVA_02296at 66.542 kb on - strand, within BACOVA_02296at 66.542 kb on - strand, within BACOVA_02296at 66.546 kb on - strand, within BACOVA_02296at 66.572 kb on + strand, within BACOVA_02296

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C)
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63,879 + -2.4
63,894 - -1.9
63,937 + +2.1
63,938 - -0.6
63,938 - +0.9
63,941 + +1.4
63,965 + -1.1
63,980 + -0.3
63,980 + -0.0
64,022 - -0.2
64,143 - +0.1
64,159 - +1.5
64,231 + -0.5
64,235 - -1.2
64,235 - -1.7
64,266 + -2.4
64,266 + +1.6
64,288 + -2.2
64,309 + BACOVA_02293 0.12 +1.9
64,321 - BACOVA_02293 0.14 -0.5
64,355 - BACOVA_02293 0.20 +0.5
64,378 - BACOVA_02293 0.24 -0.2
64,378 - BACOVA_02293 0.24 -1.0
64,381 + BACOVA_02293 0.24 -1.0
64,382 - BACOVA_02293 0.24 -0.4
64,383 + BACOVA_02293 0.25 -1.1
64,450 + BACOVA_02293 0.36 -1.5
64,490 + BACOVA_02293 0.42 +2.4
64,490 + BACOVA_02293 0.42 -0.6
64,491 - BACOVA_02293 0.43 -1.8
64,528 + BACOVA_02293 0.49 -0.4
64,528 + BACOVA_02293 0.49 -1.2
64,529 - BACOVA_02293 0.49 +0.1
64,608 - BACOVA_02293 0.62 +0.3
64,612 + BACOVA_02293 0.63 +1.3
64,648 + BACOVA_02293 0.69 -1.2
64,648 + BACOVA_02293 0.69 +1.0
64,651 + BACOVA_02293 0.69 -0.4
64,651 + BACOVA_02293 0.69 -0.2
64,734 + BACOVA_02293 0.83 +0.2
64,811 + -0.4
64,812 - -1.2
64,814 - +1.4
64,816 - +1.1
64,816 - +0.0
64,970 + BACOVA_02294 0.18 -3.4
64,994 + BACOVA_02294 0.21 -1.8
65,001 + BACOVA_02294 0.22 -0.1
65,001 + BACOVA_02294 0.22 +1.3
65,002 - BACOVA_02294 0.22 -0.6
65,002 - BACOVA_02294 0.22 +0.7
65,005 + BACOVA_02294 0.22 +2.1
65,005 + BACOVA_02294 0.22 +1.6
65,006 - BACOVA_02294 0.23 +0.3
65,006 - BACOVA_02294 0.23 -0.6
65,006 - BACOVA_02294 0.23 -0.8
65,031 + BACOVA_02294 0.26 +0.6
65,052 + BACOVA_02294 0.29 +2.1
65,052 + BACOVA_02294 0.29 -1.5
65,086 - BACOVA_02294 0.33 +0.4
65,133 + BACOVA_02294 0.39 -0.3
65,146 + BACOVA_02294 0.41 +1.0
65,201 - BACOVA_02294 0.48 +0.3
65,201 - BACOVA_02294 0.48 +2.4
65,205 + BACOVA_02294 0.48 -1.6
65,205 + BACOVA_02294 0.48 +1.2
65,244 - BACOVA_02294 0.53 -0.3
65,256 + BACOVA_02294 0.55 +2.9
65,321 + BACOVA_02294 0.63 +2.8
65,325 + BACOVA_02294 0.64 -0.7
65,325 + BACOVA_02294 0.64 -2.0
65,326 - BACOVA_02294 0.64 +1.1
65,336 + BACOVA_02294 0.65 +1.1
65,336 + BACOVA_02294 0.65 -0.0
65,337 - BACOVA_02294 0.65 +0.4
65,347 - BACOVA_02294 0.67 -0.2
65,347 - BACOVA_02294 0.67 +2.6
65,365 - BACOVA_02294 0.69 -1.0
65,385 + BACOVA_02294 0.72 -0.3
65,429 + BACOVA_02294 0.77 +1.9
65,467 - BACOVA_02294 0.82 +0.3
65,469 + BACOVA_02294 0.82 -0.2
65,470 - BACOVA_02294 0.83 +1.8
65,483 + BACOVA_02294 0.84 -0.3
65,490 + BACOVA_02294 0.85 -1.0
65,490 + BACOVA_02294 0.85 +0.5
65,545 - +0.3
65,578 + +1.6
65,592 + -0.4
65,593 - -2.3
65,594 + +0.6
65,594 + +2.2
65,597 + -0.7
65,606 - +2.5
65,628 + -0.2
65,629 - -1.0
65,683 - -1.1
65,704 + BACOVA_02295 0.18 -0.0
65,705 - BACOVA_02295 0.19 +0.6
65,996 + +0.4
66,010 - -0.7
66,010 - -0.2
66,010 - +4.2
66,021 + +1.0
66,021 + -0.2
66,021 + -1.7
66,022 - -2.5
66,022 - +0.7
66,022 - +2.8
66,030 + -0.7
66,084 + BACOVA_02296 0.11 -2.5
66,085 - BACOVA_02296 0.11 -1.0
66,141 + BACOVA_02296 0.14 +2.6
66,142 - BACOVA_02296 0.14 -0.6
66,142 - BACOVA_02296 0.14 +2.8
66,142 - BACOVA_02296 0.14 -0.6
66,142 - BACOVA_02296 0.14 -0.3
66,207 + BACOVA_02296 0.19 -0.3
66,304 - BACOVA_02296 0.25 +0.3
66,514 - BACOVA_02296 0.39 -0.2
66,528 + BACOVA_02296 0.39 -0.6
66,529 - BACOVA_02296 0.39 +0.9
66,541 + BACOVA_02296 0.40 -0.1
66,542 - BACOVA_02296 0.40 +0.2
66,542 - BACOVA_02296 0.40 -0.1
66,546 - BACOVA_02296 0.41 +1.5
66,572 + BACOVA_02296 0.42 -0.5

Or see this region's nucleotide sequence