Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01762

Experiment: amylopectin from maize 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01759 and BACOVA_01760 are separated by 3 nucleotidesBACOVA_01760 and BACOVA_01761 are separated by 32 nucleotidesBACOVA_01761 and BACOVA_01762 are separated by 200 nucleotidesBACOVA_01762 and BACOVA_01763 are separated by 28 nucleotidesBACOVA_01763 and BACOVA_01764 overlap by 29 nucleotidesBACOVA_01764 and BACOVA_01765 are separated by 163 nucleotides BACOVA_01759: BACOVA_01759 - hypothetical protein, at 183,029 to 183,286 _01759 BACOVA_01760: BACOVA_01760 - hypothetical protein, at 183,290 to 183,652 _01760 BACOVA_01761: BACOVA_01761 - hypothetical protein, at 183,685 to 183,894 _01761 BACOVA_01762: BACOVA_01762 - hypothetical protein, at 184,095 to 184,865 _01762 BACOVA_01763: BACOVA_01763 - hypothetical protein, at 184,894 to 185,475 _01763 BACOVA_01764: BACOVA_01764 - hypothetical protein, at 185,447 to 185,563 _01764 BACOVA_01765: BACOVA_01765 - hypothetical protein, at 185,727 to 186,551 _01765 Position (kb) 184 185Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 183.099 kb on - strand, within BACOVA_01759at 183.185 kb on - strand, within BACOVA_01759at 183.185 kb on - strand, within BACOVA_01759at 183.221 kb on + strand, within BACOVA_01759at 183.222 kb on - strand, within BACOVA_01759at 183.255 kb on - strand, within BACOVA_01759at 183.255 kb on - strand, within BACOVA_01759at 183.404 kb on + strand, within BACOVA_01760at 183.404 kb on + strand, within BACOVA_01760at 183.404 kb on + strand, within BACOVA_01760at 183.449 kb on + strand, within BACOVA_01760at 183.450 kb on - strand, within BACOVA_01760at 183.450 kb on - strand, within BACOVA_01760at 183.454 kb on - strand, within BACOVA_01760at 183.454 kb on - strand, within BACOVA_01760at 183.474 kb on + strand, within BACOVA_01760at 183.502 kb on + strand, within BACOVA_01760at 183.506 kb on + strand, within BACOVA_01760at 183.509 kb on + strand, within BACOVA_01760at 183.509 kb on + strand, within BACOVA_01760at 183.509 kb on + strand, within BACOVA_01760at 183.509 kb on + strand, within BACOVA_01760at 183.510 kb on - strand, within BACOVA_01760at 183.518 kb on - strand, within BACOVA_01760at 183.521 kb on + strand, within BACOVA_01760at 183.542 kb on + strand, within BACOVA_01760at 183.543 kb on - strand, within BACOVA_01760at 183.569 kb on - strand, within BACOVA_01760at 183.592 kb on - strand, within BACOVA_01760at 183.631 kb on + strandat 183.632 kb on - strandat 183.687 kb on - strandat 183.827 kb on - strand, within BACOVA_01761at 183.831 kb on + strand, within BACOVA_01761at 183.832 kb on - strand, within BACOVA_01761at 183.875 kb on - strandat 183.894 kb on + strandat 183.899 kb on + strandat 183.900 kb on - strandat 183.900 kb on - strandat 183.922 kb on + strandat 183.922 kb on + strandat 183.932 kb on - strandat 183.987 kb on - strandat 184.012 kb on + strandat 184.013 kb on - strandat 184.023 kb on - strandat 184.060 kb on + strandat 184.060 kb on + strandat 184.061 kb on - strandat 184.093 kb on + strandat 184.115 kb on + strandat 184.116 kb on - strandat 184.260 kb on + strand, within BACOVA_01762at 184.262 kb on + strand, within BACOVA_01762at 184.262 kb on + strand, within BACOVA_01762at 184.263 kb on - strand, within BACOVA_01762at 184.398 kb on - strand, within BACOVA_01762at 184.500 