Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02068

Experiment: amylopectin from maize 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02067 and BACOVA_02068 are separated by 84 nucleotidesBACOVA_02068 and BACOVA_02069 are separated by 177 nucleotides BACOVA_02067: BACOVA_02067 - alkyl hydroperoxide reductase, F subunit, at 387,029 to 388,579 _02067 BACOVA_02068: BACOVA_02068 - peroxiredoxin, at 388,664 to 389,230 _02068 BACOVA_02069: BACOVA_02069 - hydrolase, NUDIX family, at 389,408 to 389,968 _02069 Position (kb) 388 389 390Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 387.674 kb on - strand, within BACOVA_02067at 387.674 kb on - strand, within BACOVA_02067at 387.714 kb on - strand, within BACOVA_02067at 387.718 kb on + strand, within BACOVA_02067at 387.719 kb on - strand, within BACOVA_02067at 387.870 kb on - strand, within BACOVA_02067at 387.870 kb on - strand, within BACOVA_02067at 387.884 kb on - strand, within BACOVA_02067at 387.894 kb on + strand, within BACOVA_02067at 387.894 kb on + strand, within BACOVA_02067at 387.895 kb on - strand, within BACOVA_02067at 387.899 kb on - strand, within BACOVA_02067at 387.946 kb on - strand, within BACOVA_02067at 387.983 kb on - strand, within BACOVA_02067at 388.034 kb on + strand, within BACOVA_02067at 388.034 kb on + strand, within BACOVA_02067at 388.035 kb on - strand, within BACOVA_02067at 388.079 kb on + strand, within BACOVA_02067at 388.080 kb on - strand, within BACOVA_02067at 388.080 kb on - strand, within BACOVA_02067at 388.095 kb on - strand, within BACOVA_02067at 388.107 kb on + strand, within BACOVA_02067at 388.135 kb on + strand, within BACOVA_02067at 388.179 kb on - strand, within BACOVA_02067at 388.196 kb on - strand, within BACOVA_02067at 388.385 kb on + strand, within BACOVA_02067at 388.386 kb on - strand, within BACOVA_02067at 388.386 kb on - strand, within BACOVA_02067at 388.386 kb on - strand, within BACOVA_02067at 388.390 kb on + strand, within BACOVA_02067at 388.429 kb on + strandat 388.448 kb on + strandat 388.500 kb on - strandat 388.505 kb on + strandat 388.505 kb on + strandat 388.506 kb on - strandat 388.506 kb on - strandat 388.506 kb on - strandat 388.506 kb on - strandat 388.506 kb on - strandat 388.508 kb on - strandat 388.550 kb on + strandat 388.551 kb on - strandat 388.551 kb on - strandat 388.551 kb on - strandat 388.574 kb on + strandat 388.579 kb on + strandat 388.601 kb on + strandat 388.652 kb on + strandat 388.663 kb on - strandat 388.672 kb on + strandat 388.677 kb on - strandat 388.702 kb on + strandat 388.808 kb on - strand, within BACOVA_02068at 388.813 kb on + strand, within BACOVA_02068at 388.814 kb on - strand, within BACOVA_02068at 388.814 kb on - strand, within BACOVA_02068at 388.864 kb on + strand, within BACOVA_02068at 388.864 kb on + strand, within BACOVA_02068at 388.896 kb on + strand, within BACOVA_02068at 388.896 kb on + strand, within BACOVA_02068at 388.897 kb on - strand, within BACOVA_02068at 388.897 kb on - strand, within BACOVA_02068at 388.897 kb on - strand, within BACOVA_02068at 388.899 kb on - strand, within BACOVA_02068at 388.899 kb on - strand, within BACOVA_02068at 388.899 kb on - strand, within BACOVA_02068at 389.031 kb on - strand, within BACOVA_02068at 389.090 kb on + strand, within BACOVA_02068at 389.091 kb on - strand, within BACOVA_02068at 389.091 kb on - strand, within BACOVA_02068at 389.099 kb on - strand, within BACOVA_02068at 389.118 kb on - strand, within BACOVA_02068at 389.231 kb on - strandat 389.237 kb on + strandat 389.255 kb on + strandat 389.270 kb on - strandat 389.271 kb on + strandat 389.272 kb on - strandat 389.315 kb on + strandat 389.387 kb on - strandat 389.397 kb on + strandat 389.398 kb on - strandat 389.399 kb on + strandat 389.413 kb on + strandat 389.437 kb on + strandat 389.437 kb on + strandat 389.438 kb on - strandat 389.469 kb on + strand, within BACOVA_02069at 389.470 kb on - strand, within BACOVA_02069at 389.506 kb on + strand, within BACOVA_02069at 389.521 kb on + strand, within BACOVA_02069at 389.552 kb on + strand, within BACOVA_02069at 389.578 kb on - strand, within BACOVA_02069at 389.713 kb on - strand, within BACOVA_02069at 389.750 kb on + strand, within BACOVA_02069at 