Experiment: amylopectin from maize 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02145 and BACOVA_02146 are separated by 51 nucleotides BACOVA_02146 and BACOVA_02147 are separated by 40 nucleotides BACOVA_02147 and BACOVA_02148 are separated by 37 nucleotides BACOVA_02148 and BACOVA_02149 are separated by 88 nucleotides BACOVA_02149 and BACOVA_02150 are separated by 83 nucleotides BACOVA_02150 and BACOVA_02151 are separated by 330 nucleotides
BACOVA_02145: BACOVA_02145 - hypothetical protein, at 486,038 to 486,490
_02145
BACOVA_02146: BACOVA_02146 - hypothetical protein, at 486,542 to 486,700
_02146
BACOVA_02147: BACOVA_02147 - hypothetical protein, at 486,741 to 486,971
_02147
BACOVA_02148: BACOVA_02148 - hypothetical protein, at 487,009 to 487,191
_02148
BACOVA_02149: BACOVA_02149 - hypothetical protein, at 487,280 to 487,504
_02149
BACOVA_02150: BACOVA_02150 - hypothetical protein, at 487,588 to 487,863
_02150
BACOVA_02151: BACOVA_02151 - hypothetical protein, at 488,194 to 488,451
_02151
Position (kb) 487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 486.300 kb on + strand, within BACOVA_02145 at 486.306 kb on + strand, within BACOVA_02145 at 486.311 kb on - strand, within BACOVA_02145 at 486.326 kb on - strand, within BACOVA_02145 at 486.345 kb on + strand, within BACOVA_02145 at 486.346 kb on - strand, within BACOVA_02145 at 486.346 kb on - strand, within BACOVA_02145 at 486.346 kb on - strand, within BACOVA_02145 at 486.346 kb on - strand, within BACOVA_02145 at 486.356 kb on - strand, within BACOVA_02145 at 486.375 kb on + strand, within BACOVA_02145 at 486.388 kb on - strand, within BACOVA_02145 at 486.406 kb on + strand, within BACOVA_02145 at 486.406 kb on + strand, within BACOVA_02145 at 486.410 kb on - strand, within BACOVA_02145 at 486.416 kb on + strand, within BACOVA_02145 at 486.416 kb on + strand, within BACOVA_02145 at 486.416 kb on + strand, within BACOVA_02145 at 486.416 kb on + strand, within BACOVA_02145 at 486.417 kb on - strand, within BACOVA_02145 at 486.417 kb on - strand, within BACOVA_02145 at 486.421 kb on + strand, within BACOVA_02145 at 486.422 kb on - strand, within BACOVA_02145 at 486.422 kb on - strand, within BACOVA_02145 at 486.422 kb on - strand, within BACOVA_02145 at 486.422 kb on - strand, within BACOVA_02145 at 486.439 kb on + strand, within BACOVA_02145 at 486.456 kb on - strand at 486.465 kb on + strand at 486.470 kb on - strand at 486.478 kb on + strand at 486.502 kb on - strand at 486.503 kb on + strand at 486.503 kb on + strand at 486.503 kb on + strand at 486.522 kb on + strand at 486.542 kb on - strand at 486.546 kb on + strand at 486.547 kb on - strand at 486.628 kb on + strand, within BACOVA_02146 at 486.655 kb on + strand, within BACOVA_02146 at 486.656 kb on - strand, within BACOVA_02146 at 486.671 kb on - strand, within BACOVA_02146 at 486.671 kb on - strand, within BACOVA_02146 at 486.675 kb on + strand, within BACOVA_02146 at 486.694 kb on - strand at 486.696 kb on + strand at 486.696 kb on + strand at 486.696 kb on + strand at 486.698 kb on + strand