kb on - strand, within BACOVA_01762at 184.502 kb on + strand, within BACOVA_01762at 184.502 kb on + strand, within BACOVA_01762at 184.502 kb on + strand, within BACOVA_01762at 184.502 kb on + strand, within BACOVA_01762at 184.505 kb on + strand, within BACOVA_01762at 184.505 kb on + strand, within BACOVA_01762at 184.506 kb on - strand, within BACOVA_01762at 184.510 kb on + strand, within BACOVA_01762at 184.554 kb on + strand, within BACOVA_01762at 184.555 kb on - strand, within BACOVA_01762at 184.555 kb on - strand, within BACOVA_01762at 184.637 kb on + strand, within BACOVA_01762at 184.638 kb on - strand, within BACOVA_01762at 184.692 kb on - strand, within BACOVA_01762at 184.818 kb on - strandat 184.822 kb on - strandat 184.822 kb on - strandat 184.839 kb on - strandat 184.846 kb on - strandat 184.911 kb on - strandat 184.935 kb on - strandat 184.938 kb on - strandat 184.975 kb on - strand, within BACOVA_01763at 184.980 kb on + strand, within BACOVA_01763at 184.997 kb on + strand, within BACOVA_01763at 185.012 kb on + strand, within BACOVA_01763at 185.025 kb on - strand, within BACOVA_01763at 185.041 kb on - strand, within BACOVA_01763at 185.041 kb on - strand, within BACOVA_01763at 185.061 kb on + strand, within BACOVA_01763at 185.129 kb on + strand, within BACOVA_01763at 185.129 kb on + strand, within BACOVA_01763at 185.160 kb on + strand, within BACOVA_01763at 185.160 kb on + strand, within BACOVA_01763at 185.161 kb on - strand, within BACOVA_01763at 185.161 kb on - strand, within BACOVA_01763at 185.163 kb on + strand, within BACOVA_01763at 185.163 kb on + strand, within BACOVA_01763at 185.236 kb on + strand, within BACOVA_01763at 185.239 kb on - strand, within BACOVA_01763at 185.247 kb on - strand, within BACOVA_01763at 185.319 kb on + strand, within BACOVA_01763at 185.319 kb on + strand, within BACOVA_01763at 185.323 kb on - strand, within BACOVA_01763at 185.323 kb on - strand, within BACOVA_01763at 185.331 kb on + strand, within BACOVA_01763at 185.331 kb on + strand, within BACOVA_01763at 185.350 kb on + strand, within BACOVA_01763at 185.468 kb on + strandat 185.469 kb on - strandat 185.469 kb on - strandat 185.470 kb on + strandat 185.487 kb on + strand, within BACOVA_01764at 185.490 kb on + strand, within BACOVA_01764at 185.491 kb on - strand, within BACOVA_01764at 185.492 kb on + strand, within BACOVA_01764at 185.493 kb on - strand, within BACOVA_01764at 185.494 kb on + strand, within BACOVA_01764at 185.525 kb on - strand, within BACOVA_01764at 185.618 kb on - strandat 185.657 kb on + strandat 185.695 kb on + strandat 185.704 kb on + strandat 185.712 kb on + strandat 185.712 kb on + strandat 185.712 kb on + strandat 185.712 kb on + strandat 185.740 kb on - strandat 185.740 kb on - strandat 185.743 kb on + strandat 185.744 kb on - strandat 185.744 kb on - strandat 185.744 kb on - strandat 185.824 kb on + strand, within BACOVA_01765at 185.856 kb on - strand, within BACOVA_01765at 185.858 kb on - strand, within BACOVA_01765

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C)
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183,099 - BACOVA_01759 0.27 -1.5
183,185 - BACOVA_01759 0.60 -0.1
183,185 - BACOVA_01759 0.60 +0.3
183,221 + BACOVA_01759 0.74 -1.3
183,222 - BACOVA_01759 0.75 -1.9
183,255 - BACOVA_01759 0.88 -0.4
183,255 - BACOVA_01759 0.88 +1.8
183,404 + BACOVA_01760 0.31 +3.0