389.751 kb on - strand, within BACOVA_02069at 389.771 kb on - strand, within BACOVA_02069at 389.775 kb on - strand, within BACOVA_02069at 389.780 kb on + strand, within BACOVA_02069at 389.780 kb on + strand, within BACOVA_02069at 389.797 kb on - strand, within BACOVA_02069at 389.800 kb on + strand, within BACOVA_02069at 389.800 kb on + strand, within BACOVA_02069at 389.866 kb on - strand, within BACOVA_02069at 389.883 kb on + strand, within BACOVA_02069at 389.883 kb on + strand, within BACOVA_02069at 389.941 kb on + strandat 389.971 kb on + strandat 389.971 kb on + strandat 389.971 kb on + strandat 389.971 kb on + strandat 390.000 kb on - strandat 390.008 kb on + strandat 390.010 kb on + strandat 390.011 kb on - strandat 390.027 kb on + strandat 390.033 kb on - strandat 390.033 kb on - strandat 390.085 kb on - strandat 390.085 kb on - strandat 390.117 kb on + strandat 390.118 kb on - strandat 390.127 kb on + strandat 390.127 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C)
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387,674 - BACOVA_02067 0.42 -1.0
387,674 - BACOVA_02067 0.42 -0.8
387,714 - BACOVA_02067 0.44 -3.3
387,718 + BACOVA_02067 0.44 -1.5
387,719 - BACOVA_02067 0.44 +0.1
387,870 - BACOVA_02067 0.54 +0.4
387,870 - BACOVA_02067 0.54 -1.2
387,884 - BACOVA_02067 0.55 +2.2
387,894 + BACOVA_02067 0.56 +0.6
387,894 + BACOVA_02067 0.56 +0.2
387,895 - BACOVA_02067 0.56 -0.0
387,899 - BACOVA_02067 0.56 +1.6
387,946 - BACOVA_02067 0.59 +0.4
387,983 - BACOVA_02067 0.62 +1.4
388,034 + BACOVA_02067 0.65 +0.2
388,034 + BACOVA_02067 0.65 -1.9
388,035 - BACOVA_02067 0.65 -0.5
388,079 + BACOVA_02067 0.68 +1.7
388,080 - BACOVA_02067 0.68 -1.1
388,080 - BACOVA_02067 0.68 +0.3
388,095 - BACOVA_02067 0.69 -0.5
388,107 + BACOVA_02067 0.70 -0.6
388,135 + BACOVA_02067 0.71 +0.8
388,179 - BACOVA_02067 0.74 +0.6
388,196 - BACOVA_02067 0.75 -1.1
388,385 + BACOVA_02067 0.87 -1.4
388,386 - BACOVA_02067 0.87 -0.7
388,386 - BACOVA_02067 0.87 -1.7
388,386 - BACOVA_02067 0.87 -0.6
388,390 + BACOVA_02067 0.88 -1.2
388,429 + -0.5
388,448 + +0.8
388,500 - +1.8
388,505 + +2.4
388,505 + -0.3
388,506 - +1.5
388,506 - -0.5
388,506 - -0.4
388,506 - -1.4
388,506 - +0.6
388,508 - +1.7
388,550 + +0.0
388,551 - +0.5
388,551 - -0.8
388,551 - -3.8
388,574 + -1.4
388,579 + +0.6
388,601 + +3.2
388,652 + +0.2
388,663 - -1.1
388,672 + +1.3
388,677 - +1.2
388,702 + -1.3
388,808 - BACOVA_02068 0.25 -2.3
388,813 + BACOVA_02068 0.26 +0.3
388,814 - BACOVA_02068 0.26 +1.0
388,814 - BACOVA_02068 0.26 -0.1
388,864 + BACOVA_02068 0.35 +0.4
388,864 + BACOVA_02068 0.35 -0.2
388,896 + BACOVA_02068 0.41 +1.1
388,896 + BACOVA_02068 0.41 +1.0
388,897 - BACOVA_02068 0.41 -0.3
388,897 - BACOVA_02068 0.41 -1.2
388,897 - BACOVA_02068 0.41 +2.5
388,899 - BACOVA_02068 0.41 +1.0
388,899 - BACOVA_02068 0.41 -0.8
388,899 - BACOVA_02068 0.41 +0.6
389,031 - BACOVA_02068 0.65 -2.8
389,090 + BACOVA_02068 0.75 -1.2
389,091 - BACOVA_02068 0.75 -0.2
389,091 - BACOVA_02068 0.75 -1.6
389,099 - BACOVA_02068 0.77 -1.7
389,118 - BACOVA_02068 0.80 -1.2
389,231 - -0.6
389,237 + +0.1
389,255 + -2.6
389,270 - +0.2
389,271 + +0.6
389,272 - -0.6
389,315 + +1.6
389,387 - -0.7
389,397 + -1.6
389,398 - -2.2
389,399 + +0.2
389,413 + -0.2
389,437 + -0.3
389,437 + +0.2
389,438 - -2.6
389,469 + BACOVA_02069 0.11 +0.6
389,470 - BACOVA_02069 0.11 +2.0
389,506 + BACOVA_02069 0.17 -1.1
389,521 + BACOVA_02069 0.20 +0.7
389,552 + BACOVA_02069 0.26 +0.6
389,578 - BACOVA_02069 0.30 +1.0
389,713 - BACOVA_02069 0.54 +0.1
389,750 + BACOVA_02069 0.61 +2.9
389,751 - BACOVA_02069 0.61 +0.4
389,771 - BACOVA_02069 0.65 +4.2
389,775 - BACOVA_02069 0.65 -0.2
389,780 + BACOVA_02069 0.66 -0.6
389,780 + BACOVA_02069 0.66 -1.1
389,797 - BACOVA_02069 0.69 -0.9
389,800 + BACOVA_02069 0.70 +2.2
389,800 + BACOVA_02069 0.70 -2.2
389,866 - BACOVA_02069 0.82 +0.5
389,883 + BACOVA_02069 0.85 -0.2
389,883 + BACOVA_02069 0.85 +2.6
389,941 + +2.4
389,971 + -0.5
389,971 + +1.3
389,971 + +0.9
389,971 + -0.7
390,000 - +0.4
390,008 + +1.8
390,010 + -1.2
390,011 - +0.6
390,027 + -1.9
390,033 - +3.0
390,033 - -0.2
390,085 - -3.1
390,085 - -1.2
390,117 + -1.8
390,118 - -0.2
390,127 + +0.0
390,127 + -1.6

Or see this region's nucleotide sequence