at 486.698 kb on + strand at 486.711 kb on + strand at 486.712 kb on - strand at 486.733 kb on + strand at 486.733 kb on + strand at 486.736 kb on + strand at 486.741 kb on - strand at 486.781 kb on + strand, within BACOVA_02147 at 486.782 kb on - strand, within BACOVA_02147 at 486.784 kb on + strand, within BACOVA_02147 at 486.784 kb on + strand, within BACOVA_02147 at 486.787 kb on + strand, within BACOVA_02147 at 486.820 kb on + strand, within BACOVA_02147 at 486.837 kb on - strand, within BACOVA_02147 at 486.839 kb on + strand, within BACOVA_02147 at 486.839 kb on + strand, within BACOVA_02147 at 486.839 kb on + strand, within BACOVA_02147 at 486.840 kb on - strand, within BACOVA_02147 at 486.853 kb on + strand, within BACOVA_02147 at 486.853 kb on + strand, within BACOVA_02147 at 486.888 kb on - strand, within BACOVA_02147 at 486.896 kb on + strand, within BACOVA_02147 at 486.899 kb on - strand, within BACOVA_02147 at 486.910 kb on + strand, within BACOVA_02147 at 486.923 kb on - strand, within BACOVA_02147 at 486.923 kb on - strand, within BACOVA_02147 at 486.923 kb on - strand, within BACOVA_02147 at 486.935 kb on - strand, within BACOVA_02147 at 486.944 kb on + strand, within BACOVA_02147 at 486.945 kb on - strand, within BACOVA_02147 at 486.945 kb on - strand, within BACOVA_02147 at 486.949 kb on + strand at 486.950 kb on - strand at 486.969 kb on + strand at 486.970 kb on - strand at 486.983 kb on + strand at 486.989 kb on - strand at 487.000 kb on - strand at 487.005 kb on - strand at 487.009 kb on - strand at 487.042 kb on - strand, within BACOVA_02148 at 487.044 kb on + strand, within BACOVA_02148 at 487.097 kb on + strand, within BACOVA_02148 at 487.121 kb on + strand, within BACOVA_02148 at 487.121 kb on + strand, within BACOVA_02148 at 487.122 kb on - strand, within BACOVA_02148 at 487.122 kb on - strand, within BACOVA_02148 at 487.125 kb on + strand, within BACOVA_02148 at 487.144 kb on - strand, within BACOVA_02148 at 487.144 kb on - strand, within BACOVA_02148 at 487.144 kb on - strand, within BACOVA_02148 at 487.149 kb on - strand, within BACOVA_02148 at 487.195 kb on + strand at 487.196 kb on - strand at 487.199 kb on - strand at 487.199 kb on - strand at 487.199 kb on - strand at 487.199 kb on - strand at 487.209 kb on + strand at 487.227 kb on + strand at 487.251 kb on - strand at 487.257 kb on - strand at 487.257 kb on - strand at 487.263 kb on - strand at 487.263 kb on - strand at 487.271 kb on + strand at 487.301 kb on + strand at 487.302 kb on - strand at 487.302 kb on - strand at 487.302 kb on - strand at 487.312 kb on - strand, within BACOVA_02149 at 487.315 kb on - strand, within BACOVA_02149 at 487.315 kb on - strand, within BACOVA_02149 at 487.338 kb on + strand, within BACOVA_02149 at 487.386 kb on + strand, within BACOVA_02149 at 487.396 kb on + strand, within BACOVA_02149 at 487.406 kb on - strand, within BACOVA_02149 at 487.406 kb on - strand, within BACOVA_02149 at 487.456 kb on + strand, within BACOVA_02149 at 487.545 kb on + strand at 487.563 kb on + strand at 487.564 kb on - strand