183,404 + BACOVA_01760 0.31 -0.0
183,404 + BACOVA_01760 0.31 -0.5
183,449 + BACOVA_01760 0.44 +0.7
183,450 - BACOVA_01760 0.44 +1.1
183,450 - BACOVA_01760 0.44 +0.0
183,454 - BACOVA_01760 0.45 -1.1
183,454 - BACOVA_01760 0.45 -0.5
183,474 + BACOVA_01760 0.51 -1.0
183,502 + BACOVA_01760 0.58 -1.9
183,506 + BACOVA_01760 0.60 +2.4
183,509 + BACOVA_01760 0.60 -0.9
183,509 + BACOVA_01760 0.60 -0.6
183,509 + BACOVA_01760 0.60 -1.7
183,509 + BACOVA_01760 0.60 -1.1
183,510 - BACOVA_01760 0.61 -0.8
183,518 - BACOVA_01760 0.63 -1.1
183,521 + BACOVA_01760 0.64 -1.4
183,542 + BACOVA_01760 0.69 +1.3
183,543 - BACOVA_01760 0.70 +0.5
183,569 - BACOVA_01760 0.77 +2.1
183,592 - BACOVA_01760 0.83 +0.9
183,631 + -1.7
183,632 - +0.2
183,687 - -0.5
183,827 - BACOVA_01761 0.68 +1.2
183,831 + BACOVA_01761 0.70 -0.7
183,832 - BACOVA_01761 0.70 +1.3
183,875 - -0.7
183,894 + +0.6
183,899 + +0.1
183,900 - +1.2
183,900 - +1.2
183,922 + -0.0
183,922 + -0.6
183,932 - +1.2
183,987 - -0.9
184,012 + +2.4
184,013 - -0.3
184,023 - +0.2
184,060 + -1.2
184,060 + +0.3
184,061 - -0.5
184,093 + +1.5
184,115 + +1.3
184,116 - -0.1
184,260 + BACOVA_01762 0.21 -1.6
184,262 + BACOVA_01762 0.22 +0.1
184,262 + BACOVA_01762 0.22 +0.3
184,263 - BACOVA_01762 0.22 +2.4
184,398 - BACOVA_01762 0.39 +0.9
184,500 - BACOVA_01762 0.53 +3.1
184,502 + BACOVA_01762 0.53 -1.4
184,502 + BACOVA_01762 0.53 -0.9
184,502 + BACOVA_01762 0.53 -1.2
184,502 + BACOVA_01762 0.53 -0.1
184,505 + BACOVA_01762 0.53 -2.1
184,505 + BACOVA_01762 0.53 +1.7
184,506 - BACOVA_01762 0.53 -0.8
184,510 + BACOVA_01762 0.54 -1.6
184,554 + BACOVA_01762 0.60 +0.4
184,555 - BACOVA_01762 0.60 -1.7
184,555 - BACOVA_01762 0.60 -3.5
184,637 + BACOVA_01762 0.70 -0.3
184,638 - BACOVA_01762 0.70 +1.5
184,692 - BACOVA_01762 0.77 -0.7
184,818 - -3.4
184,822 - -0.5
184,822 - -0.4
184,839 - +0.9
184,846 - -0.7
184,911 - -1.6
184,935 - -0.5
184,938 - -0.1
184,975 - BACOVA_01763 0.14 +0.6
184,980 + BACOVA_01763 0.15 -1.6
184,997 + BACOVA_01763 0.18 -1.2
185,012 + BACOVA_01763 0.20 -1.1
185,025 - BACOVA_01763 0.23 -2.6
185,041 - BACOVA_01763 0.25 -0.7
185,041 - BACOVA_01763 0.25 -2.3
185,061 + BACOVA_01763 0.29 -2.4
185,129 + BACOVA_01763 0.40 +0.2
185,129 + BACOVA_01763 0.40 +0.2
185,160 + BACOVA_01763 0.46 -0.5
185,160 + BACOVA_01763 0.46 -2.5
185,161 - BACOVA_01763 0.46 -1.5
185,161 - BACOVA_01763 0.46 -1.3
185,163 + BACOVA_01763 0.46 -2.3
185,163 + BACOVA_01763 0.46 +0.1
185,236 + BACOVA_01763 0.59 +0.2
185,239 - BACOVA_01763 0.59 -1.6
185,247 - BACOVA_01763 0.61 +0.4
185,319 + BACOVA_01763 0.73 -2.0
185,319 + BACOVA_01763 0.73 -0.5
185,323 - BACOVA_01763 0.74 -0.3
185,323 - BACOVA_01763 0.74 -0.7
185,331 + BACOVA_01763 0.75 -3.6
185,331 + BACOVA_01763 0.75 -2.2
185,350 + BACOVA_01763 0.78 -1.2
185,468 + +0.4
185,469 - +1.1
185,469 - +0.1
185,470 + +0.5
185,487 + BACOVA_01764 0.34 -2.4
185,490 + BACOVA_01764 0.37 -0.1
185,491 - BACOVA_01764 0.38 -0.7
185,492 + BACOVA_01764 0.38 +0.5
185,493 - BACOVA_01764 0.39 -0.9
185,494 + BACOVA_01764 0.40 +0.5
185,525 - BACOVA_01764 0.67 -0.7
185,618 - -0.1
185,657 + +1.6
185,695 + -1.2
185,704 + -1.1
185,712 + +0.5
185,712 + +0.9
185,712 + +0.4
185,712 + -0.5
185,740 - +3.3
185,740 - -1.5
185,743 + +0.9
185,744 - +2.0
185,744 - +0.1
185,744 - +0.3
185,824 + BACOVA_01765 0.12 +0.1
185,856 - BACOVA_01765 0.16 +2.8
185,858 - BACOVA_01765 0.16 -0.7

Or see this region's nucleotide sequence