Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02261

Experiment: amylopectin from maize 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02260 and BACOVA_02261 overlap by 1 nucleotidesBACOVA_02261 and BACOVA_02262 are separated by 100 nucleotidesBACOVA_02262 and BACOVA_02263 are separated by 111 nucleotides BACOVA_02260: BACOVA_02260 - RmuC domain protein, at 36,620 to 37,855 _02260 BACOVA_02261: BACOVA_02261 - methionine aminopeptidase, type I, at 37,855 to 38,709 _02261 BACOVA_02262: BACOVA_02262 - hypothetical protein, at 38,810 to 39,433 _02262 BACOVA_02263: BACOVA_02263 - hypothetical protein, at 39,545 to 39,751 _02263 Position (kb) 37 38 39Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 36.912 kb on - strand, within BACOVA_02260at 36.940 kb on + strand, within BACOVA_02260at 36.940 kb on + strand, within BACOVA_02260at 36.941 kb on - strand, within BACOVA_02260at 36.941 kb on - strand, within BACOVA_02260at 36.984 kb on - strand, within BACOVA_02260at 36.993 kb on + strand, within BACOVA_02260at 36.994 kb on - strand, within BACOVA_02260at 36.994 kb on - strand, within BACOVA_02260at 36.995 kb on + strand, within BACOVA_02260at 36.995 kb on + strand, within BACOVA_02260at 36.995 kb on + strand, within BACOVA_02260at 36.996 kb on - strand, within BACOVA_02260at 36.996 kb on - strand, within BACOVA_02260at 36.996 kb on - strand, within BACOVA_02260at 36.996 kb on - strand, within BACOVA_02260at 37.037 kb on - strand, within BACOVA_02260at 37.049 kb on + strand, within BACOVA_02260at 37.049 kb on + strand, within BACOVA_02260at 37.050 kb on - strand, within BACOVA_02260at 37.050 kb on - strand, within BACOVA_02260at 37.057 kb on + strand, within BACOVA_02260at 37.057 kb on + strand, within BACOVA_02260at 37.155 kb on + strand, within BACOVA_02260at 37.156 kb on - strand, within BACOVA_02260at 37.156 kb on - strand, within BACOVA_02260at 37.164 kb on + strand, within BACOVA_02260at 37.164 kb on + strand, within BACOVA_02260at 37.167 kb on - strand, within BACOVA_02260at 37.200 kb on + strand, within BACOVA_02260at 37.200 kb on + strand, within BACOVA_02260at 37.319 kb on + strand, within BACOVA_02260at 37.365 kb on - strand, within BACOVA_02260at 37.559 kb on + strand, within BACOVA_02260at 37.624 kb on + strand, within BACOVA_02260at 37.758 kb on - strandat 37.802 kb on + strandat 37.803 kb on - strandat 37.803 kb on - strandat 37.803 kb on - strandat 37.808 kb on + strandat 37.808 kb on + strandat 37.809 kb on - strandat 37.809 kb on - strandat 37.809 kb on - strandat 37.837 kb on + strandat 37.837 kb on + strandat 37.838 kb on - strandat 37.842 kb on - strandat 37.857 kb on - strandat 37.857 kb on - strandat 37.860 kb on - strandat 37.900 kb on - strandat 37.936 kb on - strandat 37.977 kb on - strand, within BACOVA_02261at 37.990 kb on - strand, within BACOVA_02261at 37.995 kb on + strand, within BACOVA_02261at 37.995 kb on + strand, within BACOVA_02261at 37.995 kb on + strand, within BACOVA_02261at 37.996 kb on - strand, within BACOVA_02261at 38.207 kb on - strand, within BACOVA_02261at 38.233 kb on + strand, within BACOVA_02261at 38.233 kb on + strand, within BACOVA_02261at 38.272 kb on - strand, within BACOVA_02261at 38.277 kb on + strand, within BACOVA_02261at 38.307 kb on - strand, within BACOVA_02261at 38.323 kb on + strand, within BACOVA_02261at 