at 487.564 kb on - strand at 487.564 kb on - strand at 487.573 kb on + strand at 487.573 kb on + strand at 487.574 kb on - strand at 487.574 kb on - strand at 487.576 kb on + strand at 487.576 kb on + strand at 487.578 kb on + strand at 487.578 kb on + strand at 487.587 kb on + strand at 487.588 kb on - strand at 487.588 kb on - strand at 487.588 kb on - strand at 487.648 kb on + strand, within BACOVA_02150 at 487.649 kb on - strand, within BACOVA_02150 at 487.680 kb on - strand, within BACOVA_02150 at 487.680 kb on - strand, within BACOVA_02150 at 487.680 kb on - strand, within BACOVA_02150 at 487.703 kb on + strand, within BACOVA_02150 at 487.703 kb on + strand, within BACOVA_02150 at 487.704 kb on - strand, within BACOVA_02150 at 487.704 kb on - strand, within BACOVA_02150 at 487.706 kb on - strand, within BACOVA_02150 at 487.706 kb on - strand, within BACOVA_02150 at 487.718 kb on + strand, within BACOVA_02150 at 487.722 kb on + strand, within BACOVA_02150 at 487.722 kb on + strand, within BACOVA_02150 at 487.722 kb on + strand, within BACOVA_02150 at 487.724 kb on + strand, within BACOVA_02150 at 487.724 kb on + strand, within BACOVA_02150 at 487.741 kb on + strand, within BACOVA_02150 at 487.742 kb on - strand, within BACOVA_02150 at 487.753 kb on - strand, within BACOVA_02150 at 487.753 kb on - strand, within BACOVA_02150 at 487.784 kb on + strand, within BACOVA_02150 at 487.785 kb on - strand, within BACOVA_02150 at 487.794 kb on + strand, within BACOVA_02150 at 487.854 kb on + strand at 487.860 kb on - strand at 487.861 kb on + strand at 487.862 kb on - strand at 487.862 kb on - strand at 487.872 kb on + strand at 487.878 kb on + strand at 487.879 kb on - strand at 487.880 kb on + strand at 487.880 kb on + strand at 487.880 kb on + strand at 487.881 kb on - strand at 487.881 kb on - strand at 487.881 kb on - strand at 487.881 kb on - strand at 487.882 kb on + strand at 487.882 kb on + strand at 487.900 kb on + strand at 487.900 kb on + strand at 487.912 kb on + strand at 487.913 kb on - strand at 487.913 kb on - strand at 487.923 kb on - strand at 487.929 kb on - strand at 487.935 kb on + strand at 487.938 kb on + strand at 487.941 kb on + strand at 487.942 kb on - strand at 487.942 kb on - strand at 487.944 kb on + strand at 487.945 kb on - strand at 487.947 kb on + strand at 487.951 kb on + strand at 487.977 kb on - strand at 487.986 kb on + strand at 487.991 kb on + strand at 487.995 kb on + strand at 488.000 kb on + strand at 488.001 kb on - strand at 488.022 kb on - strand at 488.026 kb on - strand at 488.055 kb on - strand at 488.074 kb on + strand at 488.087 kb on - strand at 488.113 kb on - strand at 488.113 kb on - strand at 488.130 kb on - strand at 488.132 kb on - strand at 488.175 kb on + strand at 488.193 kb on + strand at 488.215 kb on - strand at 488.275 kb on + strand, within BACOVA_02151 at 488.275 kb on + strand, within BACOVA_02151 at 488.275 kb on + strand, within BACOVA_02151 at 488.276 kb on - strand, within BACOVA_02151 at 488.277 kb on + strand, within BACOVA_02151 at 488.277 kb on + strand, within BACOVA_02151 at 488.277 kb on + strand, within BACOVA_02151 at 488.328 kb on - strand, within BACOVA_02151 at 488.359 kb on - strand, within BACOVA_02151 at 488.391 kb on - strand, within BACOVA_02151 at 488.407 kb on - strand, within BACOVA_02151 at 488.407 kb on - strand, within BACOVA_02151 at 488.418 kb on - strand, within BACOVA_02151 at 488.429 kb on + strand at 488.430 kb on - strand at 488.449 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C) remove 486,300 + BACOVA_02145 0.58 -1.1 486,306 + BACOVA_02145 0.59 -1.3 486,311 - BACOVA_02145 0.60 +0.7 486,326 - BACOVA_02145 0.64 -0.9 486,345 + BACOVA_02145 0.68 -0.8 486,346 - BACOVA_02145 0.68 -1.5 486,346 - BACOVA_02145 0.68 +0.8 486,346 - BACOVA_02145 0.68 -0.1 486,346 - BACOVA_02145 0.68 -1.2 486,356 - BACOVA_02145 0.70 -0.6 486,375 + BACOVA_02145 0.74 +2.1 486,388 - BACOVA_02145 0.77 +1.1 486,406 + BACOVA_02145 0.81 -0.0 486,406 + BACOVA_02145 0.81 -2.0 486,410 - BACOVA_02145 0.82 +2.1 486,416 + BACOVA_02145 0.83 -0.6 486,416 + BACOVA_02145 0.83 +1.5 486,416 + BACOVA_02145 0.83 -0.5 486,416 + BACOVA_02145 0.83 -0.3 486,417 - BACOVA_02145 0.84 -0.1 486,417 - BACOVA_02145 0.84 -0.4 486,421 + BACOVA_02145 0.85 -0.6 486,422 - BACOVA_02145 0.85 -1.5 486,422 - BACOVA_02145 0.85 -0.1 486,422 - BACOVA_02145 0.85 -1.2 486,422 - BACOVA_02145 0.85 +1.2 486,439 + BACOVA_02145 0.89 +0.1 486,456 - -1.6 486,465 + -0.8 486,470 - -0.3 486,478 + -1.7 486,502 - +2.2 486,503 + +3.1 486,503 + +0.4 486,503 + -1.0 486,522 + -2.5 486,542 - +1.3 486,546 + -1.2 486,547 - +0.2 486,628 + BACOVA_02146 0.54 -1.0 486,655 + BACOVA_02146 0.71 -0.2 486,656 - BACOVA_02146 0.72 -0.2 486,671 - BACOVA_02146 0.81 -1.7 486,671 - BACOVA_02146 0.81 -0.3 486,675 + BACOVA_02146 0.84 -0.1 486,694 - +1.3 486,696 + -0.7 486,696 + -0.2 486,696 + -1.5 486,698 + -0.9 486,698 + +0.0 486,711 + +0.6 486,712 - +0.5 486,733 + -0.5 486,733 + +0.9 486,736 + -0.1 486,741 - -1.8 486,781 + BACOVA_02147 0.17 -0.9 486,782 - BACOVA_02147 0.18 +0.5 486,784 + BACOVA_02147 0.19 +0.7 486,784 + BACOVA_02147 0.19 -0.9 486,787 + BACOVA_02147 0.20 +0.6 486,820 + BACOVA_02147 0.34 -0.4 486,837 - BACOVA_02147 0.42 -1.4 486,839 + BACOVA_02147 0.42 -0.5 486,839 + BACOVA_02147 0.42 -0.7 486,839 + BACOVA_02147 0.42 +2.8 486,840 - BACOVA_02147 0.43 -0.7 486,853 + BACOVA_02147 0.48 +0.5 486,853 + BACOVA_02147 0.48 -0.7 486,888 - BACOVA_02147 0.64 -0.6 486,896 + BACOVA_02147 0.67 +0.4 486,899 - BACOVA_02147 0.68 +3.2 486,910 + BACOVA_02147 0.73 +0.1 486,923 - BACOVA_02147 0.79 +1.0 486,923 - BACOVA_02147 0.79 +1.9 486,923 - BACOVA_02147 0.79 -0.0 486,935 - BACOVA_02147 0.84 +1.3 486,944 + BACOVA_02147 0.88 -0.8 486,945 - BACOVA_02147 0.88 +1.0 486,945 - BACOVA_02147 0.88 -1.8 486,949 + -1.7 486,950 - -1.1 486,969 + -1.4 486,970 - +0.6 486,983 + +0.8 486,989 - -0.0 487,000 - +1.0 487,005 - -0.9 487,009 - +1.0 487,042 - BACOVA_02148 0.18 -0.5 487,044 + BACOVA_02148 0.19 -0.2 487,097 + BACOVA_02148 0.48 -0.2 487,121 + BACOVA_02148 0.61 +2.3 487,121 + BACOVA_02148 0.61 -1.1 487,122 - BACOVA_02148 0.62 -0.2 487,122 - BACOVA_02148 