Experiment: amylopectin from maize 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02237 and BACOVA_02238 are separated by 5 nucleotides BACOVA_02238 and BACOVA_02239 overlap by 4 nucleotides BACOVA_02239 and BACOVA_02240 are separated by 14 nucleotides
BACOVA_02237: BACOVA_02237 - electron transport complex, RnfABCDGE type, C subunit, at 16,556 to 17,893
_02237
BACOVA_02238: BACOVA_02238 - electron transport complex, RnfABCDGE type, D subunit, at 17,899 to 18,891
_02238
BACOVA_02239: BACOVA_02239 - electron transport complex, RnfABCDGE type, G subunit, at 18,888 to 19,634
_02239
BACOVA_02240: BACOVA_02240 - electron transport complex, RnfABCDGE type, E subunit, at 19,649 to 20,233
_02240
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 16.987 kb on + strand, within BACOVA_02237 at 17.116 kb on - strand, within BACOVA_02237 at 17.177 kb on - strand, within BACOVA_02237 at 17.180 kb on - strand, within BACOVA_02237 at 17.207 kb on - strand, within BACOVA_02237 at 17.329 kb on + strand, within BACOVA_02237 at 17.330 kb on - strand, within BACOVA_02237 at 17.330 kb on - strand, within BACOVA_02237 at 17.525 kb on - strand, within BACOVA_02237 at 17.587 kb on + strand, within BACOVA_02237 at 17.709 kb on - strand, within BACOVA_02237 at 17.777 kb on - strand at 17.899 kb on - strand at 17.918 kb on + strand at 17.919 kb on - strand at 17.955 kb on - strand at 17.969 kb on - strand at 17.969 kb on - strand at 17.969 kb on - strand at 17.969 kb on - strand at 18.166 kb on - strand, within BACOVA_02238 at 18.196 kb on - strand, within BACOVA_02238 at 18.232 kb on - strand, within BACOVA_02238 at 18.252 kb on - strand, within BACOVA_02238 at 18.394 kb on - strand, within BACOVA_02238 at 18.410 kb on - strand, within BACOVA_02238 at 18.524 kb on - strand, within BACOVA_02238 at 18.525 kb on + strand, within BACOVA_02238 at 18.525 kb on + strand, within BACOVA_02238 at 18.526 kb on - strand, within BACOVA_02238 at 18.526 kb on - strand, within BACOVA_02238 at 18.556 kb on - strand, within BACOVA_02238 at 18.556 kb on - strand, within BACOVA_02238 at 18.695 kb on - strand, within BACOVA_02238 at 18.695 kb on - strand, within BACOVA_02238 at 18.734 kb on - strand, within BACOVA_02238 at 18.734 kb on - strand, within BACOVA_02238 at 18.740 kb on + strand, within BACOVA_02238 at 18.740 kb on + strand, within BACOVA_02238 at 18.741 kb on - strand, within BACOVA_02238 at 18.741 kb on - strand, within BACOVA_02238 at 18.741 kb on - strand, within BACOVA_02238 at 18.741 kb on - strand, within BACOVA_02238 at 18.848 kb on - strand at 18.899 kb on - strand at 18.973 kb on + strand, within BACOVA_02239 at 19.056 kb on - strand, within BACOVA_02239 at 19.056 kb on - strand, within BACOVA_02239 at 19.056 kb on - strand, within BACOVA_02239 at 19.056 kb on - strand, within