38.323 kb on + strand, within BACOVA_02261at 38.324 kb on - strand, within BACOVA_02261at 38.332 kb on - strand, within BACOVA_02261at 38.335 kb on - strand, within BACOVA_02261at 38.384 kb on - strand, within BACOVA_02261at 38.426 kb on + strand, within BACOVA_02261at 38.426 kb on + strand, within BACOVA_02261at 38.472 kb on - strand, within BACOVA_02261at 38.472 kb on - strand, within BACOVA_02261at 38.476 kb on + strand, within BACOVA_02261at 38.477 kb on - strand, within BACOVA_02261at 38.477 kb on - strand, within BACOVA_02261at 38.527 kb on - strand, within BACOVA_02261at 38.527 kb on - strand, within BACOVA_02261at 38.569 kb on - strand, within BACOVA_02261at 38.596 kb on + strand, within BACOVA_02261at 38.616 kb on + strand, within BACOVA_02261at 38.641 kb on + strandat 38.641 kb on + strandat 38.653 kb on + strandat 38.670 kb on + strandat 38.711 kb on - strandat 38.711 kb on - strandat 38.720 kb on + strandat 38.721 kb on - strandat 38.730 kb on + strandat 38.761 kb on - strandat 38.811 kb on + strandat 38.841 kb on - strandat 38.871 kb on + strandat 38.878 kb on - strand, within BACOVA_02262at 38.908 kb on + strand, within BACOVA_02262at 38.996 kb on + strand, within BACOVA_02262at 39.003 kb on + strand, within BACOVA_02262at 39.003 kb on + strand, within BACOVA_02262at 39.004 kb on - strand, within BACOVA_02262at 39.005 kb on + strand, within BACOVA_02262at 39.005 kb on + strand, within BACOVA_02262at 39.006 kb on - strand, within BACOVA_02262at 39.029 kb on + strand, within BACOVA_02262at 39.092 kb on - strand, within BACOVA_02262at 39.116 kb on + strand, within BACOVA_02262at 39.123 kb on - strand, within BACOVA_02262at 39.132 kb on + strand, within BACOVA_02262at 39.161 kb on + strand, within BACOVA_02262at 39.162 kb on - strand, within BACOVA_02262at 39.174 kb on + strand, within BACOVA_02262at 39.175 kb on - strand, within BACOVA_02262at 39.261 kb on + strand, within BACOVA_02262at 39.261 kb on + strand, within BACOVA_02262at 39.261 kb on + strand, within BACOVA_02262at 39.262 kb on - strand, within BACOVA_02262at 39.262 kb on - strand, within BACOVA_02262at 39.296 kb on - strand, within BACOVA_02262at 39.299 kb on + strand, within BACOVA_02262at 39.299 kb on + strand, within BACOVA_02262at 39.381 kb on - strandat 39.393 kb on - strandat 39.434 kb on - strandat 39.458 kb on + strandat 39.458 kb on + strandat 39.459 kb on - strandat 39.459 kb on - strandat 39.505 kb on - strandat 39.511 kb on - strandat 39.520 kb on + strandat 39.543 kb on - strandat 39.560 kb on - strandat 39.579 kb on - strand, within BACOVA_02263at 39.647 kb on + strand, within BACOVA_02263at 39.648 kb on - strand, within BACOVA_02263at 39.648 kb on - strand, within BACOVA_02263at 39.681 kb on - strand, within BACOVA_02263at 39.702 kb on - strand, within BACOVA_02263

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C)
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36,912 - BACOVA_02260 0.24 +0.2
36,940 + BACOVA_02260 0.26 -1.6
36,940 + BACOVA_02260 0.26 +0.7
36,941 - BACOVA_02260 0.26 +1.3
36,941 - BACOVA_02260 0.26 -0.6
36,984 - BACOVA_02260 0.29 +1.0
36,993 + BACOVA_02260 0.30 -1.5
36,994 - BACOVA_02260 0.30 +1.9
36,994 - BACOVA_02260 0.30 -0.3
36,995 + BACOVA_02260 0.30 +2.0
36,995 + BACOVA_02260 0.30 +0.3
36,995 + BACOVA_02260 0.30 -0.9
36,996 - BACOVA_02260 0.30 -0.6