0.62 -0.5 487,125 + BACOVA_02148 0.63 -0.4 487,144 - BACOVA_02148 0.74 +3.3 487,144 - BACOVA_02148 0.74 -0.5 487,144 - BACOVA_02148 0.74 -1.3 487,149 - BACOVA_02148 0.77 -0.5 487,195 + -0.3 487,196 - -1.1 487,199 - +0.6 487,199 - -1.7 487,199 - +1.8 487,199 - -0.7 487,209 + +2.4 487,227 + -0.5 487,251 - +2.9 487,257 - -0.1 487,257 - -0.4 487,263 - -1.5 487,263 - +0.3 487,271 + +1.8 487,301 + -1.2 487,302 - -0.1 487,302 - -0.6 487,302 - +2.7 487,312 - BACOVA_02149 0.14 +0.0 487,315 - BACOVA_02149 0.16 -0.4 487,315 - BACOVA_02149 0.16 -0.7 487,338 + BACOVA_02149 0.26 -1.5 487,386 + BACOVA_02149 0.47 +0.2 487,396 + BACOVA_02149 0.52 -1.5 487,406 - BACOVA_02149 0.56 -0.8 487,406 - BACOVA_02149 0.56 +0.3 487,456 + BACOVA_02149 0.78 -0.8 487,545 + +0.8 487,563 + +1.3 487,564 - -0.5 487,564 - -0.0 487,564 - +0.3 487,573 + -1.1 487,573 + -1.3 487,574 - +0.9 487,574 - +1.8 487,576 + -2.8 487,576 + +0.5 487,578 + -0.5 487,578 + -1.8 487,587 + +3.2 487,588 - -0.5 487,588 - -1.9 487,588 - -0.5 487,648 + BACOVA_02150 0.22 -0.1 487,649 - BACOVA_02150 0.22 -0.5 487,680 - BACOVA_02150 0.33 +0.7 487,680 - BACOVA_02150 0.33 -1.3 487,680 - BACOVA_02150 0.33 -0.2 487,703 + BACOVA_02150 0.42 -0.5 487,703 + BACOVA_02150 0.42 -0.2 487,704 - BACOVA_02150 0.42 -1.0 487,704 - BACOVA_02150 0.42 -0.9 487,706 - BACOVA_02150 0.43 -0.8 487,706 - BACOVA_02150 0.43 +0.7 487,718 + BACOVA_02150 0.47 +0.2 487,722 + BACOVA_02150 0.49 +1.5 487,722 + BACOVA_02150 0.49 -1.3 487,722 + BACOVA_02150 0.49 +0.8 487,724 + BACOVA_02150 0.49 -0.9 487,724 + BACOVA_02150 0.49 +1.4 487,741 + BACOVA_02150 0.55 +0.5 487,742 - BACOVA_02150 0.56 +0.5 487,753 - BACOVA_02150 0.60 +0.5 487,753 - BACOVA_02150 0.60 +0.3 487,784 + BACOVA_02150 0.71 +0.2 487,785 - BACOVA_02150 0.71 -2.4 487,794 + BACOVA_02150 0.75 +0.7 487,854 + -0.6 487,860 - +0.4 487,861 + +0.0 487,862 - +1.3 487,862 - +1.2 487,872 + +0.1 487,878 + -1.3 487,879 - +0.6 487,880 + -1.1 487,880 + +1.8 487,880 + +0.2 487,881 - +0.0 487,881 - +0.6 487,881 - +0.5 487,881 - -1.5 487,882 + -1.2 487,882 + +0.3 487,900 + +0.8 487,900 + -0.8 487,912 + -1.8 487,913 - -0.4 487,913 - -0.4 487,923 - -0.2 487,929 - -1.0 487,935 + +1.5 487,938 + +2.9 487,941 + -1.2 487,942 - +1.5 487,942 - -0.1 487,944 + -1.9 487,945 - -0.2 487,947 + +1.3 487,951 + +0.2 487,977 - -0.2 487,986 + -0.8 487,991 + -2.6 487,995 + -0.1 488,000 + -3.1 488,001 - -0.1 488,022 - +3.0 488,026 - -1.4 488,055 - -2.0 488,074 + -1.9 488,087 - -2.1 488,113 - +1.0 488,113 - +0.5 488,130 - +0.3 488,132 - -1.0 488,175 + -2.0 488,193 + -1.6 488,215 - -1.7 488,275 + BACOVA_02151 0.31 +1.1 488,275 + BACOVA_02151 0.31 +3.4 488,275 + BACOVA_02151 0.31 +4.0 488,276 - BACOVA_02151 0.32 -1.1 488,277 + BACOVA_02151 0.32 +0.7 488,277 + BACOVA_02151 0.32 +2.6 488,277 + BACOVA_02151 0.32 +2.2 488,328 - BACOVA_02151 0.52 +1.2 488,359 - BACOVA_02151 0.64 -1.4 488,391 - BACOVA_02151 0.76 +1.2 488,407 - BACOVA_02151 0.83 -2.1 488,407 - BACOVA_02151 0.83 -1.1 488,418 - BACOVA_02151 0.87 +1.2 488,429 + +1.7 488,430 - +0.5 488,449 + +0.9
Or see this region's nucleotide sequence