BACOVA_02239 at 19.248 kb on + strand, within BACOVA_02239 at 19.249 kb on - strand, within BACOVA_02239 at 19.315 kb on - strand, within BACOVA_02239 at 19.343 kb on - strand, within BACOVA_02239 at 19.359 kb on - strand, within BACOVA_02239 at 19.367 kb on + strand, within BACOVA_02239 at 19.497 kb on + strand, within BACOVA_02239 at 19.500 kb on - strand, within BACOVA_02239 at 19.649 kb on - strand at 19.661 kb on - strand at 19.666 kb on - strand at 19.718 kb on - strand, within BACOVA_02240 at 19.726 kb on + strand, within BACOVA_02240 at 19.739 kb on - strand, within BACOVA_02240 at 19.759 kb on + strand, within BACOVA_02240 at 19.760 kb on - strand, within BACOVA_02240 at 19.778 kb on - strand, within BACOVA_02240 at 19.789 kb on - strand, within BACOVA_02240
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C) remove 16,987 + BACOVA_02237 0.32 -1.3 17,116 - BACOVA_02237 0.42 -1.0 17,177 - BACOVA_02237 0.46 -1.8 17,180 - BACOVA_02237 0.47 -0.8 17,207 - BACOVA_02237 0.49 +1.4 17,329 + BACOVA_02237 0.58 -0.0 17,330 - BACOVA_02237 0.58 -1.8 17,330 - BACOVA_02237 0.58 -1.4 17,525 - BACOVA_02237 0.72 -0.7 17,587 + BACOVA_02237 0.77 +0.1 17,709 - BACOVA_02237 0.86 -2.3 17,777 - -3.1 17,899 - -2.0 17,918 + -1.5 17,919 - -2.6 17,955 - -0.6 17,969 - -2.6 17,969 - -0.4 17,969 - -2.2 17,969 - -1.4 18,166 - BACOVA_02238 0.27 -0.2 18,196 - BACOVA_02238 0.30 -1.9 18,232 - BACOVA_02238 0.34 -0.4 18,252 - BACOVA_02238 0.36 -0.6 18,394 - BACOVA_02238 0.50 -0.6 18,410 - BACOVA_02238 0.51 -2.0 18,524 - BACOVA_02238 0.63 -0.4 18,525 + BACOVA_02238 0.63 -0.2 18,525 + BACOVA_02238 0.63 -1.4 18,526 - BACOVA_02238 0.63 -2.6 18,526 - BACOVA_02238 0.63 -2.4 18,556 - BACOVA_02238 0.66 -1.6 18,556 - BACOVA_02238 0.66 -1.2 18,695 - BACOVA_02238 0.80 -0.7 18,695 - BACOVA_02238 0.80 -1.3 18,734 - BACOVA_02238 0.84 -1.3 18,734 - BACOVA_02238 0.84 -1.0 18,740 + BACOVA_02238 0.85 -1.0 18,740 + BACOVA_02238 0.85 +0.8 18,741 - BACOVA_02238 0.85 -3.5 18,741 - BACOVA_02238 0.85 -2.4 18,741 - BACOVA_02238 0.85 -1.2 18,741 - BACOVA_02238 0.85 -0.2 18,848 - -1.6 18,899 - -1.1 18,973 + BACOVA_02239 0.11 -0.9 19,056 - BACOVA_02239 0.22 -0.6 19,056 - BACOVA_02239 0.22 -2.3 19,056 - BACOVA_02239 0.22 -0.6 19,056 - BACOVA_02239 0.22 -1.3 19,248 + BACOVA_02239 0.48 +1.0 19,249 - BACOVA_02239 0.48 -1.6 19,315 - BACOVA_02239 0.57 -2.1 19,343 - BACOVA_02239 0.61 +0.1 19,359 - BACOVA_02239 0.63 -1.4 19,367 + BACOVA_02239 0.64 -0.4 19,497 + BACOVA_02239 0.82 -0.2 19,500 - BACOVA_02239 0.82 -1.5 19,649 - -0.7 19,661 - -0.4 19,666 - -0.7 19,718 - BACOVA_02240 0.12 -1.4 19,726 + BACOVA_02240 0.13 +1.4 19,739 - BACOVA_02240 0.15 -1.4 19,759 + BACOVA_02240 0.19 -0.2 19,760 - BACOVA_02240 0.19 -1.2 19,778 - BACOVA_02240 0.22 -1.2 19,789 - BACOVA_02240 0.24 -1.3
Or see this region's nucleotide sequence