36,996 - BACOVA_02260 0.30 -0.3
36,996 - BACOVA_02260 0.30 +3.6
36,996 - BACOVA_02260 0.30 -0.0
37,037 - BACOVA_02260 0.34 -1.0
37,049 + BACOVA_02260 0.35 +1.4
37,049 + BACOVA_02260 0.35 -0.6
37,050 - BACOVA_02260 0.35 -1.3
37,050 - BACOVA_02260 0.35 -2.2
37,057 + BACOVA_02260 0.35 -1.8
37,057 + BACOVA_02260 0.35 -1.4
37,155 + BACOVA_02260 0.43 +0.8
37,156 - BACOVA_02260 0.43 -1.7
37,156 - BACOVA_02260 0.43 +1.4
37,164 + BACOVA_02260 0.44 -1.3
37,164 + BACOVA_02260 0.44 -0.7
37,167 - BACOVA_02260 0.44 +0.2
37,200 + BACOVA_02260 0.47 -0.2
37,200 + BACOVA_02260 0.47 -0.9
37,319 + BACOVA_02260 0.57 +2.3
37,365 - BACOVA_02260 0.60 -0.2
37,559 + BACOVA_02260 0.76 +0.7
37,624 + BACOVA_02260 0.81 -0.8
37,758 - -1.3
37,802 + -0.8
37,803 - +0.6
37,803 - +0.6
37,803 - +0.8
37,808 + -2.4
37,808 + +0.7
37,809 - +2.0
37,809 - -0.6
37,809 - -1.0
37,837 + -1.7
37,837 + +3.3
37,838 - +0.1
37,842 - -1.3
37,857 - -1.2
37,857 - +0.6
37,860 - +3.4
37,900 - -1.9
37,936 - -0.1
37,977 - BACOVA_02261 0.14 -0.6
37,990 - BACOVA_02261 0.16 -0.5
37,995 + BACOVA_02261 0.16 -0.4
37,995 + BACOVA_02261 0.16 -3.1
37,995 + BACOVA_02261 0.16 -1.6
37,996 - BACOVA_02261 0.16 -2.1
38,207 - BACOVA_02261 0.41 -0.9
38,233 + BACOVA_02261 0.44 +1.2
38,233 + BACOVA_02261 0.44 -1.7
38,272 - BACOVA_02261 0.49 -0.2
38,277 + BACOVA_02261 0.49 -0.2
38,307 - BACOVA_02261 0.53 +1.2
38,323 + BACOVA_02261 0.55 +1.6
38,323 + BACOVA_02261 0.55 -0.9
38,324 - BACOVA_02261 0.55 +1.3
38,332 - BACOVA_02261 0.56 -0.5
38,335 - BACOVA_02261 0.56 +0.3
38,384 - BACOVA_02261 0.62 +4.1
38,426 + BACOVA_02261 0.67 -2.0
38,426 + BACOVA_02261 0.67 -4.0
38,472 - BACOVA_02261 0.72 +0.3
38,472 - BACOVA_02261 0.72 +1.8
38,476 + BACOVA_02261 0.73 -1.2
38,477 - BACOVA_02261 0.73 +0.8
38,477 - BACOVA_02261 0.73 -1.2
38,527 - BACOVA_02261 0.79 +3.1
38,527 - BACOVA_02261 0.79 -0.6
38,569 - BACOVA_02261 0.84 +0.8
38,596 + BACOVA_02261 0.87 -0.7
38,616 + BACOVA_02261 0.89 +0.1
38,641 + -0.2
38,641 + +0.5
38,653 + -0.2
38,670 + -0.2
38,711 - -0.7
38,711 - -0.4
38,720 + -0.2
38,721 - +1.4
38,730 + -0.2
38,761 - -0.7
38,811 + -1.7
38,841 - -1.2
38,871 + +3.1
38,878 - BACOVA_02262 0.11 +2.3
38,908 + BACOVA_02262 0.16 -0.8
38,996 + BACOVA_02262 0.30 +0.6
39,003 + BACOVA_02262 0.31 +1.9
39,003 + BACOVA_02262 0.31 +1.4
39,004 - BACOVA_02262 0.31 +0.2
39,005 + BACOVA_02262 0.31 -1.7
39,005 + BACOVA_02262 0.31 +2.8
39,006 - BACOVA_02262 0.31 -1.0
39,029 + BACOVA_02262 0.35 +2.4
39,092 - BACOVA_02262 0.45 -1.7
39,116 + BACOVA_02262 0.49 -0.4
39,123 - BACOVA_02262 0.50 -2.0
39,132 + BACOVA_02262 0.52 +0.2
39,161 + BACOVA_02262 0.56 +1.7
39,162 - BACOVA_02262 0.56 +2.2
39,174 + BACOVA_02262 0.58 -0.1
39,175 - BACOVA_02262 0.58 -1.0
39,261 + BACOVA_02262 0.72 +0.3
39,261 + BACOVA_02262 0.72 +0.1
39,261 + BACOVA_02262 0.72 -0.6
39,262 - BACOVA_02262 0.72 +0.3
39,262 - BACOVA_02262 0.72 +2.4
39,296 - BACOVA_02262 0.78 -2.0
39,299 + BACOVA_02262 0.78 -0.6
39,299 + BACOVA_02262 0.78 -0.0
39,381 - -1.6
39,393 - -1.4
39,434 - +2.2
39,458 + +2.2
39,458 + -0.2
39,459 - -1.3
39,459 - -0.6
39,505 - -1.5
39,511 - +1.9
39,520 + -3.6
39,543 - -1.2
39,560 - -0.9
39,579 - BACOVA_02263 0.16 +1.1
39,647 + BACOVA_02263 0.49 +0.1
39,648 - BACOVA_02263 0.50 -1.0
39,648 - BACOVA_02263 0.50 +0.6
39,681 - BACOVA_02263 0.66 +1.0
39,702 - BACOVA_02263 0.76 -0.4

Or see this region's nucleotide sequence